Analytical Tools for Dynamic Combinatorial Libraries of Cyclic Peptides.

Target-directed dynamic combinatorial chemistry is a very attractive strategy for the discovery of bioactive peptides. However, its application has not yet been demonstrated, presumably due to analytical challenges that arise from the diversity of a peptide library with combinatorial side-chains. We previously reported an efficient method to generate, under biocompatible conditions, large dynamic libraries of cyclic peptides grafted with amino acid's side-chains, by thiol-to-thioester exchanges. In this work, we present analytical tools to easily characterize such libraries by HPLC and mass spectrometry, and in particular to simplify the isomers' distinction requiring sequencing by MS/MS fragmentations. After structural optimization, the cyclic scaffold exhibits a UV-tag, absorbing at 415 nm, and an ornithine residue which favors the regioselective ring-opening and simultaneous MS/MS fragmentation, in the gas-phase.

Light-Promoted Basic Nitrogen Unmasking in Arene Ruthenium Complexes Derived from Z-Configured 2,2'-Azobispyridine.

Two novel 2,2'-azobispyridine derivatives bearing N-dialkylamino substituents at position 4,4' were synthesized and their E-Z photoswitching behavior was characterized by combination of 1 H- and 13 C NMR spectroscopy, UV-Vis absorption and DFT calculations. Both isomers act as ligands towards arene-RuII centers, leading either to E-configured 5-membered chelates (involving coordination of nitrogen atoms from N=N bond and pyridine) or to the uncommon Z-configured 7-membered chelates (involving coordination of nitrogen atoms from both pyridines). The latter show good stability in the dark, allowing single crystal X-ray diffraction study to be reported here for the first time. All synthesized Z-configured arene-RuII complexes undergo irreversible photo-isomerization to their corresponding E isomers with rearrangement of their coordination pattern. This property was advantageously exploited for the light-promoted unmasking of a basic nitrogen atom of the ligand.

Visible-Light-Initiated Palladium-Catalyzed Cross-coupling by PPh3 Uncaging from an Azobenzene Ruthenium-Arene Complex.

Photo-release of triphenylphosphine from a sulfonamide azobenzene ruthenium-arene complex was exploited to activate PdII Cl2 into Pd0 catalyst, for the photo-initiation of Sonogashira cross-coupling. The transformation was initiated on demand - by using simple white LED strip lights - with a high temporal response and the ability to control reaction rate by changing the irradiation time. Various substrates were successfully applied to this photo-initiated cross-coupling, thus illustrating the wide functional-group tolerance of our photo-caged catalyst activator, without any need for sophisticated photochemistry apparatus.

An investigation of palladium-catalyzed Stille-type cross-coupling of nitroarenes in perylenediimide series.

We report herein an unprecedented palladium-catalyzed cross-coupling reaction between mononitro-perylenediimide (PDI) and various arylstannanes. Optimized conditions developed with this Stille-type reaction allow the grafting of (hetero)aryls of various electronic nature in the bay region of PDIs. Moreover, we capitalized on the high selectivity of this cross-coupling through the desymmetrization of the dinitro-PDI substrate.

Synthetic strategies tailoring colours in multichromophoric organic nanostructures.

There has never been a time when colour did not fascinate humanity, inspiring an unceasing manufacturing of a kaleidoscopic variety of dyes and pigments that brought about great revolutions in art, cosmetics, fashion, and our lifestyle as a whole. Over the centuries these tints evolved from raw earths to molecular masterpieces devised by expert chemists whose properties are now being exploited far beyond traditional applications. Mimicking Nature, a timely challenge, regards the preparation of innovative and highly efficient multi-coloured architectures structured at the molecular and nanoscopic scale with specific light-absorbing and light-emitting properties. This tutorial review provides an overview on the chemical strategies developed to engineer and customise these ingenious coloured nanostructures tackling the current performance of organic matter in cutting edge technological sectors, such as solar energy conversion.

Visible-Light-Mediated Synthesis of AzaBenzannulated Perylenediimide-Based Light-Harvesting Dyads.

Intramolecular imine photocyclization has been explored for grafting on the bay region of perylenediimide (PDI) different electro- and photoactive chromophores to achieve new AzaBenzannulated-PDI (AzaBPDI) dyads. Triphenylamine (TPA), fluorene (Fl), perylenemonoimide (PMI), and perylenediimide (PDI) units have been successfully assembled to AzaBPDI using this straightforward one-pot synthesis starting from the easily accessible 1-aminoPDI. This original procedure was compared to the well-known Pictet-Spengler reaction and appears to be an attractive alternative in terms of versatility and efficiency with higher yields obtained. The optical and electrochemical properties of these molecular systems demonstrated large absorption capabilities in the visible range, good accepting abilities with low LUMO levels, and efficient electronic interactions between chromophoric units such as energy or electron transfers. In addition, with their large dihedral angle estimated by theoretical calculations, those dyads should present interesting applications in various organic optoelectronic devices. In particular, the PMI-AzaBPDI and PDI-AzaBPDI dyads presenting low LUMO levels, a broad absorption in the visible range, and a twisted conformation make them good candidates as non-fullerene acceptors in organic solar cells.

Desymmetrization of Perylenediimide Bay Regions Using Selective Suzuki-Miyaura Reactions from Dinitro Substituted Derivatives.

Bay decoration of perylenediimide (PDI) is an attractive approach for tuning the optoelectronic properties of the dye as well as breaking backbone planarity, which provides the possibility of preventing the undesired formation of aggregates. This is usually performed through successive bis-bromination of PDI and pallado-catalyzed cross-coupling, which leads to symmetric triads. We now describe an efficient synthetic strategy for desymmetrization of the accepting PDI core by starting from its bis-nitration. To this end, Suzuki-Miyaura Couplings (SMC) were carried out on a mixture of 1,6- and 1,7-dinitroPDI regioisomers to add triphenylamine donating moieties and obtain donor-acceptor-donor triads. Investigation of the reactivity of dinitro PDI derivatives toward SMC has allowed us to access unprecedented asymmetric π-conjugated PDI-centered triads. These 1,6- and 1,7-PDI based triads, prepared as regioisomeric mixtures, were successfully separated and their spectroscopic, crystallographic and optoelectronic differences are reported.

An Imine Photocyclization as an Alternative to the Pictet-Spengler Reaction for the Synthesis of AzaBenzannulated Perylenediimide Dyes.

AzaBenzannulated perylenediimide (AzaBPDI) dyes were synthesized in high yields via a new reaction sequence involving an imine condensation followed by visible light-induced photocyclization. The large scope and efficiency of this alternative to the Pictet-Spengler reaction are demonstrated, allowing easy preparation of dimeric AzaBPDI as potential non-fullerene acceptors for organic solar cells.

Nitro-Perylenediimide: An Emerging Building Block for the Synthesis of Functional Organic Materials.

Perylenediimide (PDI) is one of the most important classes of dyes and is intensively explored in the field of functional organic materials. The functionalization of this electron-deficient aromatic core is well-known to tune the outstanding optoelectronic properties of PDI derivatives. In this respect, the functionalization has been mostly addressed in bay-positions to halogenated derivatives through nucleophilic substitutions or metal-catalyzed coupling reactions. Being aware of the synthetic difficulties of obtaining the key intermediate 1-bromoPDI, we will present as an alternative in this review the potential of 1-nitroPDI: a powerful building block to access a large variety of PDI-based materials.

Templated Chromophore Assembly on Peptide Scaffolds: A Structural Evolution.

The use of a template that bears pre-programmed receptor sites for selectively accommodating chromophores at given positions is an attractive approach for engineering artificial-light-harvesting systems. Indulging this line of thought, this work tackles the creation of tailored antenna architectures with yellow, red and blue chromophores, exploiting three dynamic covalent reactions simultaneously, namely disulfide exchange, acyl hydrazone, and boronic ester formations. The effect of various structural modifications, such as the chromophores as well as their spatial organization (distance, orientation, order) on the energy transfer within the antennas was studied by means of steady-state UV/Vis absorption and fluorescence spectroscopies. This systematic study allowed for a significant improvement of the energy-transfer efficiencies to a noticeable 22 and 15 % for the yellow and red donors, respectively, across the chromophores to the blue acceptor. Metadynamics simulations suggested that the conformational properties of the antennas are driven by intramolecular chromophoric stacking interactions that, upon forcing the α-helix to fold on itself, annul any effects deriving from the programming of the spatial arrangement of the receptor sides in the peptide backbone.

Templated Chromophore Assembly by Dynamic Covalent Bonds.

Through the simultaneous use of three orthogonal dynamic covalent reactions, namely disulfide, boronate, and acyl hydrazone formation, we conceived a facile and versatile protocol to spatially organize tailored chromophores, which absorb in the blue, red, and yellow regions, on a preprogrammed α-helix peptide. This approach allowed the assembly of the dyes in the desired ratio and spacing, as dictated by both the relative positioning and distribution of the recognition units on the peptide scaffold. Steady-state UV/Vis absorption and emission studies suggest an energy transfer from the yellow and red donors to the blue acceptor. A molecular dynamics simulation supports the experimental findings that the helical structure is maintained after the assembly and the three dyes are confined in defined conformational spaces.