Molecular identification and biocontrol of ochratoxigenic fungi and ochratoxin A in animal feed marketed in the state of Qatar.

Ochratoxin A (OTA) is a toxic fungal metabolite produced by some Aspergillus and Penicillium species. This work was designed to explore the presence of OTA and ochratoxigenic fungi in feed grains marketed in Qatar and their biological control by a bacterium (Burkholderia cepacia). Significantly higher levels of OTA were detected in mixed grains samples (144.59 ± 6.63 µg/kg), compared to the maize (25.27 ± 1.89 µg/kg) and wheat (3.37 ± 0.11 µg/kg). OTA-producing fungi (A. niger, A. ochraceus, A. westerdijkiae, A. carbonarius and P. verrucosum) were identified on the basis of their morphological features as well as through polymerase chain reaction (PCR). Putative ochratoxigenic polyketide genes in these isolates were evidenced by using primers AoOTA-L/AoOTA-R (in A. ochraceus and A. westerdijkiae), AoPks1/AoPks2 (in A. niger and A. ochraceus) and PenPks1/Penpks2 (in P. verrucosum). On synthetic media, A. westerdijkiae showed the highest OTA synthesis (5913 ± 576 µg/kg) than the closely related A. ochraceus (3520 ± 303 µg/kg), A. carbonarius (3064 ± 289 µg/kg) and P. verrucosum (3030 ± 710 µg/kg). Burkholderia cepacia cells and culture extract showed promising biological control potentials against OTA producing fungi. On the basis of these findings, it can be concluded that animal feed samples are generally contaminated with OTA-producing fungi as well as OTA, and Burkholderia cepacia CS5 exhibits promising antifungal activities.

Endophytes and Halophytes to Remediate Industrial Wastewater and Saline Soils: Perspectives from Qatar.

Many halophytes are considered to be salt hyperaccumulators, adopting ion extrusion and inclusion mechanisms. Such plants, with high aboveground biomass, may play crucial roles in saline habitats, including soil desalination and phytoremediation of polluted soils and waters. These plants cause significant changes in some of the soil's physical and chemical properties; and have proven efficient in removing heavy metals and metabolizing organic compounds from oil and gas activities. Halophytes in Qatar, such as Halopeplis perfoliata, Salicornia europaea, Salsola soda, and Tetraena qatarensis, are shown here to play significant roles in the phytoremediation of polluted soils and waters. Microorganisms associated with these halophytes (such as endophytic bacteria) might boost these plants to remediate saline and polluted soils. A significant number of these bacteria, such as Bacillus spp. and Pseudomonas spp., are reported here to play important roles in many sectors of life. We explore the mechanisms adopted by the endophytic bacteria to promote and support these halophytes in the desalination of saline soils and phytoremediation of polluted soils. The possible roles played by endophytes in different parts of native plants are given to elucidate the mechanisms of cooperation between these native plants and the associated microorganisms.

Diversity, Concentration and Dynamics of Culturable Fungal Bioaerosols at Doha, Qatar.

This research was conducted to investigate the dynamics of airborne fungi using viable culture collection and in respect to different abiotic variables, including seasonal and intra-diurnal variations. A gravimetric method was used to sample airborne fungal deposition on potato dextrose agar plates on alternate days, for a year between April 2015 to March 2016. From 176 settle plate exposures, a total of 1197 mould and 283 yeast colony-forming units (CFU), 21 genera and 62 species were retrieved. The highest fungal spore count was recorded in February 2016, whereas the lowest count occurred in August 2015. The main constituents of the fungal airspora were attributed to Cladosporium (60.2%), Aspergillus (10.4%), Fusarium (9.4%), Alternaria (8.5%), and Ganoderma spp. (2.3%). Temperature was negatively correlated with total colony count (r = -0.231, p ≤ 0.05) or species richness (r = -0.267, p ≤ 0.001), while wind speed was positively correlated with total colony count (r = 0.484, p ≤ 0.001) or species richness (r = 0.257, p ≤ -0.001). The highest dispersal of fungal spores was obtained at 18:00, whereas the lowest fungal spores release was recorded at 00:00 (midnight). There were no significant differences in species composition and richness of the airborne fungal population between two study sites, the Industrial area and Qatar University Campus. The count of Alternaria spp. and Fusarium spp. were significantly higher at the Industrial area site, which corresponds to a higher CO2 level than the Qatar University site. This study lays the foundation for future work to assess the implications of such aeromycological data on public health.

Evidence-Based Medicine and Clinical Practice: the first Italian attempt to define the appropriateness of rehabilitation admission criteria through the application of the Delphi method.

BACKGROUND: One of the consequences of today's global economic crisis is the need to control healthcare spending, in particular by improving the level of appropriateness. Thus, admission to rehabilitation has become an issue, especially as regards inappropriateness of resource allocation. The scientific literature suggests that more attention should be paid to the problem of clinical appropriateness in order to better identify the patients' actual needs. For the first time in Italy, this study aims at defining the appropriateness of intensive rehabilitation admission criteria through use of the Delphi method involving a panel of national experts. MATERIAL AND METHODS: A three-round Delphi survey was conducted according to international guidelines. Electronic questionnaires were individually sent via e-mail to ensure the participants' anonymity throughout the process. Questions were mostly based on rehabilitation literature. RESULTS: During the Delphi process, a total of 79 items were submitted to a heterogenous panel of rehabilitation experts who were asked to express their level of agreement to the item contents on a five-point Likert scale. At the end of the survey, a list of 19 appropriate criteria for admission to intensive rehabilitation facilities and 21 reasons for inappropriateness was drawn up. CONCLUSION: This study represents the first attempt in Italy to define shared and objective appropriateness criteria for admission to intensive rehabilitation. Out of the total number of experts invited to participate (31), only 16 completed the entire survey. This poor participation rate unfortunately demonstrates the lack of awareness among Italian rehabilitation professionals, which is a further sign of both the scarcity of scientific evidence in this area and the need to reach consensus on admission criteria.

Cross-cultural adaptation and preliminary test-retest reliability of the Italian version of the Complexity Rehabilitation Scale-Extended (13th version).

BACKGROUND: In Italy, the lack of appropriate use of intensive rehabilitative services is an acknowledged issue, as demonstrated by periodic epidemiological surveys. Rehabilitation activities are planned without considering the clinical complexity, known to be one of the most fundamental factors able to outline the real patients' needs on recently clinical practice rehabilitation guidelines. Alternative diagnostic systems become, therefore, necessary. For this reason, we would like to propose the Rehabilitation Complexity Scale - Extended version (RCS-E) within intensive rehabilitation units in Emilia Romagna. AIM: This study aims at submitting an Italian translation, cross-cultural adaptation and preliminary reliability evaluation of the Rehabilitation Complexity Scale Extended (13th Version) (RCS-E). DESIGN: Face validity and test-retest reliability. SETTING: The study was conducted in three different rehabilitation units of the Emilia Romagna region, Northern Italy. POPULATION: Ten expert physicians and 51 Intensive (code 56) rehabilitation in-patients were recruited. METHODS: A cross-cultural adaptation of the scale was built from English into Italian, closely complying with international guidelines. Face validity and test-retest reliability were carried out to evaluate the comprehensibility and goodness of fit of the new scale. RESULTS: An overall positive judgement was obtained with the face validity test. No significant differences were observed between the original and the adapted scale scoring. Internal consistency measured on 51 patients by Cronbach's alpha was 0.702 for the scale. The estimated SEM was 1.211. ICCconsistency was 0.702. Split-Half reliability and the Spearman-Brown prophecy were 0.633 and 0.775, respectively. Test-retest reliability of the RCS-E measured with ICCagreement was 0.903. CONCLUSION: The adapted RCS-E provides a sensitive and reliable tool that appears to be suitable for measuring clinical complexity in Italian code 56 rehabilitation units. It is the first Italian version of the scale to be devised. CLINICAL REHABILITATION IMPACT: Further statistical validation will assess the Italian RCS-E as a possible instrument for guiding the patients' assignment to the rehabilitation settings that best suit their specific needs. These preliminary data represent the first step through this purpose.

Isolation and characterization of extracellular bioflocculants produced by bacteria isolated from Qatari ecosystems.

Compared with conventional synthetic flocculants, bioflocculants has special advantages such as safety, strong effect, biodegradable and harmlessness to humans and the environment, so they may potentially be applied in drinking and wastewater treatment, downstream processing, and fermentation processes. To utilize bioflocculants widely in industrial fields, it is desirable to find various microorganisms with high bioflocculant-producing ability and improve the flocculating efficiency of the bioflocculant. In the present study, screening of new flocculant-producing microorganisms was carried out using samples collected from different Qatari ecosystems. The flocculating activity of the novel bioflocculants produced by isolated microorganisms was investigated. A total of 5 g/l Kaolin suspension was used to measure the flocculating activity. Isolated bioflocculant-producing bacteria were identified by 16S rDNA analysis, using PCR with universal primers. Comparative analysis of the 16S rDNA sequence (approximately 550 bp) in the GenBank database revealed that these bacteria are related to the genus Bacillus. FT-IR spectrometry analysis of the extracted bioflocculants indicated the presence of carboxyl, hydroxyl and amino groups preferred for the flocculation process. Influences of pH and bioflocculant dosage on the flocculation were also examined. The maximum flocculating rates were observed at pH 7, 7 and 3 of the bioflocculants derived from strains QUST2, QUST6 and QUST9, respectively. However, 20.0 mg/l was the dose that gave the highest flocculating rate with all examined bioflocculants. The elemental analysis of examined bioflocculants revealed the mass proportion of C, H, N and S. Carbon and nitrogen contents of examined bioflocculants were in the range of 42-48% and 11-12%, respectively.

The chemistry of precipitation, throughfall and stemflow in two holm oak (Quercus ilex L.) forests under a contrasted pollution environment in NE Spain.

Atmospheric deposition was studied through measurements of bulk deposition, throughfall and stemflow at two sites of contrasted exposure to pollution in the Montseny mountains (Northeastern Spain). To explore the contribution of local or distant sources at both sites, concentration data and precipitation amounts (log transformed) for both bulk deposition and net throughfall were fitted by linear regression. These models indicated the more important contribution of washout scavenging processes and dry deposition at the pollution exposed site. This is relevant in the context of Mediterranean holm oak forests: up to now, most of the studies have been conducted in protected remote sites and were little representative of the fluxes in forests close to industrial activity, traffic, agriculture and residential areas.

Nitrogen deposition in Mediterranean forests.

Atmospheric deposition of inorganic nitrogen was studied at two forested sites in the Montseny mountains (northeast Spain), peripheral to the Barcelona conurbation, and at a nearby lowland town, using bulk deposition, wet-only deposition, throughfall, and dry deposition inferred from branch-washes and surrogate surfaces (metacrylate plates). Bulk deposition inputs of ammonium and nitrate did not show significant temporal trends over a 16-year period. Bulk inputs of inorganic N were moderate, ranging from 6 to 10 kg N ha(-1) year(-1) depending on the time period considered and the degree of site exposure to polluted air masses from the Barcelona conurbation. Large dry-sedimented particles played a minor role, since wet-only inputs were virtually identical to bulk inputs. On the contrary, branch- and plate-washes indicated substantial dry inputs of N gases and small particles. Total atmospheric deposition was estimated at 15-22 kg N ha(-1) year(-1), most of it being retained within the studied broadleaved evergreen forests. Ecosystem N availability is thus likely to be increasing in these forests.