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1.
Biochim Biophys Acta Mol Basis Dis ; 1868(9): 166433, 2022 09 01.
Article in English | MEDLINE | ID: mdl-35569737

ABSTRACT

Methylmalonic aciduria cblB type (MMA cblB type, MMAB OMIM #251110), caused by a deficiency in the enzyme ATP:cob(I)alamin adenosyltransferase (ATR, E.C_2. 5.1.17), is a severe metabolic disorder with a poor prognosis despite treatment. We recently described the potential therapeutic use of pharmacological chaperones (PCs) after increasing the residual activity of ATR in patient-derived fibroblasts. The present work reports the successful generation of hepatocyte-like cells (HLCs) differentiated from two healthy and two MMAB induced pluripotent stem cell (iPSC) lines, and the use of this platform for testing the effects of PCs. The MMAB cells produced little ATR, showed reduced residual ATR activity, and had higher concentrations of methylmalonic acid compared to healthy HLCs. Differential proteome analysis revealed the two MMAB HCLs to show reproducible differentiation, but this was not so for the healthy HLCs. Interestingly, PC treatment in combination with vitamin B12 increased the amount of ATR available, and subsequently ATR activity, in both MMAB HLCs. More importantly, the treatment significantly reduced the methylmalonic acid content of both. In summary, the HLC model would appear to be an excellent candidate for the pharmacological testing of the described PCs, for analyzing the effects of new drugs, and investigating the repurposing of older drugs, before testing in animal models.


Subject(s)
Induced Pluripotent Stem Cells , Methylmalonic Acid , Adaptor Proteins, Signal Transducing , Amino Acid Metabolism, Inborn Errors , Animals , Hepatocytes , Humans , Mutation , Proto-Oncogene Proteins c-cbl
2.
Data Brief ; 7: 755-9, 2016 Jun.
Article in English | MEDLINE | ID: mdl-27054191

ABSTRACT

This data article contains complementary figures to the research article "Mitochondrial response to the BCKDK-deficiency: some clues to understand the positive dietary response in this form of autism" [1]. Herein we present data relative to the effect of knocking down BCKDK gene on the real time oxygen consumption rate of fibroblasts obtained from a Maple Syrup Urine Disease (MSUD) patient. Interference of BCKDK expression on such cells showing a reduced branched-chain α-ketoacid dehydrogenase (BCKDHc) activity; let us generate a scenario to study the direct effect of BCKDK absence in an environment of high branched-chain amino acids (BCAAs) concentrations. Data relative to the effectiveness of the knockdown together with the potentiality of the BCKDK-knockdown to increase the deficient branched-chain α-ketoacid dehydrogenase activity detected in MSUD patients are also shown.

3.
Clin Genet ; 90(3): 252-7, 2016 09.
Article in English | MEDLINE | ID: mdl-26830710

ABSTRACT

Specific mitochondrial enzymatic deficiencies in the catabolism of branched-chain amino acids cause methylmalonic aciduria (MMA), propionic acidemia (PA) and maple syrup urine disease (MSUD). Disease-causing mutations were identified in nine unrelated branched-chain organic acidurias (BCOA) patients. We detected eight previously described mutations: p.Asn219Tyr, p.Arg369His p.Val553Glyfs*17 in MUT, p.Thr198Serfs*6 in MMAA, p.Ile144_Leu181del in PCCB, p.Gly288Valfs*11, p.Tyr438Asn in BCKDHA and p.Ala137Val in BCKDHB gene. Interestingly, we identified seven novel genetic variants: p.Leu549Pro, p.Glu564*, p.Leu641Pro in MUT, p.Tyr206Cys in PCCB, p.His194Arg, p.Val298Met in BCKDHA and p.Glu286_Met290del in BCKDHB gene. In silico and/or eukaryotic expression studies confirmed pathogenic effect of all novel genetic variants. Aberrant enzymes p.Leu549Pro MUT, p.Leu641Pro MUT and p.Tyr206Cys PCCB did not show residual activity in activity assays. In addition, activity of MUT enzymes was not rescued in the presence of vitamin B12 precursor in vitro which was in accordance with non-responsiveness or partial responsiveness of patients to vitamin B12 therapy. Our study brings the first molecular genetic data and detailed phenotypic characteristics for MMA, PA and MSUD patients for Serbia and the whole South-Eastern European region. Therefore, our study contributes to the better understanding of molecular landscape of BCOA in Europe and to general knowledge on genotype-phenotype correlation for these rare diseases.


Subject(s)
3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide)/genetics , Amino Acid Metabolism, Inborn Errors/genetics , Maple Syrup Urine Disease/genetics , Methylmalonyl-CoA Decarboxylase/genetics , Mitochondrial Membrane Transport Proteins/genetics , Propionic Acidemia/genetics , 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide)/chemistry , Amino Acid Metabolism, Inborn Errors/physiopathology , Amino Acids, Branched-Chain/genetics , Female , Genotype , Humans , Infant , Infant, Newborn , Male , Maple Syrup Urine Disease/physiopathology , Methylmalonyl-CoA Decarboxylase/chemistry , Mitochondrial Membrane Transport Proteins/chemistry , Mutation , Phenotype , Propionic Acidemia/physiopathology , Protein Conformation
4.
Biochim Biophys Acta ; 1862(4): 592-600, 2016 04.
Article in English | MEDLINE | ID: mdl-26809120

ABSTRACT

Mutations on the mitochondrial-expressed Branched Chain α-Keto acid Dehydrogenase Kinase (BCKDK) gene have been recently associated with a novel dietary-treatable form of autism. But, being a mitochondrial metabolism disease, little is known about the impact on mitochondrial performance. Here, we analyze the mitochondrial response to the BCKDK-deficiency in patient's primary fibroblasts by measuring bioenergetics, ultra-structural and dynamic parameters. A two-fold increase in superoxide anion production, together with a reduction in ATP-linked respiration and intracellular ATP levels (down to 60%) detected in mutants fibroblasts point to a general bioenergetics depletion that could affect the mitochondrial dynamics and cell fate. Ultrastructure analysis of BCKDK-deficient fibroblasts shows an increased number of elongated mitochondria, apparently associated with changes in the mediator of inner mitochondria membrane fusion, GTPase OPA1 forms, and in the outer mitochondrial membrane, mitofusin 2/MFN2. Our data support a possible hyperfusion response of BCKDK-deficient mitochondria to stress. Cellular fate also seems to be affected as these fibroblasts show an altered proportion of the cells on G0/G1 and G2/M phases. Knockdown of BCKDK gene in control fibroblasts recapitulates most of these features. Same BCKDK-knockdown in a MSUD patient fibroblasts unmasks the direct involvement of the accelerated BCAAs catabolism in the mitochondrial dysfunction. All these data give us a clue to understand the positive dietary response to an overload of branched-chain amino acids. We hypothesize that a combination of the current therapeutic option with a protocol that considers the oxidative damage and energy expenditure, addressing the patients' individuality, might be useful for the physicians.


Subject(s)
Autistic Disorder/metabolism , Energy Metabolism , Fibroblasts/metabolism , Maple Syrup Urine Disease/metabolism , Mitochondria/metabolism , Superoxides/metabolism , Autistic Disorder/genetics , Autistic Disorder/pathology , Cell Cycle/genetics , Fibroblasts/pathology , GTP Phosphohydrolases/genetics , GTP Phosphohydrolases/metabolism , Humans , Maple Syrup Urine Disease/genetics , Maple Syrup Urine Disease/pathology , Mitochondria/genetics , Mitochondria/pathology , Mitochondrial Proteins/genetics , Mitochondrial Proteins/metabolism
5.
J Inherit Metab Dis ; 35(3): 413-7, 2012 May.
Article in English | MEDLINE | ID: mdl-22350544

ABSTRACT

We describe a new neuroradiologic picture observed during metabolic decompensation in two maple syrup urine disease (MSUD) patients that resembles Wernicke encephalopathy (WE). Clinical observations and the review of the literature regarding WE and MSUD pathophysiology prompted us to hypothesize a pathogenic link between these two disorders. Based on these findings, clinicians and neuroradiologists should be aware of MSUD as a possible predisposing factor of WE in children.


Subject(s)
Maple Syrup Urine Disease/diagnosis , Maple Syrup Urine Disease/genetics , Wernicke Encephalopathy/metabolism , Brain/pathology , Child , Citric Acid Cycle , Female , Genetic Predisposition to Disease , Humans , Italy , Magnetic Resonance Imaging/methods , Male , Maple Syrup Urine Disease/complications , Mitochondria/metabolism , Models, Biological , Sequence Analysis, DNA , Time Factors , Wernicke Encephalopathy/complications
6.
Mol Syndromol ; 3(5): 230-6, 2012 Nov.
Article in English | MEDLINE | ID: mdl-23293581

ABSTRACT

Inherited metabolic diseases (IMDs) belong to the group of rare diseases due to their low individual prevalence. Most of them are inherited in autosomal recessive fashion and represent good candidates for novel therapeutical strategies aimed at recovering partial enzyme function as they lack an effective treatment, and small levels of enzymatic activity have been shown to be associated with improved outcome and milder phenotypes. Recently, a novel therapeutic approach for genetic diseases has emerged, based on the ability of aminoglycosides and other compounds in allowing translation to proceed through a premature termination codon introduced by a nonsense mutation, which frequently constitute a significant fraction of the mutant alleles in a population. In this review we summarize the essentials of what is known as suppression therapy, the different compounds that have been identified by high-throughput screens or developed using a medicinal chemistry approach and the preclinical and clinical trials that are being conducted in general and in the field of IMDs in particular. Several IMDs have shown to be good models for evaluating readthrough compounds using patients' cells carrying nonsense mutations, monitoring for an increase in functional recovery and/or enzyme activity. Overall, the positive results obtained indicate the feasibility of the approach for different diseases and although the levels of protein function reached are low, they may be enough to alleviate the consequences of the pathology. Nonsense suppression thus represents a potential therapy or supplementary treatment for a number of IMD patients encouraging further clinical trials with readthrough drugs with improved functionality and low toxicity.

7.
J Inherit Metab Dis ; 33(Suppl 2): S307-14, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20549364

ABSTRACT

In this work, we review the clinical and genetic data in 14 Latin American propionic acidemia (PA) and 15 methylmalonic aciduria (MMAuria) patients. In the PA patients, we have identified four different changes in the PCCA gene, including one novel one (c.414+5G>A) affecting the splicing process. The PCCB mutational spectrum included two prevalent changes accounting for close to 60% of the mutant alleles studied and one novel change (c.494G>C) which by functional analysis is clearly pathogenic. We have also identified the deep intronic change c.654+462A>G, and the results of the antisense treatment in the patient's cell line confirmed the functional recovery of PCC activity. All PA patients bearing out-of-frame mutations presented the disease earlier while patients bearing in hemizygous fashion p.E168K and p.R165W presented the disease later. Regarding the MMAuria patients, we have found three novel mutations in the MUT gene (c.1068G>A, c.1587_1594del8 and c.593delA) and one in the MMAB gene (c.349-1 G>C). Two patients with MMAuria with homocystinuria cblC type are carriers of the frequent c.271dupA mutation. All mut(0), cblB and cblC patients presented the symptoms early and in general had more neurological complications, while cblA and mut(-) patients exhibited a late-onset presentation, and in general the long-term outcome was better. The results presented in this work emphasize the importance of the genetic analysis of the patients not only for diagnostic purposes but also to research into novel therapies based on the genotype.


Subject(s)
Amino Acid Metabolism, Inborn Errors/genetics , Methylmalonic Acid/urine , Methylmalonyl-CoA Decarboxylase/genetics , Methylmalonyl-CoA Mutase/genetics , Mutation , Propionic Acidemia/genetics , Adolescent , Adult , Age of Onset , Amino Acid Metabolism, Inborn Errors/enzymology , Amino Acid Metabolism, Inborn Errors/mortality , Amino Acid Metabolism, Inborn Errors/therapy , Amino Acid Metabolism, Inborn Errors/urine , Cell Line , Child , Child, Preschool , DNA Mutational Analysis , Genotype , Humans , Infant , Infant, Newborn , Introns , Latin America , Methylmalonyl-CoA Decarboxylase/metabolism , Methylmalonyl-CoA Mutase/metabolism , Phenotype , Propionic Acidemia/enzymology , Propionic Acidemia/mortality , Propionic Acidemia/therapy , Time Factors , Treatment Outcome , Young Adult
8.
J Inherit Metab Dis ; 32 Suppl 1: S91-6, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19319661

ABSTRACT

Creatine transporter deficiency is a recently identified X-linked inborn error of metabolism. The natural course of the disease is not well delineated since clinical data from adult patients have scarcely been reported. A progressive course of the disease has been noted in a few described cases. We report the first two Spanish adult patients with creatine transporter deficiency and compare their clinical phenotype and the evolution of the disease with those of other published cases. The two brothers were identified in a study of a cohort of 610 mentally handicapped male patients. The disease was detected by biochemical studies and confirmed by DNA studies. The most significant clinical features were mental retardation, epilepsy and autistic behaviour, and these symptoms did not worsen, in contrast to other reports. They did not present gastrointestinal problems or movement disorders. Creatine transporter deficiency could be an underdiagnosed metabolic disorder and should be considered in adult patients with mental retardation. Clinical presentation of this disorder showed marked differences among adult patients and the course of the disease was static in our cases. Detection of additional adult patients might allow better understanding of the phenotypic outcome at a later age.


Subject(s)
Amino Acid Transport Disorders, Inborn/genetics , Amino Acid Transport Disorders, Inborn/metabolism , Brain Diseases/genetics , Brain Diseases/metabolism , Nerve Tissue Proteins/deficiency , Nerve Tissue Proteins/genetics , Plasma Membrane Neurotransmitter Transport Proteins/deficiency , Plasma Membrane Neurotransmitter Transport Proteins/genetics , Adult , Aged , Autistic Disorder/genetics , Autistic Disorder/metabolism , Consanguinity , Epilepsy/genetics , Epilepsy/metabolism , Female , Genetic Diseases, X-Linked/genetics , Genetic Diseases, X-Linked/metabolism , Humans , Male , Mental Retardation, X-Linked/genetics , Mental Retardation, X-Linked/metabolism , Mutation , Pedigree , Phenotype
9.
Prenat Diagn ; 24(12): 962-4, 2004 Dec 15.
Article in English | MEDLINE | ID: mdl-15614906

ABSTRACT

In this report we summarize our experience in prenatal diagnosis of propionic acidemia (PA) since 1987. Overall, we have investigated 25 pregnancies at risk from 19 unrelated families. Until genetic structure of the genes involved in PA was elucidated, prenatal diagnosis has been successfully performed by means of metabolite quantitation and/or enzymatic assays in foetal issue. Today, direct propionyl-CoA carboxylase activity assay in combination with molecular analysis in chorion villi can be regarded as a fast and reliable method of choice for prenatal diagnosis of this organic acidemia.


Subject(s)
Metabolism, Inborn Errors/diagnosis , Metabolism, Inborn Errors/genetics , Prenatal Diagnosis/methods , Propionates/blood , Amniotic Fluid/cytology , Cells, Cultured , Chorionic Villi/enzymology , Chromones , DNA Mutational Analysis , Female , Humans , Methylmalonyl-CoA Decarboxylase/genetics , Mutation , Polymerase Chain Reaction , Pregnancy , Propionic Acidemia
10.
Mol Genet Metab ; 83(1-2): 28-37, 2004.
Article in English | MEDLINE | ID: mdl-15464417

ABSTRACT

Mutations in the PCCA or PCCB genes, encoding both subunits of propionyl-CoA carboxylase, result in propionic acidemia, a life-threatening inborn error of metabolism with autosomal recessive inheritance. To date, 41 mutations in the PCCA gene and 54 in the PCCB gene have been reported, most of them single base substitutions causing amino acid replacements, and a variety of small insertions and deletions and splicing defects. A greater heterogeneity is observed in the PCCA gene, specially in Caucasians, with no prevalent mutations, while in the Japanese population three mutations account for more than half of the alleles studied. For the PCCB gene a limited number of mutations is responsible for the majority of the alleles characterized in both Caucasian and Oriental populations. These two populations show a different mutational spectrum, only sharing some involving CpG dinucleotides probably as recurrent mutational events. Functional characterization of the mutant missense alleles has been accomplished using different prokaryotic and eukaryotic systems, and the structural consequences have been analyzed in the available crystal models. For the PCCA gene, the main molecular effect of the expressed mutations is related to protein instability, except two mutations in the active site predictably affecting ATP binding. In the PCCB gene the majority of the analyzed mutations are predicted to alter the active site conformation resulting in diminished activity. A few carboxy-terminal PCCB mutations affect the interaction between subunits and the assembly with PCCA to form a functional PCC oligomer. The amount of normal transcripts resulting from some PCCA and PCCB splicing mutations has also been analyzed. Overall, the data generated from the expression analysis reveal potential genotype-phenotype correlations for this clinically heterogeneous disorder.


Subject(s)
Amino Acid Metabolism, Inborn Errors/genetics , Carbon-Carbon Ligases/chemistry , Carbon-Carbon Ligases/genetics , Genetic Variation , Mutation , Propionates/metabolism , Alleles , Amino Acid Metabolism, Inborn Errors/metabolism , Binding Sites , Carbon-Carbon Ligases/metabolism , Humans , Models, Molecular , Phenotype , Protein Conformation , Protein Subunits/genetics , Protein Subunits/metabolism
11.
Mol Genet Metab ; 80(3): 315-20, 2003 Nov.
Article in English | MEDLINE | ID: mdl-14680978

ABSTRACT

Methylcrotonylglycinuria (MCG; MIM 210200) is an autosomal recessive inherited human disorder caused by the deficiency of 3-methylcrotonyl-CoA carboxylase (MCC, E.C.6.4.1.4), involved in leucine catabolism. This mitochondrial enzyme is one of the four biotin-dependent carboxylases known in humans. MCC is composed of two different types of subunits, alpha and beta, encoded by the nuclear genes MCCA and MCCB, respectively, recently cloned and characterized. Several mutations have been identified, in both genes, the majority are missense mutations along with splicing mutations and small insertions/deletions. We have expressed four missense mutations, two MCCA and two MCCB mapping to highly evolutionarily conserved residues, by transient transfection of SV40-transformed deficient fibroblasts in order to confirm their pathogenic effect. All the missense mutations expressed resulted in null or severely diminished MCC activity providing direct evidence that they are disease-causing ones. The MCCA mutations have been analysed in the context of three-dimensional structural information modelling the changes in the crystallized biotin carboxylase subunit of the Escherichia coli acetyl-CoA carboxylase. The apparent severity of all the MCC mutations contrasts with the variety of the clinical phenotypes suggesting that there are other cellular and metabolic unknown factors that affect the resulting phenotype.


Subject(s)
Carbon-Carbon Ligases/deficiency , Carbon-Carbon Ligases/genetics , Gene Expression , Mutation, Missense/genetics , Amino Acid Sequence , Conserved Sequence/genetics , Fibroblasts , Genetic Vectors , Humans , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Structure, Quaternary , Sequence Alignment , Sequence Analysis, DNA , Simian virus 40 , Transfection
12.
Biochim Biophys Acta ; 1638(1): 43-9, 2003 May 20.
Article in English | MEDLINE | ID: mdl-12757933

ABSTRACT

Propionic acidemia (PA) is a recessive disorder caused by a deficiency of propionyl-CoA carboxylase (PCC), a dodecameric enzyme composed of two different proteins alpha-PCC and beta-PCC, nuclear encoded by the PCCA and PCCB genes, respectively. Mutations in either gene cause PA and to date, up to 47 different allelic variations in the PCCB gene have been identified in different populations. In this work, we describe the expression studies of 18 PCCB sequence changes in order to elucidate their functional consequences. We have used a PCCB-deficient transformed fibroblast cell line to target the wild-type and mutant proteins to their physiological situation, analysing the effect of the mutations on PCC activity and protein stability. Of the 18 mutant proteins tested for activity, those carrying the L17M and A497V substitutions showed an activity similar to the wild-type one, which proves that these changes do not have any effect on protein activity. The other 16 mutant proteins exhibited two different functional behaviours, 3 retained substantial activity (K218R, R410W and N536D), and the remaining 13 proteins showed null or very low activity. Western blot analysis demonstrated instability only for the L519P, R512C and G112D mutant proteins. We have proved the pathogenicity of R67S, R165Q and G112D mutation in PCCB gene, expressed for the first time in this work. The information derived from the expression analysis is discussed in the phenotype and genotype context in order to improve the knowledge of this complex disease.


Subject(s)
Amino Acid Metabolism, Inborn Errors/enzymology , Amino Acid Metabolism, Inborn Errors/genetics , Carbon-Carbon Ligases/genetics , Mutation , Propionates/blood , Amino Acid Sequence , Amino Acid Substitution , Carbon-Carbon Ligases/chemistry , Carbon-Carbon Ligases/deficiency , Cell Line , Fibroblasts/enzymology , Gene Expression , Genotype , Humans , In Vitro Techniques , Molecular Sequence Data , Phenotype , Point Mutation , Protein Subunits , Sequence Homology, Amino Acid , Skin/enzymology , Transfection
13.
Mol Genet Metab ; 78(1): 59-67, 2003 Jan.
Article in English | MEDLINE | ID: mdl-12559849

ABSTRACT

Propionic acidemia is an inherited metabolic disease caused by the deficiency of the mitochondrial protein propionyl-CoA carboxylase (PCC), one of the four biotin-dependent enzymes. PCC is a multimeric protein composed of two different alpha- and beta-PCC subunits, nuclearly encoded by the PCCA and PCCB genes, respectively. Mutations in either gene cause the clinically heterogeneous disease propionic acidemia. In this work we describe the mutational analysis of PCCA and PCCB deficient patients from different European countries (Spain, Italy, Belgium, Croatia, and Austria) and from America (mainly USA). We report 24 novel PA mutations, nine affecting the PCCA gene and 15 affecting the PCCB gene. They include six missense mutations, one nonsense mutation, one point exonic mutation affecting splicing, seven splicing mutations affecting splice sequences, and nine short insertions or deletions, only two in-frame. We have found a highly heterogenous spectrum of PCCA mutations, most of the PCCA deficient patients are homozygous carrying a unique genotype. The PCCA mutational spectrum includes a high proportion of short insertions or deletions affecting one nucleotide. In the PCCA mutant alleles analyzed we have also found one single nucleotide change, a novel nonsynonymous SNP. On the other hand, the PCCB deficient patients carry a more reduced spectrum of mutations, 50% of them are missense. This work represents an extensive update of the mutational study of propionic acidemia providing important information about the worldwide distribution of PA mutations and representing another essential part in the study of the phenotype-genotype correlations for the prediction of the metabolic outcome and for the implementation of treatments tailored to each PA patient.


Subject(s)
Carboxy-Lyases/genetics , Metabolism, Inborn Errors/enzymology , Propionates/blood , Alternative Splicing/genetics , Austria , Base Sequence , Belgium , Carboxy-Lyases/deficiency , Codon, Nonsense , Croatia , DNA/chemistry , DNA/genetics , DNA Mutational Analysis , DNA, Complementary/chemistry , DNA, Complementary/genetics , Humans , Isoenzymes/deficiency , Isoenzymes/genetics , Italy , Metabolism, Inborn Errors/blood , Metabolism, Inborn Errors/genetics , Methylmalonyl-CoA Decarboxylase , Mitochondria/enzymology , Mutagenesis, Insertional , Mutation , Mutation, Missense , North America , Polymorphism, Single Nucleotide , Protein Subunits/deficiency , Protein Subunits/genetics , Sequence Deletion , Spain
14.
Mol Genet Metab ; 75(3): 276-9, 2002 Mar.
Article in English | MEDLINE | ID: mdl-11914040

ABSTRACT

Propionic acidemia can result from mutations in the PCCA or PCCB genes encoding the alpha and beta subunits, respectively, of propionyl-CoA carboxylase. We have developed a method based on complementation of the enzyme defect using a lipid-mediated transient transfection of the normal human PCCA or PCCB cDNA into primary fibroblasts. We demonstrate the reliability of this method for identification of the defective PCC gene in order to unequivocally approach the mutational analysis in the corresponding PCCA and PCCB genes.


Subject(s)
Carboxy-Lyases/genetics , Metabolism, Inborn Errors/genetics , Propionates/blood , Carboxy-Lyases/metabolism , Cell Line , Gene Expression Regulation, Enzymologic , Genetic Complementation Test , Humans , Metabolism, Inborn Errors/enzymology , Methylmalonyl-CoA Decarboxylase , Mutation , Plasmids/genetics , Transfection
15.
Mol Genet Metab ; 74(4): 476-83, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11749052

ABSTRACT

Propionic acidemia is an inherited metabolic disorder caused by deficiency of propionyl-CoA carboxylase, a dodecameric enzyme composed of alpha-PCC and beta-PCC subunits (encoded by genes PCCA and PCCB) that have been associated with a number of mutations responsible for this disease. To clarify the molecular effect associated with gene alterations causing propionic acidemia, 12 different mutations affecting the PCCB gene (R67S, S106R, G131R, R165W, R165Q, E168K, G198D, A497V, R512C, L519P, W531X, and N536D) were analyzed for their involvement in alpha-beta heteromeric and beta-beta homomeric assembly. The experiments were performed using the mammalian two-hybrid system, which was assayed at two different temperatures to distinguish between mutations directly involved in interaction and those probably affecting polypeptide folding, thus indirectly affecting the correct assembly. Mutations R512C, L519P, W531X, and N536D, located at the carboxyl-terminal end of the PCCB gene, were found to inhibit alpha-beta heteromeric and/or the beta-beta homomeric interaction independently of the cultivation temperature, reflecting their primary effect on the assembly. Two mutations A497V and R165Q did not affect either heteromeric or homomeric assembly. The remaining mutations (R67S, S106R, G131D, R165W, E168K, and G198D), located in the amino-terminal region of the beta-polypeptide, resulted in normal interaction levels only when expressed at the lower temperature, suggesting that these changes could be considered as folding defects. From these results and the clinical manifestations associated with patients bearing the mutations described above, several genotype-phenotype correlations may be established. In general, the temperature-sensitive mutations are associated with a less severe, although variable phenotype. This could correlate with the recent hypothesis that the effect of folding mutations can be influenced by the capacity of the cellular protein quality control machinery, which provides clues to our understanding of the variability of the clinical symptoms observed among the patients bearing these mutations.


Subject(s)
Carboxy-Lyases/genetics , Mutation , Amino Acid Metabolism, Inborn Errors/blood , Amino Acid Metabolism, Inborn Errors/genetics , Animals , COS Cells , Carboxy-Lyases/chemistry , Carboxy-Lyases/deficiency , Genotype , Humans , Methylmalonyl-CoA Decarboxylase , Phenotype , Plasmids , Propionates/blood , Protein Structure, Quaternary/genetics , Protein Subunits , Recombinant Proteins , Temperature
16.
Am J Hum Genet ; 68(2): 334-46, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11170888

ABSTRACT

3-Methylcrotonylglycinuria is an inborn error of leucine catabolism and has a recessive pattern of inheritance that results from the deficiency of 3-methylcrotonyl-CoA carboxylase (MCC). The introduction of tandem mass spectrometry in newborn screening has revealed an unexpectedly high incidence of this disorder, which, in certain areas, appears to be the most frequent organic aciduria. MCC, an heteromeric enzyme consisting of alpha (biotin-containing) and beta subunits, is the only one of the four biotin-dependent carboxylases known in humans that has genes that have not yet been characterized, precluding molecular studies of this disease. Here we report the characterization, at the genomic level and at the cDNA level, of both the MCCA gene and the MCCB gene, encoding the MCC alpha and MCC beta subunits, respectively. The 19-exon MCCA gene maps to 3q25-27 and encodes a 725-residue protein with a biotin attachment site; the 17-exon MCCB gene maps to 5q12-q13 and encodes a 563-residue polypeptide. We show that disease-causing mutations can be classified into two complementation groups, denoted "CGA" and "CGB." We detected two MCCA missense mutations in CGA patients, one of which leads to absence of biotinylated MCC alpha. Two MCCB missense mutations and one splicing defect mutation leading to early MCC beta truncation were found in CGB patients. A fourth MCCB mutation also leading to early MCC beta truncation was found in two nonclassified patients. A fungal model carrying an mccA null allele has been constructed and was used to demonstrate, in vivo, the involvement of MCC in leucine catabolism. These results establish that 3-methylcrotonylglycinuria results from loss-of-function mutations in the genes encoding the alpha and beta subunits of MCC and complete the genetic characterization of the four human biotin-dependent carboxylases.


Subject(s)
Amino Acid Metabolism, Inborn Errors/genetics , Carbon-Carbon Ligases/genetics , Leucine/metabolism , Adult , Amino Acid Metabolism, Inborn Errors/enzymology , Amino Acid Metabolism, Inborn Errors/pathology , Amino Acid Sequence , Aspergillus nidulans/drug effects , Aspergillus nidulans/genetics , Aspergillus nidulans/growth & development , Base Sequence , Blotting, Northern , Carbon-Carbon Ligases/metabolism , Child, Preschool , Chromosome Mapping , Chromosomes, Human, Pair 3/genetics , Chromosomes, Human, Pair 5/genetics , DNA/chemistry , DNA/genetics , DNA Mutational Analysis , DNA, Complementary/chemistry , DNA, Complementary/genetics , Exons , Female , Gene Expression Regulation, Enzymologic , Genes/genetics , Humans , In Situ Hybridization, Fluorescence , Infant , Introns , Isoenzymes/genetics , Isoenzymes/metabolism , Leucine/pharmacology , Molecular Sequence Data , Mutation , Protein Subunits , RNA/genetics , RNA/metabolism , Radiation Hybrid Mapping , Sequence Analysis, DNA , Tissue Distribution , Transcription, Genetic
18.
Eur J Hum Genet ; 8(3): 187-94, 2000 Mar.
Article in English | MEDLINE | ID: mdl-10780784

ABSTRACT

Propionic acidaemia (PA) is an autosomal recessive disorder caused by mutations in either of the PCCA or PCCB genes which encode the alpha and beta subunits, respectively, of the mitochondrial enzyme propionyl-CoA carboxylase (PCC). In this work we have examined the biochemical findings and clinical outcome of 37 Spanish PA patients in relation to the mutations found in both PCCA and PCCB genes. We have detected 27 early-onset and 101 late-onset cases, showing remarkably similar biochemical features without relation to either the age of onset of the disease or the defective gene they have. Twenty-one of the patients have so far survived and three of them, now adolescents, present normal development. Different biochemical procedures allowed us to identify the defective gene in 9 PCCA deficient and 28 PCCB deficient patients. Nine putative disease-causing mutations accounting for 77.7% of mutant alleles were identified among PCCA deficient patients, each one carrying a unique genotypic combination. Of PCCB mutant alleles 98% were characterised. Four common mutations (ins/del, E168K, 1170insT and A497V) were found in 38/52 mutant chromosomes investigated, whereas the remainder of the alleles harbour 12 other different mutations. By examining the mutations identified both in PCCA and PCCB genes and the clinical evolution of patients, we have found a good correlation between certain mutations which can be considered as null with a severe phenotype, while certain missense mutations tend to be related to the late and mild forms of the disease. Expression studies, particularly of the missense mutations identified are necessary but other genetic and environmental factors probably contribute to the phenotypic variability observed in PA.


Subject(s)
Carboxy-Lyases/deficiency , Adult , Biotin/metabolism , Blotting, Northern , Blotting, Western , Carboxy-Lyases/genetics , Cells, Cultured , DNA Mutational Analysis , Female , Genetic Complementation Test , Genotype , Humans , Male , Methylmalonyl-CoA Decarboxylase , Phenotype , Spain , Treatment Outcome , Tritium
19.
Hum Mutat ; 14(4): 275-82, 1999.
Article in English | MEDLINE | ID: mdl-10502773

ABSTRACT

Propionic acidemia is an inborn error of metabolism caused by a deficiency of propionyl-CoA carboxylase, a heteropolymeric mitochondrial enzyme involved in the catabolism of branched chain amino acids, odd-numbered chain length fatty acids, cholesterol, and other metabolites. The enzyme is composed of alpha and beta subunits which are encoded by the PCCA and PCCB genes, respectively. Mutations in both genes can cause propionic acidemia. The identification of the responsible gene, previous to mutation analysis, can be performed by complementation assay or, in some instances, can be deduced from peculiarities relevant to either gene, including obtaining normal enzyme activity in the parents of many patients with PCCB mutations, observing combined absence of alpha and beta subunits by Western blot of many PCCA patients, as well as conventional mRNA-minus result of Northern blots for either gene or beta subunit deficiency in PCCB patients. Mutations in both the PCCA and PCCB genes have been identified by sequencing either RT-PCR products or amplified exonic fragments, the latter specifically for the PCCB gene for which the genomic structure is available. To date, 24 mutations in the PCCA gene and 29 in the PCCB gene have been reported, most of them single base substitutions causing amino acid replacements and a variety of splicing defects. A greater heterogeneity is observed in the PCCA gene-no mutation is predominant in the populations studied-while for the PCCB gene, a limited number of mutations is responsible for the majority of the alleles characterized in both Caucasian and Oriental populations. These two populations show a different spectrum of mutations, only sharing some involving CpG dinucleotides, probably as recurrent mutational events. Future analysis of the mutations identified, of their functional effect and their clinical relevance, will reveal potential genotype-phenotype correlations for this clinically heterogeneous disorder.


Subject(s)
Amino Acid Metabolism, Inborn Errors/genetics , Carboxy-Lyases/genetics , Mutation , Propionates/blood , Alternative Splicing , Frameshift Mutation , Humans , Macromolecular Substances , Methylmalonyl-CoA Decarboxylase , Mutation, Missense , Polymorphism, Genetic , Sequence Deletion
20.
Hum Mutat ; 14(1): 89-90, 1999.
Article in English | MEDLINE | ID: mdl-10447268

ABSTRACT

Propionyl-CoA carboxylase (PCC) is a biotin-dependent enzyme located in the mitochondrial matrix. Mutations in the PCCA and PCCB genes, which encode the a and b subunits of this heteropolymer, result in propionic acidemia (PA). We report the molecular analysis of b-deficient patients from Spain and Austria. Subjects were screened for defects affecting the PCCB gene by direct sequencing from genomic PCR products, restriction digests and mRNA analysis by RT-PCR. Study by western blot of the presence of immunoreactive b-PCC protein was also performed. A total of four novel sequence variations were found including the point mutations V205D, and M442T, and the frameshift mutation 790-791insG. Additionally, a new point change, L17M, was identified on the same allele as 790-791insG. The missense changes described above were not found in at least 40 control chromosomes analyzed. The Austrian patients were homozygous for V205D. One of the Spanish subjects was heterozygous for M442T and the known mutation c1170insT. The other Spanish patient carried L17M+790-791insG on one allele, and the described mutation E168K on the other mutant chromosome. The mutations V205D and M442T were confirmed at RNA level and also we have detected the presence of immunoreactive b-PCC protein translated from these mutant alleles. The patient having L17M+790-791insG and E168K also presented immunoreactive b-PCC protein. However, no cDNA product was obtained from the chromosome carrying L17M+790-791insG. We propose that 790-791insG, which causes a frameshift and a premature stop codon, is responsible for this finding. In any case, the translation from this mutant cDNA would produce a severity truncated peptide and, in consequence, a non-functional protein. Expression analysis of all these changes will help us to clarify their structural/functional consequences.


Subject(s)
Amino Acid Metabolism, Inborn Errors/genetics , Carbon-Carbon Ligases/deficiency , Carbon-Carbon Ligases/genetics , Mutation , Propionates/blood , Amino Acid Metabolism, Inborn Errors/enzymology , Austria , Humans , Polymerase Chain Reaction/methods , Sequence Analysis, DNA , Spain
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