Phenotypic and genetic diversity of domestic yak (Bos grunniens) in high-altitude rangelands of Gilgit-Baltistan, Pakistan.

Due to climate change, irrigated agriculture may become restricted in the mountain valleys in northern Pakistan in the future. Hence, the importance of yak (Bos grunniens) keeping in the mountain ranges as risk-mitigating strategy for mountain dwellers will potentially increase. However, little is known about the current status of the domestic yak in this region. We therefore used phenotypic characteristics and 13 microsatellite loci to determine the phenotypic differences and the level of genetic differentiation between populations of six valleys. Larger body measures and partially different physical appearance were observed in Shimshal and Khaplu yaks, especially when compared with yaks in the Chapurson valley. Overall, the mean observed heterozygosity was similar to the mean expected heterozygosity. Average genetic diversity was highest in the Hopar population and lowest in the Haramosh population. A low FIS value indicated that individuals were less related than expected under a model of random mating. Three distinct genetic clusters were found for the six yak populations under study. Genetic distances were largest between Shimshal and Khaplu populations, and lowest between populations of Phandar and Hopar. It is concluded that yaks of Shimshal, Khaplu and Haramosh valleys were genetically distinct from yak populations in Chapurson, Hopar and Phandar valleys, indicating that the free-range conditions and pastoral yak rearing system in the region have preserved the underlying genetic diversity of the yak populations.

Development of a breeding program for improving the milk yield performance of Butana cattle under smallholder production conditions using a stochastic simulation approach.

Butana is one of the local dairy cattle breeds of Sudan commonly kept by smallholder producers. This breed has been strongly promoted to advance the dairy production sector in the country. The main problem, however, is the lack of a systematic breeding program that involves smallholder producers. The aim of the current study was to identify the most promising design for a breeding program to improve the milk yield performance of Butana cattle under smallholder production conditions. In total, 3 breeding scenarios, including (1) the use of farm bulls, (2) the use of village bulls, and (3) the rotational use of village bulls within village groups, were simulated using a stochastic simulation approach. For each breeding scenario, 3 selection methods for bulls were considered, namely random mating, phenotypic selection, and selection based on estimated breeding value (EBV). The results showed that no genetic gain was realized with random mating in all breeding scenarios. In the farm bull breeding scenario, annual genetic gain (standard deviation units) ranged from 0.01 to 0.19 (phenotypic selection) and from 0.01 to 0.39 (selection based on EBV). In the village bull breeding scenarios, the annual genetic gain ranged from 0.01 to 0.21 (phenotypic selection) and 0.01 to 0.45 (selection based on EBV). The lowest genetic gain was realized for the rotational use of village bulls among villages within groups. Through the rotational use of village bulls, however, a higher genetic variance was maintained than in the farm and village bull breeding scenarios. We concluded that a village bull breeding program with selection based on EBV of young bulls was the most promising breeding design for achieving the breeding goal. Further studies are needed to assess the organizational feasibility of such a breeding program to ensure the participation of smallholder producers and its sustainability.

Exploration of production conditions: a step towards the development of a community-based breeding program for Butana cattle.

In Sudan, many Butana cattle farmers practice indiscriminate crossbreeding to improve the milk yield performance of cows, as organized breeding programs are lacking. Objectives of this study were to identify the current production conditions of Butana cattle and to determine farmers' production objectives and trait preferences using a field survey. The overall aim was to explore the possibility of establishing a community-based breeding program for the genetic improvement of the breed. A semi-structured questionnaire and field visits were used to collect data from 202 Butana cattle owners. Data were analyzed using chi-squared test, multiple response analysis, and binary logistic regression. Our results showed that Butana cattle farmers mainly raised their animals for milk production. On a five-point scale (5 = most important), milk yield (4.6 ± 0.05), growth performance (4.0 ± 0.07), and lactation length (3.9 ± 0.08) were highly preferred for future development of the breed. One-third of the farmers kept crossbred cattle with on average 4 crossbred animals per herd. About two-thirds of respondents were willing to adopt crossbreeding using exotic breeds to increase milk performance and about the same proportion were willing to exchange breeding bulls and establish farmers' associations. None of the respondents kept written performance records. However, educated farmers were more likely to adopt record keeping. Farmers' willingness to engage in associations could be useful for the establishment of a community-based breeding program. Based on the current farmers' production objectives, the future breeding program should emphasize increasing milk production of the Butana cattle by using improved Butana bulls in village herds.

Selection Decisions and Trait Preferences for Local and Imported Cattle and Sheep Breeds in Peri-/Urban Livestock Production Systems in Ouagadougou, Burkina Faso.

BACKGROUND: Participatory approaches of designing livestock breeding programs for tropical production systems have been extensively applied for rural livestock, whereas the peri-/urban livestock production sector tends to be widely neglected. In order to ensure the viability of the commercial cattle and sheep production sector in Ouagadougou, Burkina Faso, structured breed improvement programs are needed. The study aims to better understand selection decisions of cattle and sheep breeders and their trait preferences for local and imported breeds. METHODS: 49 cattle and 31 sheep breeders in peri-/urban areas of the city were approached in personal interviews. Data were analyzed in R version 3.5.1. RESULTS: The main motivation for keeping cattle and sheep was to generate regular cash income through the selling of milk (cattle only) and surplus animals. Some (modern) breeders used imported breeds because of higher production performances. For imported cattle breeds, improved breeding technologies and management were applied to further enhance production outputs. Nevertheless, local livestock breeds were predominantly used due to their good adaptation. CONCLUSIONS: Selection decisions and trait preferences for local and imported cattle and sheep breeds were strongly based on performance traits. Especially sheep breeders, but also traditional cattle breeders, did not record performance traits and did not take conscious breeding decisions.

Genetic and nongenetic factors affecting on-farm performance of peri-urban dairy cattle in west Africa.

Population growth and urbanization lead to an increasing demand for milk in sub-Saharan Africa, but the production potential of the 65.9 million dairy cows in the region is far from being fully exploited to meet this demand. With the aim to support decision-making for breeding and management of dairy cattle in commercial farms, we performed a comparative study of daily milk offtake, chemical composition of milk, prevalence of metabolic disorders, and body weight development of local and crossbred cattle genotypes in peri-urban commercial farms in Ouagadougou, Burkina Faso. We used data that were collected during regular visits of 7 farms in peri-urban areas of the city over a 16-mo period. Animals belonged to 3 breed groups (123 local zebu, 49 Sahelian crossbred, and 42 European crossbred cows). We applied a mixed model approach to evaluate the genetic and seasonal effects on daily milk offtake, milk composition, and body weight. Nonlinear growth models were fitted to model the body weight development according to genotype, season, and reproductive status of cows. The milk fat-to-milk protein ratio was used to determine the prevalence of ketosis and acidosis. Daily milk offtake from crossbred cows was 3.1- to 4.3-fold higher than from local zebu cows; furthermore, crossbred cows had a higher body weight and maturity rate than local zebu cows. In contrast, no genotype differences were found in milk fat and milk protein percentage and prevalence of ketosis and acidosis. Additionally, seasonal effects suggested that higher production performances could be realized through improved management of dairy cows, particularly in the late dry and rainy season. Improved feeding management could also reduce the risk of metabolic disorders. In summary, production performances of crossbred dairy cows in peri-urban production systems in Burkina Faso are higher as compared with local zebu cows. However, environmental effects suggest that further studies are needed to systematically assess genotype by environment interactions to guide the development of sustainable breeding and management programs for dairy cattle in Burkina Faso.

Phenotypic diversity, major genes and production potential of local chickens and guinea fowl in Tamale, northern Ghana.

OBJECTIVE: Our study provides information on phenotypes of local chickens and guinea fowl and their body measures as well as on major genes in local chickens in northern Ghana. METHODS: Qualitative and morphometric traits were recorded on 788 local chickens and 394 guinea fowl in urban households in Tamale, Ghana. RESULTS: The results showed considerable variation of color traits and numerous major genes in local chickens, while color variations and related genotypes in guinea fowl were limited. In local chickens, white was preferred for plumage, whereas dark colors were preferred for beak and shanks. More than half of the chickens carried at least one major gene, but the contributions of single gene carriers were low. All calculated allele frequencies were significantly lower than their expected Mendelian allele frequencies. We observed higher mean body weight and larger linear body measures in male as compared to female chickens. In female chickens, we detected a small effect of major genes on body weight and chest circumference. In addition, we found some association between feather type and plumage color. In guinea fowl, seven distinct plumage colors were observed, of which pearl grey pied and pearl grey were the most prevalent. Male pearl grey pied guinea fowl were inferior to pearl grey and white guinea fowl in terms of body weight, body length and chest circumference; their shank length was lower than that of pearl grey fowl. CONCLUSION: Considerable variation in qualitative traits of local chickens may be indicative of genetic diversity within local chicken populations, but major genes were rare. In contrast, phenotypic and genetic diversity in local guinea fowl is limited. Broader genetic diversity studies and evaluation of trait preferences of local poultry producers are required for the design of appropriate breeding programs.

Constraints and challenges of meeting the water requirements of livestock in Ethiopia: cases of Lume and Siraro districts.

Compared to the total water use in livestock production systems, water for livestock drinking is small in amount but is an important requirement for health and productivity of animals. This study was carried out to assess constraints and challenges of meeting drinking water requirements of livestock in rural mixed smallholder crop-livestock farming districts in the Ethiopian Rift Valley area. Data was collected by individual interviews with randomly selected respondents and farmer group discussions. Farmers ranked feed and water scarcity as the two most important constraints for livestock husbandry, although the ranking order differed between districts and villages. Poor quality water was a concern for the communities in proximity to urban settlements or industrial establishments. Water provision for livestock was challenging during the dry season, since alternative water sources dried up or were polluted. Though rainwater harvesting by dugout constructions was practiced to cope with water scarcity, farmers indicated that mismanagement of the harvested water was posing health risks on both livestock and people. A sustainable water provision for livestock in the area, thus, depends on use of different water sources (intermittent or perennial) that should be properly managed. Industrial establishments should adopt an environment-friendly production to minimize pollution of water resources used for livestock consumption. Technical support to farmers is required in proper design and use of existing rainwater harvesting systems. Further investigations are recommended on effect of poor quality water (perceived by farmers) on performance of livestock.

Production objectives and breeding goals of Sahiwal cattle keepers in Kenya and implications for a breeding programme.

The Sahiwal breed has been used for upgrading the East African Zebu (EAZ) for improved milk production and growth performance in the southern rangelands of Kenya. Main users of this breed are Maasai pastoralists. Until now, there has been no deliberate effort to understand why these pastoralists specifically prefer to keep Sahiwal genetic resources as well as which traits are considered important by them and what is the underlying reason for this. However, this information is regarded vital for further development of the breed. A survey was conducted between May and October 2009 among Maasai pastoralists in Kajiado and Narok counties in the Southern part of Kenya, and private ranches and government farms to identify production objectives and breeding goals of Sahiwal cattle producers. Sahiwal genetic resources were mainly kept for domestic milk production and for revenue generation through milk sales and live animals. To a limited extent, they were kept for breeding and also for multiple objectives that included insurance against risks and social functions. Production aims were influenced to varying extents by various household and farmer characteristics. Sahiwal cattle and their crosses were generally perceived to be better with respect to productive traits and fertility traits when compared to the EAZ. However, the EAZ was rated higher with respect to adaptation traits. The breeding objective traits of primary importance were high milk yield and big body size, good reproductive efficiency and relatively good adaptation to local production conditions. Performance and functional traits are important breeding goals that play a major role in fulfilling the multiple production objectives. This forms the basis for the optimisation of a breeding programme for sustainable utilisation to meet the needs of Sahiwal cattle producers.