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1.
Mikrobiol Z ; 76(3): 2-10, 2014.
Article in Russian | MEDLINE | ID: mdl-25007437

ABSTRACT

Phylogenetic analysis of aerobic chemoorganotrophic bacteria of the two extreme regions (Dead Sea and West Antarctic) was performed on the basis of the nucleotide sequences of the 16S rRNA gene. Thermotolerant and halotolerant spore-forming bacteria 7t1 and 7t3 of terrestrial ecosystems Dead Sea identified as Bacillus licheniformis and B. subtilis subsp. subtilis, respectively. Taking into account remote location of thermotolerant strain 6t1 from closely related strains in the cluster Staphylococcus, 6t1 strain can be regarded as Staphylococcus sp. In terrestrial ecosystems, Galindez Island (Antarctic) detected taxonomically diverse psychrotolerant bacteria. From ornithogenic soil were isolated Micrococcus luteus O-1 and Microbacterium trichothecenolyticum O-3. Strains 4r5, 5r5 and 40r5, isolated from grass and lichens, can be referred to the genus Frondihabitans. These strains are taxonomically and ecologically isolated and on the tree diagram form the joint cluster with three isolates Frondihabitans sp., isolated from the lichen Austrian Alps, and psychrotolerant associated with plants F. cladoniiphilus CafT13(T). Isolates from black lichen in the different stationary observation points on the south side of a vertical cliff identified as: Rhodococcus fascians 181n3, Sporosarcina aquimarina O-7, Staphylococcus sp. 0-10. From orange biofilm of fouling on top of the vertical cliff isolated Arthrobacter sp. 28r5g1, from the moss-- Serratia sp. 6r1g. According to the results, Frondihabitans strains most frequently encountered among chemoorganotrophic aerobic bacteria in the Antarctic phytocenoses.


Subject(s)
DNA, Bacterial/isolation & purification , Phylogeny , RNA, Ribosomal, 16S/isolation & purification , Seawater/microbiology , Adaptation, Physiological , Aerobiosis , Antarctic Regions , Arthrobacter/classification , Arthrobacter/genetics , Arthrobacter/isolation & purification , Bacillus subtilis/classification , Bacillus subtilis/genetics , Bacillus subtilis/isolation & purification , Cold Temperature , DNA, Bacterial/classification , DNA, Bacterial/genetics , Genes, rRNA , Hot Temperature , Mediterranean Region , Micrococcus luteus/classification , Micrococcus luteus/genetics , Micrococcus luteus/isolation & purification , RNA, Ribosomal, 16S/classification , RNA, Ribosomal, 16S/genetics , Rhodococcus/classification , Rhodococcus/genetics , Rhodococcus/isolation & purification , Salt Tolerance , Serratia/classification , Serratia/genetics , Serratia/isolation & purification , Sporosarcina/classification , Sporosarcina/genetics , Sporosarcina/isolation & purification , Staphylococcus/classification , Staphylococcus/genetics , Staphylococcus/isolation & purification
2.
Mikrobiol Z ; 75(3): 3-11, 2013.
Article in Russian | MEDLINE | ID: mdl-23866581

ABSTRACT

Such extreme factors as UV radiation, high temperature and salinity, and also the small amount of accessible water have an influence on microorganisms of coastal ecosystems of the Dead Sea. Resistance to these factors of the microorganisms isolated from ecosystems of this region (vertical steep gorge around the Dead Sea, clay-salt plain and black highly mineralized muds) is studied. Aerobic, chemoorganotrophic, thermotolerant, moderately halophilic bacteria which, according to their morphological and physiological properties, are similar to species Gracilibacillus halotolerans, Salimicrobium album and genus Caryophanon have been isolated from these ecosystems. All strains grew at 0-10% of NaCl in the medium (one strain--at 15% of NaCl), in the range of 30-50 degrees C. Resistance to UV radiation has been revealed in all the investigated bacteria Lethal doses of UV (LD90 and LD99.99) for spore-forming strains of genus Gracilibacillus were 100-170 and 1100-1500 J/m2, respectively; for strain Salimicrobium 6t1 (does not form spores)--70 and 400 J/m2; for the strain lt4 (genus Caryophanon), forming filamentous (or trychomes)--150 and 1400 J/m2. Some strains of genus Gracilibacillus had strong antagonistic effect on conditionally pathogenic test cultures Staphylococcus aureus 209p and Candida albicans UCM Y-690. It is conceivable that resistance of microorganisms of coastal ecosystems of the Dead Sea to extreme factors was generated under the influence of abiotic (physical and chemical) factors typical of this region.


Subject(s)
Adaptation, Physiological , Bacteria/growth & development , Biota , Oceans and Seas , Seawater/microbiology , Water Microbiology , Adaptation, Physiological/drug effects , Adaptation, Physiological/radiation effects , Bacteria/drug effects , Bacteria/radiation effects , Hot Temperature , Israel , Microbial Interactions/drug effects , Microbial Interactions/radiation effects , Microbial Viability/drug effects , Microbial Viability/radiation effects , Microscopy, Phase-Contrast , Salinity , Seawater/chemistry , Ultraviolet Rays
3.
Mikrobiol Z ; 75(6): 3-9, 2013.
Article in Russian | MEDLINE | ID: mdl-24450178

ABSTRACT

The aerobic chemoorganotrophic bacteria, dominating in soils and phytocenosis of the Antarctic Region, on combination of morphological and biochemical properties belong to several taxons of Bacteria domain. Gram-negative strains 3189, 3415 (fam. Halomonadaceae, Halomonas sp.) and 3088, 3468, 3469 (fam. Moraxellaceae, Psychrobacter sp.) belong to phylum Proteobacteria, to class Gammaproteobacteria. Gram-negative strains 3294 3392 (Rhizobiales, fam. Methylobacteriaceae, Methylobacterium sp.) relate to class Alphaproteobacteria of this phylum. Gram-positive strains 3179, 3275, 3470, 3471 (fam. Microbacteriaceae, Cryobacterium sp.), 3054, 3058, 3411 (fam. Corynebacteriaceae, Corynebacterium sp.) and 3194, 3398 (fam. Micrococcaceae, Micrococcus sp.) relate to phylum Actinobacteria, class Actinobacteria. Thus, the psychrophilic and psychrotolerant Antarctic bacteria (aerobic chemoorganotrophic) isolated from phytocenosis and soils of polar region are characterized by wide taxonomic variety.


Subject(s)
Actinomycetales/classification , Halomonadaceae/classification , Methylobacteriaceae/classification , Moraxellaceae/classification , Phylogeny , Soil Microbiology , Water Microbiology , Actinomycetales/growth & development , Actinomycetales/metabolism , Aerobiosis , Antarctic Regions , Cold Temperature , Culture Media , Fermentation , Halomonadaceae/growth & development , Halomonadaceae/metabolism , Methylobacteriaceae/growth & development , Methylobacteriaceae/metabolism , Moraxellaceae/growth & development , Moraxellaceae/metabolism
4.
Mikrobiol Z ; 74(5): 2-8, 2012.
Article in Russian | MEDLINE | ID: mdl-23120979

ABSTRACT

Five strains of the black yeast similar to Exophiala nigra (Nadsoniela nigra), which we have isolated from the Antarctic biotopes, are studied. At cultivation in a periodic operation the maximum level of absolutely dry biomass in five tested strains constituted 3.2-7.8 g/l of medium, melanin pigment yield being 6-9% of absolutely dry mass of cells. Two highly productive strains have been selected. Pigments of the studied black yeast are water-insoluble, however dissolve in alkali and concentrated acids. The maximum absorption of the yeast pigments was in the range of 220 nm. The above-stated properties of pigments of the investigated yeast correspond to the description of melanin fractions of Nadsoniela nigra and some microscopic mushrooms. The water-soluble melanin-pigments have been obtained after the dialysis of alkaline solution of the pigment. UV-spectra and visible absorption spectra of water solution of melanin-pigments are almost identical to those of initial alkaline solutions. It is shown that the studied yeast are resistant to high concentrations of toxic metals (Hg2+, Cu2+, Co2+, Cr(VI) and Ni2+), and introduction of Co2+ into the cultivation medium leads to the increase of pigments synthesis.


Subject(s)
Biological Products/metabolism , Exophiala/metabolism , Melanins/biosynthesis , Soil Microbiology , Antarctic Regions , Cations, Divalent , Chromium/pharmacology , Cobalt/pharmacology , Copper/pharmacology , Culture Media , Exophiala/drug effects , Exophiala/growth & development , Mercury/pharmacology , Nickel/pharmacology , Solubility , Solvents , Spectrophotometry
5.
Mikrobiol Z ; 74(2): 3-7, 2012.
Article in Russian | MEDLINE | ID: mdl-22686011

ABSTRACT

Resistance to toxic metals ( Hg2+, Cu2+, Ni2+, Co2+, Cr(VI)) of bacteria isolated from rock lichen samples of vertical cliffs located on the biogeographic polygon of Ukrainian Antarctic Station Akademik Vernadsky (island Galindez) is studied. Among the Antarctic rock microorganisms isolated on nonselective medium (without toxic metals), bacteria able to grow at toxic metal concentrations lethal for the majority of microorganisms (Hg2+, Cu2+, Ni2+, Co2+, Cr(VI)) are found out. The studied bacteria are most resistant to Cr(VI) possessing oxidative properties in concentration range 1.25-20.0 g/l depending on the strain. Maximal metal concentrations, at which the growth of bacteria was possible, was: Ni2+ to toxic metals - 2.0 g/l, Co(2+) - 0.1 g/l. In the presence of metal ions possessing both replacing and oxidative properties the strains grew in a concentration range: Hg(2+) - 0.005-0.05 g/l, Cu(2+) - 0.1-1.25 g/l. The highest toxic effect was shown for mercury ions. One of the isolated Antarctic strains which was superresistant to high toxic metal concentrations (g/l): Cr(VI) - 20.0, Ni(2+) - 2.0, Cu(2+) - 1.25, Co(2+) - 0.1, Hg(2+) - 0.05. Thus, for the Antarctic bacteria isolated from rock damaging or bactericidal toxic metal concentrations are by 2-3 orders higher than for the majority of microorganisms.


Subject(s)
Bacteria, Aerobic/drug effects , Metals, Heavy/toxicity , Antarctic Regions , Autotrophic Processes/physiology , Bacteria, Aerobic/physiology , Cold Temperature , Culture Media , Drug Resistance, Bacterial , Geography , Lichens/microbiology , Microbial Sensitivity Tests , Oxidation-Reduction
6.
Mikrobiol Z ; 74(1): 3-8, 2012.
Article in Russian | MEDLINE | ID: mdl-22545437

ABSTRACT

It is shown that the total number of chemoorganotrophic aerobic microorganisms in the Antarctic Region revealed at 1 degree C and 5 degrees C made from 10(4) up to 10(6) cells/g of plant-soil sample of biotopes: grass Deschampcia antarctica, grass Colobanthus, green mosses, crustose black lichens and a biofilm of accretion on vertical rocks. From 10(6) up to 10(8) cells/g of samples were revealed in the same Antarctic samples at 30 degrees C. At 42 degrees C thermotolerant bacteria were either absent, or their quantity was less than 10(4) cells/g of samples. Thus the fraction (part) of the Antarctic microorganisms, which grow at different temperatures, varied: at 1-5 degrees C their part made from 5 to 15%, and at 30 degrees C--from 10 to 45%. At 15-20 degrees C the growth of both psychrophilic/psychrotolerant, and mesophilic microorganisms was observed. When comparing the results of plating of samples from different climatic zones (the Antarctic Region and Ukraine), it is shown that in the Antarctic biotopes in comparison with biotopes of the zone with temperate climate: (1) the total number of microorganisms is lower, (2) quantity of psychrophilic/psychrotolerant bacteria is higher, (3) quantity of mesophilic microorganisms is less, (4) as a result the part psychrophilic/psychrotolerant microorganisms in the total number of microorganisms is much higher. It is evident, that low temperatures, and also daily cycles of freezing and thawing are factors which limit microbial colonization ofAntarctic biotopes.


Subject(s)
Bacteria, Aerobic/physiology , Microbial Consortia/physiology , Soil Microbiology , Adaptation, Biological , Antarctic Regions , Climate , Cold Temperature , Colony Count, Microbial , Ukraine
7.
Mikrobiol Z ; 73(2): 3-12, 2011.
Article in Russian | MEDLINE | ID: mdl-21598653

ABSTRACT

To determine a possibility of application of phylogenetic criteria for estimating the taxa rank, the intra- and interspecies, as well as intergeneric relatedness of methanotrophs on the basis of 16S rRNA gene sequences was estimated. We used sequences of 16S rRNA genes of the studied isolates of obligate methanotrophs which have been deposited in UCM (Ukrainian Collection of Microorganisms), and of type strains of other obligate methanotrophs species (from GenBank database). It is shown, that the levels of interspecies and intergeneric relatedness in different families of methanotrophs are not identical, and therefore they can be used for differentiation of taxa only within one family. The carried out analysis has shown, that it is necessary to reconsider taxonomic position: (1) of two phenotypically similar species of Methylomonas (M. aurantiaca and M. fodinarum), similarity of 16S rRNA genes which is 99.4%, similarity of their total DNA--up to 80% that rather testifies to strain differences, than to species differences; (2) of species Methylomicrobium agile and M album which are phylogenetically more related to genus Methylobacter (97% of affinity), than Methylomicrobium (94% of affinity); (3) of genera of the family Beijerinckiaceae (Methylocella and Methylocapsa), and also genera of the family Methylocystaceae (Methylosinus and Methylocystis), whereas high level of relatedness (97% and more) of these bacteria with other methanotrophic genera (within one family) practically corresponds to a range of relatedness of species (within some genera) in the family Methylococcaceae. When determining phylogenetic criteria which can characterize the ranks of taxa, it was revealed, that the levels of interspecies relatedness of methanotrophic genera of the families Methylocystaceae and Beijerinckiaceae (97.8-99.1% and 97.8%, accordingly) considerably exceed the level of genera formation in the family Methylococcaceae (94.0-98.2%) and, moreover, approach the value of intraspecies relatedness of the family Methylococcaceae (97.5-99.3%). Coefficients of intraspecies relatedness of methanotrophs of the families Methylocystaceae and Beijerinckiaceae are sometimes equal to interspecies relatedness. Hence, taxa of various rank can have the identical level of genes divergence. Thus, methanotrophic taxons of the families Methylocystaceae and Beijerinckiaceae have not demonstrated precise phylogenetic criteria which could correspond both to the species rank, or the genus rank. At the same time, the criteria, being adequate to the rank of certain taxa, are revealed in methanotrophs of the family Methylococcaceae. The level of genotypic relatedness of strains of the same species is in the range of 97.5-99.3%, species of the same genus--94-98%, the highest levels of relatedness between genera of this family are 90-96%.


Subject(s)
Methylococcaceae/classification , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Methylococcaceae/genetics , Phylogeny , Sequence Analysis, RNA , Species Specificity
8.
Mikrobiol Z ; 72(3): 8-13, 2010.
Article in Russian | MEDLINE | ID: mdl-20695223

ABSTRACT

Microbiological analysis of terrestrial biotopes of the Antarctic Region has shown, that vertical rocks of the Antarctic islands open for the Sun were characterized by special microcenoses. The wide distribution of pigmented microorganisms in the rock Antarctic samples, a higher frequency of their occurrence, the total number and biologic diversity, than in other Antarctic biotopes, has been demonstrated. For the first time the presence of bacteria and yeast, resistant to high doses of UV radiation on the vertical rocks in the Antarctic Region was shown. The lethal doze of UV radiation for the Antarctic pink pigmented Methylobacterium strains exceeded 200-300 J/m2, for coal-black yeast--500-800 J/m2, for red yeast--1200-1500 J/m2. The distinctions in lethal UV effect against strains of Methylobacterium isolated from the regions with different climate have not been found. Probably, adaptation of the rock microcenosis to extreme factors of the environment proceeds by natural selection of microorganisms, which resistance to this factor is genetically determined.


Subject(s)
Exophiala , Geologic Sediments/microbiology , Methylobacteriaceae , Radiation Tolerance , Ultraviolet Rays , Adaptation, Physiological , Altitude , Antarctic Regions , Exophiala/growth & development , Exophiala/radiation effects , Methylobacteriaceae/growth & development , Methylobacteriaceae/radiation effects
9.
Mikrobiol Z ; 72(2): 3-9, 2010.
Article in Russian | MEDLINE | ID: mdl-20455435

ABSTRACT

Microbiological analysis has been made of 120 samples from biotopes of the western coast of the Antarctic peninsula (Rasmussen cope, Tuxen cope, Waugh mountain), Argentine archipelago islands (Galindez, Skua, Corner, Barchans, Irizar, Uruguay, Cluls, Three Little Pigs, King-George), as well as neighbouring islands (Petermann--on the north, a group of Jalour islands--on the east, Berthelot--on the south-east); and more remote islands (Darboux, Lippmann, Booth). It was found out that the total number of chemoorganotrophic aerobic microorganisms was 10(6) - 10(8) cells/g of soil, that was by 2-3 orders lower than in the regions with temperate climate. One can observe a tendency of decreasing the quantity of chemoorganotrophic microorganisms in the Antartic biotopes (cells/g of a sample) in the following order: soil (1 x 10(7) - 8 x 10(8)), underground part of moss (1 x 10(6) - 5 x 10(7)), grass Deschampsia antarctica (10(6) - 10(8), slit of fresh-water reservoir (10(5) - 10(7)), ground part of moss (10(3) - 10(6)), lichens (10(3) - 10(6)). Representatives of several phylogenetic lines: Proteobacteria (genera Pseudomonas, Methylobacterium, Enterobacter), Firmicutes (genera Bacillus, Staphylococcus), Actinobacteria (genera Brevibacterium, Actinomyces, Streptomyces) have been found in the Antarctic samples. As a rule, genera of bacteria found in the Antarctic Region are widely distributed in different regions of the Earth with temperate climate. Microorganisms similar to the species Exophiala nigra (Issatsch.) Haats et de Hoog 1999, which was first detected 100 years ago by Academician B.L. Isachenko in the Arctic region water, were also isolated from biofilms on vertical rocks of the Galindez Island as well as from the soil of the Irizar Island.


Subject(s)
Bacteria/classification , Lichens/microbiology , Poaceae/microbiology , Soil Microbiology , Sphagnopsida/microbiology , Antarctic Regions , Bacteria/isolation & purification , Phylogeny
10.
Mikrobiol Z ; 72(1): 3-8, 2010.
Article in Russian | MEDLINE | ID: mdl-20364709

ABSTRACT

Now it is considered, that melanin is promising for application in medicine and pharmacology. Since black yeast were found in polar regions before, we have carried out screening of yeast-producers of melanin in the Antarctic biotopes. Dark pigmented microorganisms are revealed in 30% of samples from terrestrial biotopes at the western coast of the Antarctic peninsula, on islands of the Argentina archipelago (Galindez, Skua, Corner, Barchans, Irizar, Uruguay, Cruls, Three little pigs, King-George), and also on the neighbouring islands Petermann, Jalour, Berthelot, Darboux and Lippmann. In the Antarctic lichens the occurrence frequency of dark pigmented microorganisms, their total number and biodiversity are significantly higher, than in other Antarctic biotopes. Coal-black yeast are found on the crustose and bushy lichens on vertical rocks, they occur less often in soil, their quantity made 1 x 10(2) - 6 x 10(3)/g of a sample. Coal-black pigments were isolated from two Antarctic strains of yeast. These pigments are identical to melanin according to a complex of specific chemical tests, that is also confirmed by the character of UV-spectra (220-230 nm) and absorption spectra in the visible area (400-800 nm). The output of synthesized pigment/g in strain 36 made more than 10% of biomass amount. So, the yeast synthesizing intensively melanin are revealed in the Antarctic terrestrial biotopes.


Subject(s)
Ascomycota/isolation & purification , Exophiala/isolation & purification , Melanins/isolation & purification , Antarctic Regions , Ascomycota/growth & development , Ascomycota/metabolism , Biomass , Exophiala/growth & development , Exophiala/metabolism , Melanins/biosynthesis , Soil Microbiology , Spectrophotometry, Ultraviolet
11.
Mikrobiol Z ; 71(1): 3-7, 2009.
Article in Russian | MEDLINE | ID: mdl-19663320

ABSTRACT

Sequence-analysis of genes 16S rRNA has demonstrated the high-level relationship (99%) of the strains Methylobacter ucrainicus UCM B-3159, and Methylobacter marinus A45(T). The strain UCM B-3159 has lower coefficients of similarity (97.4-96.4%) for other species of that genus. These strains are similar as to their phenotypical properties and form one branch on the dendrogram which demonstrates species relations of Methylococcaceae family, that permitted reclassifying M. ucrainicus as M. marinus. Phylogenetic analysis has confirmed the belonging of strains UCM B-3002 and UCM B-3494 to Methylococcus capsulatus species. Those strains were earlier related to this species on the basis of phenotype features.


Subject(s)
Genes, Bacterial , Methylococcaceae/classification , Methylococcaceae/genetics , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, RNA , Species Specificity
12.
Mikrobiol Z ; 71(6): 3-9, 2009.
Article in Russian | MEDLINE | ID: mdl-20455426

ABSTRACT

Methylotrophs distribution has been studied in the terrestrial biotopes (moss, lichen, grass, soil, sludge of lakes) on the islands of Galindez, Barkhans, Irizar, Uruguay, Jalour, Petermann, Berthelot, Cruls, King George, Corner, Skua located in the Pacific sector of the Antarctic Region, as well as in analogous biotopes on the western shore of the Antarctic peninsula Basing on a complex of diagnosis features the isolated pink-pigmented strains, which facultatively use methanol and realize the serine cycle of assimilation of one-carbon compounds, are attributed to Methylobacterium genus. Methylobacterium strains occur more often in mosses, grass Deschampsia antarctica and lichens, than in the soil and lake sludge. Some regions ofAntarctica are comparable by the number of Methylobacterium cells with the same in the regions with moderate climate. An analysis of gene sequences 16S rRNA of the Antarctic methylobacteria with those of GenBank has shown a high extent of similarity with Methylobacterium extorquens (99.4-99.7%). Notwithstanding that the strains of Methylobacterium are resistant to the broad range of extreme factors (gamma-irradiation, UV-irradiation, dehydration), the Antarctic and collection strains of the genus were sensitive to the ions of such heavy metals as Cu, Hg, Cd, Cr (10 mg/l).


Subject(s)
Bryophyta/microbiology , Lichens/microbiology , Methylobacterium/isolation & purification , Poaceae/microbiology , Soil Microbiology , Adaptation, Biological , Antarctic Regions , Fresh Water/microbiology , Methylobacterium/genetics , Methylobacterium/growth & development , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics
13.
Mikrobiol Z ; 68(1): 3-10, 2006.
Article in Russian | MEDLINE | ID: mdl-16686213

ABSTRACT

The authors have performed sequence-analysis of 16S rRNA genes of thermophylic methane-oxidizing bacteria UCM B-3026, UCM B-3032, UCM B-3109, UCM B-3014 which were isolated from sludge pond of different regions in Ukraine and deposited at Ukrainian Collection of Microorganisms (UCM) as Methylococcus thermophilus and "M. gracilis". A comparative analysis of 16S rRNA gene sequences of the studied bacteria with those sequences of various strains of bacteria in the GenBank databases has shown that the level of similarity of the strains UCM B-3026, UCM B-3032, UCM B-3109 with Methylocaldum szegediense was 98.0-98.7%, strain UCM B-3014 with Methylocaldum gracile--99.1%, that allows to relate them to these species. As to other species of the genus Methylocaldum, these strains had a lower level of similarity (94.8-97.2 %) and with Methylococcus thermophilus ACM 3585T (= IMV-B-3037T = UCM B-3037T)--less than 90%. Thus, the strains UCM B-3026, UCM B-3032, UCM-3109 were reclassified as Methylocaldum szegediense, strain UCM B-3014--as Methylocaldum gracile. When constructing phylogenetic tree based on the comparison of 16S rRNA genes with the use of various algorithms realized in the packages of programs Tree View (version 1.5.2) and ClastalX (version 1.81) certain clusters have formed genera Methylocaldum, Methylococcus and Methylomonas. Genera Methylobacter and Methylomicrobium have formed three clusters, one of the clusters contained two species of Methylobacter and two species of Methylomicrobium. Apparently, the taxonomy of genera Methylobacter and Methylomicrobium is to be specified.


Subject(s)
Genes, Bacterial , Methanobacteriaceae/classification , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Methanobacteriaceae/genetics , Phylogeny , Sequence Analysis, RNA , Species Specificity
14.
Mikrobiologiia ; 75(6): 792-7, 2006.
Article in Russian | MEDLINE | ID: mdl-17205804

ABSTRACT

Strain Methylomonas rubra 15sh(T), deposited in several collections of microorganisms (NCIMB 11913(T) = UCM B-3075(T) = ACM 3303(T)), is the subject of numerous studies. However, the name of this strain is not valid, primarily due to the phenotypic similarity of the species M. rubra to the species M. methanica. The results of the present study and data available in the literature indicate that M. rubra deserves the status of a separate species. Strains of M. rubra differ from strains of M. methanica in a number of properties, such as the ability to reduce nitrates to nitrites, the structure of intracytoplasmic membranes, and the presence of a new coenzyme Q. The distinctions between the species M. rubra and M. methanica were confirmed by comparison of electrophoretic patterns of their cellular proteins, by results of DNA-DNA hybridization, and by the data from 16S rRNA gene sequencing (the level of phylogenetic homology between these two species was below 95%). Phylogenetic and phenotypic analyses showed that strains of M. rubra cannot be assigned to any species of the genus Methylomonas. Results of polyphasic analysis suggest an independent taxonomic status of strain Methylomonas rubra 15sh(T). This paper contains description of Methylomonas rubra sp. nov. with the type strain 15sh(T) = NCIMB 11913T = UCM B-3075(T) = ACM 3303(T). The nucleotide sequence of the 16S rRNA gene of strain 15sh(T) has been deposited with the GenBank database under the accession number AY995198.


Subject(s)
Methylomonas/classification , Methylomonas/physiology , Nitrates/metabolism , Nitrites/metabolism , Phylogeny , Polymerase Chain Reaction , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Sequence Analysis , Sequence Homology, Nucleic Acid , Species Specificity , Ubiquinone/isolation & purification
15.
Mikrobiol Z ; 68(6): 3-10, 2006.
Article in Russian | MEDLINE | ID: mdl-17243361

ABSTRACT

High extracellular concentration of K+ stimulated methane oxygenation with Methylomonas rubra 15 [Russian character: see text], Methylococcus thermophilus 111 [Russian character: see text] and Methylococcus capsulatus 494 at neutral value of pH. That was determined by K+ arrival to the cells at neutral medium pH that resulted in the increase of pH difference between the exterior and interior sides of the membrane (ApH) and, respectively, in the increase of the methane oxygenation rate. Thus, methane monooxygenation depends on the availability of ion gradients on a membrane. Ionophores valinomycin and monensin inhibited methane oxygenation by the cells of Methylomonas rubra 15 [Russian character: see text] that evidenced for the methane oxygenation dependence on the protone-motive force which could be formed as the result both of protons displacement with oxygenation of methane monooxygenation products and of the gradient of potassium and sodium ions. Protonophore FCCP suppressed completely methane oxygenation in Methylococcus capsulatus 494 and M. thermophilus 111 [Russian character: see text] at neutral pH, and took no effect at the alkaline values of pH. This suggests that FCCP dissipates the proton-motive force and does not inhibit methane monooxygenase activity. The results obtained indicate that the process of methane oxygenation should be combined with energy generation in a form of the transmembrane electric charge (delta psi) and proton gradient (deltapH).


Subject(s)
Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone/pharmacology , Ionophores/pharmacology , Methane/chemistry , Methylococcus/growth & development , Methylomonas/growth & development , Proton-Motive Force/drug effects , Hydrogen-Ion Concentration , Membrane Potentials/drug effects , Oxidation-Reduction , Potassium/pharmacology
16.
Mikrobiol Z ; 67(3): 3-8, 2005.
Article in Russian | MEDLINE | ID: mdl-16018200

ABSTRACT

Psychrotolerant bacteria which use obligately methane were found in the moss samples and in soil-vegetation samples in the island part of the Antarctica during the VII expedition (2003) at the station "Akademik Vernadsky". The number of methane-oxidizing bacteria in the samples from the Antarctica (101- 10(3)/g of the sample) was lower than in the samples from the regions with moderate climate (10(2)- 106/g of the sample). Psychrotolerant strains of Methylobacteriium genus which use facultatively methanol were found in the bottom sediments of the fresh-water and Krasnoye lakes, as well as in the soil-plant samples. The psychrophilic strain which is probably a new species of the genus Methylobacterium has been isolated from one soil-plant sample from the Antarctica at 10 degrees C. It is established that most collection mesophilic strains of Methylobacterium, which have been isolated from the soil and plant phyllosphere in Ukraine, also could grow at 10 degrees C.


Subject(s)
Bryopsida/microbiology , Fresh Water/microbiology , Methylobacterium/growth & development , Methylobacterium/metabolism , Soil Microbiology , Adaptation, Biological , Antarctic Regions , Methane/metabolism , Methanol/metabolism , Temperature , Ukraine
17.
Mikrobiol Z ; 67(5): 3-10, 2005.
Article in Russian | MEDLINE | ID: mdl-16396106

ABSTRACT

Species status of the already described methylotrophic bacteria has been specified, and new isolates have been identified. The bacteria under study are classified as those from Methylobacterium genus on the basis of a set of diagnostic characteristics (they are capable to assimilate, besides methanol, other organic substances; to realize serine cycle of one-carbon compounds assimilation, to form rast-coloured colonies; they can form rosy-coloured colonies). As a result of the study of phenotypical characteristics in 14 strains of Methylobacterium and sequence-analysis of the gene 16S pRNA two strains: T-2 (=UKM B-3357) and strain ch-8 (=UKM B-3352) are identified as M. mesophilicum, strain A-5 (=UKM B-3381)--as M. extorquens; several strains were reclassified. The strain 9-17 (=UKM B-3339) is related to the species M. zatmanii (described before as M. organophilum), strain 13-17 (=UKM B-3342)--to the species M. fujisawaense (formerly--M. organophilum), K-2 (=UKM B-3351)--to the species M. fujisawaense (formerly--M. extorquens). Phenotypical characteristics differentiating the studied species of Methylobacterium are suggested. Identification of the strains of Methylobacterium genus based on sequence analysis of genes 16S pRNA is in agreement with the results obtained when studying phenotypical properties.


Subject(s)
Methylobacterium/classification , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Bacterial Typing Techniques , DNA, Bacterial/genetics , Methylobacterium/genetics , Molecular Sequence Data , Oligonucleotide Array Sequence Analysis , Polymerase Chain Reaction , Sequence Homology
18.
Mikrobiol Z ; 66(5): 3-12, 2004.
Article in Russian | MEDLINE | ID: mdl-15554292

ABSTRACT

Phylogenetic analysis of Methylobacterium genus species using analysis of nucleotide sequence of 16S rRNA genes has shown that Methylobacterium zatmanii and M. rhodesianum possess high-level similarity with M. extorquens (99.4-98.8%), and M. fujisawaense and M. radiotolerans--with M. mesophilicum (98.9-97.8%). These species are also similar as to their phenotypical properties and their total DNAs have also close similarity. Thus, the right of M. zatmanii, M. rhodesianum, M. fujisawaense and M. radiotolerans species for existence needs confirmation. Some phenotypical properties which were assummed as a basis for formation of certain species of the genus Methylobacterium (radioresistance, e.g.) cannot serve as the differentiating characteristic of this genus species. High resistance to gamma- and UV-radiation is a specific sign of representatives of Methylobacterium genus.


Subject(s)
Methylobacterium/genetics , Phylogeny , Base Sequence , DNA, Bacterial/genetics , Methylobacterium/chemistry , RNA, Ribosomal, 16S/analysis , RNA, Ribosomal, 16S/genetics
20.
Mikrobiol Z ; 65(1-2): 122-32, 2003.
Article in Russian | MEDLINE | ID: mdl-12774504

ABSTRACT

The basic trends of the department scientific activity are presented. The priority results of investigations of methaneoxidizing bacteria biology are given. The biothechnological development of the department (obtaining of products of microbial synthesis: protein, polysaccharides, antialcoholic and antinarcotic preparations) are considered in detail. Possible areas of their application are presented.


Subject(s)
Academies and Institutes/history , Bacteria/metabolism , Microbiology/history , History, 20th Century , Methane/history , Methane/metabolism , USSR , Ukraine
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