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1.
Cancer Epidemiol Biomarkers Prev ; 9(10): 1071-8, 2000 Oct.
Article in English | MEDLINE | ID: mdl-11045790

ABSTRACT

Retinoids have shown a potential activity in preventing tumor recurrence in superficial bladder cancer. We assessed the activity of the synthetic retinoid fenretinide in superficial bladder cancer using DNA flow cytometry and conventional cytology as surrogate biomarkers. A total of 99 subjects with resected superficial bladder cancer (pTa, pT1) were randomized to either fenretinide (200 mg day p.o. for 24 months) or no intervention. Cystoscopy and bladder washing for DNA flow cytometry end points (proportion of DNA aneuploid histograms, hyperdiploid fraction, and percentage of apoptotic cells) and proportion of abnormal cytological examinations were repeated every 4 months for up to 36 months. The primary study end point was the proportion of DNA aneuploid histograms after 12 months. This figure was 48.9% in the fenretinide arm and 41.9% in the control arm (odds ratio, 1.16; 95% confidence interval, 0.44-3.07). There was no difference in any other response biomarker between the two groups up to 36 months, nor was any biomarker able to predict recurrence risk. Recurrence-free survival was comparable between the arms (27 events in the fenretinide arm versus 21 in the control arm; P = 0.36). Twelve subjects in the fenretinide arm complained of diminished dark adaptability, and nine subjects in the fenretinide arm versus one control subject had mild dermatological alterations. We conclude that fenretinide showed a lack of effect on the DNA content distribution and the morphology of urothelial cells obtained in serial bladder washings. Recurrence-free survival was comparable between groups. Because our data are hampered by the lack of predictivity of the selected biomarkers, additional studies are necessary to assess the activity of fenretinide in preventing bladder cancer.


Subject(s)
Antineoplastic Agents/therapeutic use , Biomarkers, Tumor/analysis , DNA, Neoplasm/genetics , Fenretinide/therapeutic use , Urinary Bladder Neoplasms/drug therapy , Urinary Bladder Neoplasms/genetics , Aged , Antineoplastic Agents/adverse effects , DNA, Neoplasm/analysis , Disease-Free Survival , Female , Fenretinide/adverse effects , Flow Cytometry , Humans , Male , Middle Aged , Neoplasm Recurrence, Local , Treatment Outcome , Urinary Bladder/pathology
2.
Nucleic Acids Res ; 26(1): 145-7, 1998 Jan 01.
Article in English | MEDLINE | ID: mdl-9399819

ABSTRACT

In this paper, the current status of the Molecular Probe Data Base (http://www.biotech.ist.unige.it/interlab/ mpdb.html ) is briefly presented together with a short analysis of its activity during 1997. This has been performed by statistically evaluating the 'logs' of the Internet servers that are used for its distribution with reference to the geographical origin of the requests, the words that were utilized to carry out of the searches and the oligonucleotides that were retrieved. Planned enhancements of this database are also described. They include a revision of its data structure and, even more relevant, of its data management procedures.


Subject(s)
Databases, Factual , Molecular Probes/genetics , Computer Communication Networks , Information Storage and Retrieval
3.
Nucleic Acids Res ; 25(1): 92-5, 1997 Jan 01.
Article in English | MEDLINE | ID: mdl-9016509

ABSTRACT

Molecular Probe Data Base contains detailed information on synthetic oligonucleotides with a sequence of up to 100 nucleotides. This database prevalently contains information related to human oligonucleotides used in diagnostics. Molecular Probe Data Base has been made available on-line through the Internet by means of Network Information Retrieval (NIR) tools since 1993. Two years ago, a collaboration with EMBL Data Library was also set up, so that the Molecular Probe Data Base has been integrated with other molecular biology data banks in the sphere of the SRS WWW network browser. In this paper, the most recent enhancements and the current status of the Molecular Probe Data Base are briefly presented.


Subject(s)
Databases, Factual , Molecular Probes , Base Sequence , Computer Communication Networks , Humans , Molecular Sequence Data
4.
Eur J Cancer ; 33(1): 80-4, 1997 Jan.
Article in English | MEDLINE | ID: mdl-9071904

ABSTRACT

The long-term effects of the synthetic retinoid fenretinide (4-HPR) on retinal function were studied by electroretinogram (ERG) in 24 women treated for a median of 30.5 months and in 18 untreated controls belonging to a phase III intervention trial. The six outcome measures were: a wave implicit time, peak-to-peak amplitude and implicit time of b wave following both cone stimulation and maximal cone-rod stimulation in the dark-adapted eye. Multivariate analysis of covariance was applied to evaluate the joint effect on the whole set of ERG measures taking into account their inter-relationship. Predictive factors with a significant effect on ERG measures were: (1) a qualitative interaction between age and treatment duration and (2) the squared (parabolic) function of plasma retinol. Individually, the b wave implicit time following cone stimulation was the only ERG measure significantly influenced by the predictors, indicating a primary effect of 4-HPR on retinal photoreceptor sensitivity without significant alterations of the inner nuclear layer. Thus, in contrast to previous reports at higher dose, administration of 4-HPR at 200 mg/day seems to exert subtle alterations of retinal function as measured by ERG.


Subject(s)
Antineoplastic Agents/pharmacology , Breast Neoplasms/prevention & control , Fenretinide/pharmacology , Retina/drug effects , Age Factors , Antineoplastic Agents/therapeutic use , Cohort Studies , Drug Administration Schedule , Electroretinography/drug effects , Female , Fenretinide/therapeutic use , Humans , Middle Aged , Photoreceptor Cells/drug effects , Photoreceptor Cells/physiopathology , Retina/physiopathology , Vitamin A/blood
5.
Nucleic Acids Res ; 24(1): 64-7, 1996 Jan 01.
Article in English | MEDLINE | ID: mdl-8594603

ABSTRACT

The molecular probe data base (MPDB) contains detailed information on synthetic oligonucleotides, including their identification, target genes, applications and bibliographic references. It is available on-line through Internet and can be searched by using Network Information Retrieval tools. In this article the most recent enhancements of MPDB, both in terms of data contents and new ways of access, are described. These include a recently established collaboration with EMBL Data Library, in the sphere of SRSWWW network browser, in view of a better integration of MPDB with other molecular biology databases.


Subject(s)
Databases, Factual , Molecular Probes , Computer Communication Networks , Humans , Information Storage and Retrieval
6.
Cancer Epidemiol Biomarkers Prev ; 3(6): 507-10, 1994 Sep.
Article in English | MEDLINE | ID: mdl-8000302

ABSTRACT

Administration of the synthetic retinoid Fenretinide lowers circulating retinol and may thus affect night vision. We have recently shown that plasma retinol levels below 100 ng/ml are associated with moderate alterations of the dark adaptometry test. To identify which patients are more likely to experience a decrease of plasma retinol under this threshold, we measured plasma levels of retinol, Fenretinide, and its metabolite 4-MPR in a cohort of 28 women receiving Fenretinide at the daily dose of 200 mg and studied their relationship with clinical characteristics such as age, menstrual status, body mass index, and time on treatment. Our results show that patients aged over 55 years with a higher percentage of adipose tissue had higher plasma concentrations of 4-MPR, which turned out to be the major determinant of the retinol decrease. This subgroup may thus deserve careful ophthalmological surveillance.


Subject(s)
Breast Neoplasms/drug therapy , Fenretinide/therapeutic use , Vitamin A/blood , Adipose Tissue/anatomy & histology , Adult , Age Factors , Aged , Body Mass Index , Breast Neoplasms/blood , Cohort Studies , Dark Adaptation/drug effects , Female , Fenretinide/administration & dosage , Fenretinide/blood , Humans , Middle Aged , Population Surveillance , Postmenopause , Premenopause , Time Factors , Tretinoin/analogs & derivatives , Tretinoin/blood , Vision, Ocular/drug effects
7.
Nucleic Acids Res ; 22(17): 3474-80, 1994 Sep.
Article in English | MEDLINE | ID: mdl-7937049

ABSTRACT

This paper provides an update on the contents and structure, forms and mode of data distribution of the Molecular Probe Data Base (MPDB), a database that collects and provides on-line information on the sequence, target gene, applications and bibliographic references of synthetic oligonucleotides. The recent data extension and the new means of accessing the database are discussed.


Subject(s)
Databases, Factual , Molecular Probes , Oligonucleotide Probes , Base Sequence , Genes, Viral , Genome, Human , Humans , Molecular Sequence Data , Viruses/genetics
8.
J Natl Cancer Inst ; 86(2): 105-10, 1994 Jan 19.
Article in English | MEDLINE | ID: mdl-8271292

ABSTRACT

BACKGROUND: Fenretinide, a synthetic derivative of retinoic acid, is under study in clinical trials for the prevention of breast, skin basal cell, bladder, and oral cancer in patients at risk. Although fenretinide is well tolerated even after prolonged use, it does lower plasma retinol levels and thus may affect night vision. PURPOSE: The purpose of this study was to measure changes in dark adaptation resulting from fenretinide administration, to compare the measured results with the patient's subjective perception, to define the association with plasma retinol levels, to assess the reversibility of alterations in night vision, and to assess the effects of fenretinide on the surface of the eye. METHODS: The study involved 65 women who had been operated on for stage I breast cancer. Of the study group, 34 received 200 mg daily of fenretinide for a median of 32 months, while 31 control subjects did not. Dark adaptation was studied with the Goldmann-Weekers adaptometer and with a subjective questionnaire. Plasma retinol levels were measured at each test of dark adaptation. Effects of fenretinide on the ocular surface were evaluated through conjunctival impression cytology. RESULTS: Of the patients on fenretinide, eight (23.5%) showed mild and nine (26.5%) showed moderate alterations of measured dark adaptability, compared with just two controls (6.5%) with mild alterations (cumulative odds ratio = 15.4; P = .0008). A significant inverse correlation exists between the final sensitivity threshold of dark-adaptometry and plasma retinol levels, with mild alterations arising below 16 micrograms/dL and moderate alterations below 10 micrograms/dL. Abnormal rod function improved significantly after 7 days and normalized 1 month after use of fenretinide was stopped or vitamin A supplementation was begun, while the conventional 3-day drug suspension, or drug half dose, did not allow sufficient recovery. Alterations of conjunctival cytology were slightly higher in patients receiving fenretinide, but no clinical disorders of the ocular surface were observed. CONCLUSIONS: The women treated with 200 mg fenretinide daily showed a relatively high incidence of mild-to-moderate alterations of dark-adaptometry as measured with the Goldmann-Weekers adaptometer. However, the real-life implication of the measurements is an open question, for the questionnaire shows that 50% of the patients with altered dark adaptometry were asymptomatic.


Subject(s)
Dark Adaptation/drug effects , Eye/drug effects , Fenretinide/pharmacology , Breast Neoplasms/drug therapy , Conjunctiva/drug effects , Conjunctiva/pathology , Female , Fenretinide/metabolism , Humans , Vitamin A/blood
9.
Nucleic Acids Res ; 21(13): 3007-9, 1993 Jul 01.
Article in English | MEDLINE | ID: mdl-8332523

ABSTRACT

The Molecular Probe Data Base (MPDB) was designed to collect and make information on synthetic oligonucleotides available on-line. This paper briefly describes its purpose, contents and structure, forms and mode of data distribution. Particular emphasis is given to recent data extension and system enhancements that have been carried out in order to simplify access to MPDB for unskilled users.


Subject(s)
DNA Probes , Databases, Factual , Oligonucleotide Probes , Base Sequence , Information Storage and Retrieval , Molecular Sequence Data
10.
Cytotechnology ; 11 Suppl 1: S130-3, 1993.
Article in English | MEDLINE | ID: mdl-7763741

ABSTRACT

The Cell Line Data Base (CLDB), set up within the Interlab Project, is a relational database containing data on 2650 human and animal cell lines which are available in labs and cell banks all over Europe. The second edition of the catalogue, directly generated from the database, has been produced, and will be published in the first months of 1993. Furthermore, the electronic catalogue is available for IBM-compatible personal computers and the version for MacIntosh is under preparation.


Subject(s)
Cell Line , Databases, Factual , Animals , Biotechnology , Catalogs as Topic , Europe , Humans
11.
Cytotechnology ; 11(Suppl 1): S130-3, 1993 Jan.
Article in English | MEDLINE | ID: mdl-22358677

ABSTRACT

The Cell Line Data Base (CLDB), set up within the Interlab Project, is a relational database containing data on 2650 Human and animal cell lines which are available in labs and cell banks all over Europe. The second edition of the catalogue, directly generated from the database, has been produced, and will be published in the first months of 1993. Furthermore, the electronic catalogue is available for IBM-compatible personal computers and the version for MacIntosh is under preparation.

12.
13.
Nucleic Acids Res ; 20 Suppl: 2009-11, 1992 May 11.
Article in English | MEDLINE | ID: mdl-1598231

ABSTRACT

The Molecular Probe Data Base (MPDB) is designed to collect and make available on-line information on synthetic oligonucleotides. This paper briefly describes the purpose of MPDB, its content and structure, forms and mode of data distribution, and a series of additional services available to scientists using MPDB.


Subject(s)
Databases, Factual , Oligonucleotide Probes , Amino Acid Sequence , Animals , Base Sequence , Cell Line , Humans , Major Histocompatibility Complex/genetics , Molecular Sequence Data , Online Systems
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