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1.
Schweiz Arch Tierheilkd ; 161(3): 165-169, 2019 Mar.
Article in German | MEDLINE | ID: mdl-30843523

ABSTRACT

INTRODUCTION: A case of a histiocytic sarcoma at the aortic valve with multiple metastases in the ventricular myocardium, ventricular endocardium and mitral valves in a male crossbreed dog is described. Neoplasia resulted in intermittent forward heart failure, thrombosis, myocardial infarction, and ventricular tachycardia.


INTRODUCTION: On décrit le cas, chez un chien croisé, d'un sarcome histiocytaire de la valvule aortique avec de multiples métastases dans le myocarde ventriculaire, l'endocarde ventriculaire et la valvule mitrale. Le néoplasie conduisait à une faiblesse, à des thromboses et des infarctus du myocarde ainsi qu'à une tachycardie ventriculaire.


Subject(s)
Dog Diseases/pathology , Heart Failure/etiology , Heart Neoplasms/veterinary , Heart Ventricles/pathology , Histiocytic Sarcoma/veterinary , Animals , Aortic Valve/pathology , Dog Diseases/diagnostic imaging , Dogs , Heart Neoplasms/complications , Heart Neoplasms/diagnostic imaging , Heart Neoplasms/pathology , Histiocytic Sarcoma/complications , Histiocytic Sarcoma/diagnostic imaging , Histiocytic Sarcoma/pathology , Male , Neoplasm Metastasis
2.
Cancer Radiother ; 16(5-6): 470-2, 2012 Sep.
Article in French | MEDLINE | ID: mdl-22921984

ABSTRACT

Hypofractionated and accelerated partial breast irradiation are more and more widely used for early breast cancer. Here, this short communication would expose the role of hypofractionated radiotherapy in adjuvant breast radiotherapy, rational, techniques and indications of accelerated partial breast irradiation.


Subject(s)
Breast Neoplasms/radiotherapy , Dose Fractionation, Radiation , Breast Neoplasms/diagnosis , Early Detection of Cancer , Female , Humans , Patient Selection , Radiotherapy, Adjuvant , Radiotherapy, Conformal
3.
Cancer Radiother ; 16(7): 641-9, 2012 Oct.
Article in French | MEDLINE | ID: mdl-22727723

ABSTRACT

Breast conserving treatment (breast conserving surgery followed by whole breast irradiation) has commonly been used in early breast cancer since many years. New radiation modalities have been recently developed in early breast cancers, particularly accelerated partial breast irradiation. Three-dimensional conformal accelerated partial breast irradiation is the most commonly used modality of radiotherapy. Other techniques are currently being developed, such as intensity-modulated radiotherapy, arctherapy, and tomotherapy. The present article reviews the indications, treatment modalities and side effects of accelerated partial breast irradiation.


Subject(s)
Breast Neoplasms/radiotherapy , Radiotherapy, Conformal/methods , Breast Neoplasms/surgery , Clinical Trials as Topic , Combined Modality Therapy , Dose Fractionation, Radiation , Female , Humans , Mastectomy, Segmental , Patient Selection , Radiation Tolerance , Radiometry , Radiotherapy Dosage , Radiotherapy, Intensity-Modulated/methods , Relative Biological Effectiveness , Treatment Outcome , Tumor Burden
4.
Cancer Radiother ; 16(2): 152-63, 2012 Apr.
Article in French | MEDLINE | ID: mdl-22424889

ABSTRACT

The implementation of new techniques of imaging in the daily practice of the radiation oncologist is a major advance in these last 10 years. This allows optimizing the therapeutic intervals and locoregional control of the disease while limiting side effects. Among them, positron emission tomography (PET) offers an opportunity to the clinician to obtain data relative to the tumoral biological mechanisms, while benefiting from the morphological images of the computed tomography (CT) scan. Recently hybrid PET/CT has been developed and numerous studies aimed at optimizing its use in the planning, the evaluation of the treatment response and the prognostic value. The choice of the radiotracer (according to the type of cancer and to the studied biological mechanism) and the various methods of tumoral delineation, require a regular update to optimize the practices. We propose throughout this article, an exhaustive review of the published researches (and in process of publication) until December 2011, as user guide of PET/CT in all the aspects of the modern radiotherapy (from the diagnosis to the follow-up): biopsy guiding, optimization of treatment planning and dosimetry, evaluation of tumor response and prognostic value, follow-up and early detection of recurrence versus tumoral necrosis. In a didactic purpose, each of these aspects is approached by primary tumoral location, and illustrated with representative iconographic examples. The current contribution of PET/CT and its perspectives of development are described to offer to the radiation oncologist a clear and up to date reading in this expanding domain.


Subject(s)
Multimodal Imaging , Neoplasms/diagnostic imaging , Neoplasms/radiotherapy , Positron-Emission Tomography , Tomography, X-Ray Computed , Female , Gastrointestinal Neoplasms/diagnostic imaging , Gastrointestinal Neoplasms/radiotherapy , Genital Neoplasms, Female/diagnostic imaging , Genital Neoplasms, Female/radiotherapy , Humans , Lung Neoplasms/diagnostic imaging , Lung Neoplasms/radiotherapy , Lymphoma/diagnostic imaging , Lymphoma/radiotherapy , Male , Prostatic Neoplasms/diagnostic imaging , Prostatic Neoplasms/radiotherapy
5.
J Med Genet ; 46(4): 281-6, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19357118

ABSTRACT

BACKGROUND: Primary ciliary dyskinesia (PCD) is characterised by recurrent infections of the upper respiratory airways (nose, bronchi, and frontal sinuses) and randomisation of left-right body asymmetry. To date, PCD is mainly described with autosomal recessive inheritance and mutations have been found in five genes: the dynein arm protein subunits DNAI1, DNAH5 and DNAH11, the kinase TXNDC3, and the X-linked retinitis pigmentosa GTPase regulator RPGR. METHODS: We screened 89 unrelated individuals with PCD for mutations in the coding and splice site regions of the gene DNAH5 by denaturing high performance liquid chromatography (DHPLC) and sequencing. Patients were mainly of European origin and were recruited without any phenotypic preselection. RESULTS: We identified 18 novel (nonsense, splicing, small deletion and missense) and six previously described mutations. Interestingly, these DNAH5 mutations were mainly associated with outer + inner dyneins arm ultrastructural defects (50%). CONCLUSION: Overall, mutations on both alleles of DNAH5 were identified in 15% of our clinically heterogeneous cohort of patients. Although genetic alterations remain to be identified in most patients, DNAH5 is to date the main PCD gene.


Subject(s)
Kartagener Syndrome/genetics , Mutation , Alternative Splicing , Axonemal Dyneins , Chromatography, High Pressure Liquid/methods , Codon, Nonsense , Cohort Studies , DNA Mutational Analysis , Dyneins , Female , Gene Frequency , Genetic Predisposition to Disease , Genotype , Humans , Kartagener Syndrome/pathology , Male , Mutation, Missense , Patient Selection , Phenotype , Polymorphism, Single Nucleotide , Sequence Deletion
6.
Curr Med Res Opin ; 24(4): 1199-208, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18348746

ABSTRACT

OBJECTIVES: To assess bioequivalence of recombinant human follicle stimulating hormone (r-hFSH, follitropin alfa) and recombinant human luteinising hormone (r-hLH, lutropin alfa) in a fixed 2:1 combination (Pergoveris) compared with injection of each of the hormones separately. RESEARCH DESIGN AND METHODS: Two, two-way crossover, phase I studies in healthy female volunteers after gonadotrophin-releasing hormone agonist down-regulation. Volunteers were randomised to the order in which they received subcutaneous injections. In the r-hFSH study, volunteers received one injection of r-hFSH (300 IU) and one of r-hFSH (300 IU)/r-hLH (150 IU) > or = 7 days apart; in the r-hLH study they received r-hLH (450 IU) and r-hFSH (900 IU)/r-hLH (450 IU) > 21 days apart. MAIN OUTCOME MEASURES: The serum concentration-time profiles of FSH in the r-hFSH study and LH in the r-hLH study from zero to the last measurable concentration (AUC(0-last)) and the peak FSH/LH serum concentrations (C(max)) were assessed by non-compartmental analysis. The pre-defined range for bioequivalence was 0.8-1.25 for 90% confidence intervals (CI) of the ratio (fixed combination/single gonadotrophin) of the mean for each pharmacokinetic parameter. RESULTS: Bioequivalence criteria were met for the r-hFSH study (n = 34) for C(max) (ratio of means 1.0024, 90% confidence interval (CI) 0.9611-1.0454) and AUC(0-last) (ratio of means 1.0167, 90% CI 0.9933-1.0407), and for the r-hLH study (n = 63) for C(max) (ratio of means 0.9687, 90% CI 0.9194-1.0207) and AUC(0-last) (ratio of means 0.9753, 90% CI 0.8990-1.0581). In the r-hFSH study, 20 adverse events (AEs) were reported after injection of r-hFSH and 20 after r-hLH/r-hFSH. In the r-hLH study, 179 AEs were reported after injection of r-hLH and 193 after the fixed-dose combination. Across both studies, headache was the most commonly reported AE. No serious AEs occurred. CONCLUSIONS: These studies demonstrated bioequivalence between r-hFSH and r-hLH administered alone or in fixed 2:1 combination. The 2:1 combination of follitropin alfa and lutropin alfa allows administration of both recombinant gonadotrophins in a single injection.


Subject(s)
Follicle Stimulating Hormone, Human/pharmacokinetics , Luteinizing Hormone/pharmacokinetics , Recombinant Proteins/pharmacokinetics , Adolescent , Adult , Area Under Curve , Cross-Over Studies , Double-Blind Method , Drug Therapy, Combination , Female , Follicle Stimulating Hormone, Human/administration & dosage , Follicle Stimulating Hormone, Human/therapeutic use , Humans , Injections, Subcutaneous , Luteinizing Hormone/administration & dosage , Luteinizing Hormone/therapeutic use , Therapeutic Equivalency
7.
Arthritis Rheum ; 58(1): 61-72, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18163485

ABSTRACT

OBJECTIVE: Atacicept is a recombinant fusion protein that binds and neutralizes B lymphocyte stimulator and a proliferation-inducing ligand. The purpose of this study was to investigate the tolerability, pharmacokinetics, and pharmacodynamics of atacicept treatment in patients with rheumatoid arthritis (RA) and to collect exploratory data on clinical outcomes. METHODS: In this multicenter, phase Ib, randomized, placebo-controlled, dose-escalating trial, 73 patients were enrolled into 6 escalating-dose cohorts. Patients received atacicept or placebo as single doses (70, 210, or 630 mg) or as repeated doses given at 2-week intervals (3 doses of 70 mg, 3 doses of 210 mg, or 7 doses of 420 mg), followed by 10 weeks of trial assessments, with a followup assessment at 3 months after the final dose. RESULTS: Atacicept was well tolerated, with few differences between treatment groups and no obvious safety concerns. The pharmacokinetics profile was nonlinear, but was consistent and predictable across all doses and regimens. Treatment-related decreases in immunoglobulin (particularly IgM) and rheumatoid factor levels were evident, and a clear decrease in anti-citrullinated protein antibodies was observed in the cohort that received 7 doses of 420 mg. The B cell response was biphasic, with an initial transient increase (dominated by memory B cells) followed by a dose-related decrease (dominated by mature B cells). Clinical assessments showed trends toward improvement with the 3-month treatment. Little effect on the erythrocyte sedimentation rate or C-reactive protein levels was seen. CONCLUSION: Atacicept was well tolerated both systemically and locally. The results demonstrated that the biologic activity of atacicept was consistent with its mechanism of action.


Subject(s)
Antirheumatic Agents/administration & dosage , Arthritis, Rheumatoid/drug therapy , Recombinant Fusion Proteins/administration & dosage , Antirheumatic Agents/adverse effects , Antirheumatic Agents/pharmacokinetics , Arthritis, Rheumatoid/immunology , Arthritis, Rheumatoid/pathology , B-Lymphocytes/immunology , Biomarkers/blood , Cartilage/pathology , Dose-Response Relationship, Drug , Double-Blind Method , Female , Flow Cytometry , Humans , Immunoglobulin A/blood , Immunoglobulin G/blood , Immunoglobulin M/blood , Male , Middle Aged , Placebos , Recombinant Fusion Proteins/adverse effects , Recombinant Fusion Proteins/pharmacokinetics , Treatment Outcome
8.
J Gynecol Obstet Biol Reprod (Paris) ; 34(1 Pt 1): 53-61, 2005 Feb.
Article in French | MEDLINE | ID: mdl-15767918

ABSTRACT

OBJECTIVE: The aim of this article is to describe conditions of abortions practices in France. MATERIALS AND METHODS: The study was based on the COCON survey. This survey was carried out among a representative sample of 2863 women aged 18 to 44 living in metropolitan France. Women were interviewed by telephone. The analysis was performed among a sub-sample of 320 women who had had an abortion between 1996 and 2000. Results were compared with those of the national notification of induced abortions. RESULTS: Altogether, the way in which abortions were carried out was appropriate, but differences were observed according to the type of hospital: access to care was easier in the private sector; however a pre-abortion interview was less often carried out and a post-abortion interview less often proposed in the private sector. Besides, in both sectors, women were rarely allowed to choose the abortion technique, or the type of anesthesia in the case of a surgical abortion. CONCLUSION: The COCON study is the first population based survey describing the characteristics of care regarding voluntary abortion. It shows the persistence of differences in practices between the public and the private sectors.


Subject(s)
Abortion, Induced/statistics & numerical data , Adolescent , Adult , Contraception/statistics & numerical data , Female , France , Humans , Pregnancy , Surveys and Questionnaires
9.
Environ Sci Technol ; 37(4): 701-6, 2003 Feb 15.
Article in English | MEDLINE | ID: mdl-12636267

ABSTRACT

Cd bioaccumulation by Rhodospirillum rubrum, a Gram-negative freshwater bacterium, was studied in a synthetic medium. The free ion (Cd2+) was the best predictor of the Cd internalization fluxes. Representation of the short-term uptake fluxes as a function of [Cd2+] in the medium demonstrated a linear relationship, as would be expected for a rate-limiting, first-order internalization with a single transporter. Nonetheless, several different accumulation profiles were observed, depending on the Cd concentration. Cd uptake was regulated differently for concentrations above and below 10(-6) M (or was regulated only above [Cd2+] = 10(-6) M). Short-and long-term studies revealed that regulation was rapidly initiated for the highest Cd concentrations examined, effectively decreasing both adsorbed and internalized Cd. Anodic stripping voltammetry demonstrated that a Cd complexing ligand was produced within minutes upon exposure to 5 x 10(-6) M Cd2+ and that an extracellular sequestration of Cd was one mechanism regulating Cd uptake. Competition studies with other cations revealed a competitive inhibition of Cd uptake by Zn and an uptake enhancement in the presence of Mn and Cu.


Subject(s)
Cadmium/pharmacokinetics , Rhodospirillum rubrum/chemistry , Water Pollutants/pharmacokinetics , Kinetics
10.
Genomics ; 78(1-2): 46-54, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11707072

ABSTRACT

A supernumerary copy of human chromosome 21 (HC21) causes Down syndrome. To understand the molecular pathogenesis of Down syndrome, it is necessary to identify all HC21 genes. The first annotation of the sequence of 21q confirmed 127 genes, and predicted an additional 98 previously unknown "anonymous" genes (predictions (PREDs) and open reading frames (C21orfs)), which were foreseen by exon prediction programs and/or spliced expressed sequence tags. These putative gene models still need to be confirmed as bona fide transcripts. Here we report the characterization and expression pattern of the putative transcripts C21orf7, C21orf11, C21orf15, C21orf18, C21orf19, C21orf22, C21orf42, C21orf50, C21orf51, C21orf57, and C21orf58, the GC-rich sequence DNA-binding factor candidate GCFC (also known as C21orf66), PRED12, PRED31, PRED34, PRED44, PRED54, and PRED56. Our analysis showed that most of the C21orfs originally defined by matching spliced expressed sequence tags were correctly predicted, whereas many of the PREDs, defined solely by computer prediction, do not correspond to genuine genes. Four of the six PREDs were incorrectly predicted: PRED44 and C21orf11 are portions of the same transcript, PRED31 is a pseudogene, and PRED54 and PRED56 were wrongly predicted. In contrast, PRED12 (now called C21orf68) and PRED34 (C21orf63) are now confirmed transcripts. We identified three new genes, C21orf67, C21orf69, and C21orf70, not previously predicted by any programs. This revision of the HC21 transcriptome has consequences for the entire genome regarding the quality of previous annotations and the total number of transcripts. It also provides new candidates for genes involved in Down syndrome and other genetic disorders that map to HC21.


Subject(s)
Chromosomes, Human, Pair 21/genetics , DNA, Complementary/isolation & purification , Open Reading Frames/genetics , Animals , COS Cells , Cloning, Molecular , DNA, Complementary/chemistry , DNA, Complementary/genetics , Down Syndrome/genetics , Expressed Sequence Tags , Genes/genetics , Green Fluorescent Proteins , Humans , Internet , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Mice , Microscopy, Fluorescence , Molecular Sequence Data , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Sequence Analysis, DNA , Transcription, Genetic , Tumor Cells, Cultured
11.
Hum Genet ; 109(1): 40-7, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11479734

ABSTRACT

To estimate the error rate of the gene expression machinery and its possible age-related increase, we compared the occurrence of polymerase errors during replication and transcription in (A)/(T) runs, in DNA and RNA of young and old individuals and of early- and late-passage cultured fibroblasts. We analyzed three human genes: TPRD, TGFBR2, and ATRX containing stretches of (A)8, (A)10, and (T)13, respectively. The error rate was determined by sequencing 100 cloned PCR or RT-PCR fragments from each DNA and RNA sample. The error rates in replication and transcription increased with the stretch length. The pooled error rates for genomic DNA were: TPRD (A)8, TGFBR2 (A)10, and ATRX (T)13: 1%+/-0.41, 15.8%+/-1.3, and 31.3%+/-2.9, while those for RNA were: 3.8%+/-0.5, 19.3%+/-2.1, and 54.3%+/-1.8, respectively. The deletions of one nucleotide were the most frequent errors. In the replication analysis, a significant difference was found in old versus young individuals for the ATRX (T)13. In the transcription analysis, significantly higher error rates were obtained in old versus young individuals for the TPRD (A)8 and TGFBR2 (A)10. For these genes, the error rate in RNA isolated from fibroblasts was significantly higher than that in blood. The data show a trend of age-related increase in replication/transcription errors; however further studies are necessary to confirm this hypothesis, since the sample size is small. This imperfect fidelity of the gene expression process may explain the evolutionary disadvantage of nucleotide repeats within coding sequences, and that these repeats are targets for mutations in human diseases.


Subject(s)
Aging/genetics , DNA Helicases , DNA Replication/genetics , Nuclear Proteins , Transcription, Genetic , Adult , Aged , Aged, 80 and over , Base Sequence , Cell Line , DNA/genetics , DNA Damage , DNA Primers/genetics , DNA-Binding Proteins/genetics , Female , Genome, Human , Humans , Mutation , Protein Serine-Threonine Kinases , Proteins/genetics , RNA/genetics , Receptor, Transforming Growth Factor-beta Type II , Receptors, Transforming Growth Factor beta/genetics , Repetitive Sequences, Nucleic Acid , Transcription Factors/genetics , X-linked Nuclear Protein
12.
Hum Mutat ; 18(2): 101-8, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11462234

ABSTRACT

Recently the TMPRSS3 gene, which encodes a transmembrane serine protease, was found to be responsible for two non-syndromic recessive deafness loci located on human chromosome 21q22.3, DFNB8 and DFNB10. We found evidence for linkage to the DFNB8/10 locus in two unrelated consanguineous Tunisian families segregating congenital autosomal recessive sensorineural deafness. The audiometric tests showed a loss of hearing greater than 70 dB, in all affected individuals of both families. Mutation screening of TMPRSS3 revealed two novel missense mutations, W251C and P404L, altering highly conserved amino acids of the serine protease domain. Both mutations were not found in 200 control Tunisian chromosomes. The detection of naturally-occurring TMPRSS3 missense mutations in deafness families identifies functionally important amino acids. Comparative protein modeling of the TMPRSS3 protease domain predicted that W251C might lead to a structural rearrangement affecting the active site H257 and that P404L might alter the geometry of the active site loop and therefore affect the serine protease activity.


Subject(s)
Hearing Loss, Sensorineural/genetics , Membrane Proteins , Mutation, Missense/genetics , Neoplasm Proteins , Serine Endopeptidases/genetics , Amino Acid Sequence , Audiometry , Base Sequence , Binding Sites , Chromosome Mapping , Chromosomes, Human, Pair 21/genetics , Consanguinity , Conserved Sequence/genetics , DNA Mutational Analysis , Female , Genes, Recessive/genetics , Genetic Linkage/genetics , Genotype , Hearing Loss, Sensorineural/congenital , Humans , Male , Models, Molecular , Molecular Sequence Data , Pedigree , Protein Structure, Tertiary , Serine Endopeptidases/chemistry , Tunisia
13.
Hum Genet ; 108(2): 140-7, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11281453

ABSTRACT

In order to identify candidate genes for Down syndrome phenotypes or monogenic disorders that map to human chromosome 21q22.3, we have used genomic sequence and expressed sequence tags mapping to an autosomal recessive deafness (DFNB10) critical region to isolate a novel 2.5-kb cDNA that maps between TFF1 and D21S49. A semi-quantitative reverse transcription/polymerase chain reaction method revealed that UBASH3A gene expression is limited to only a few tissues, with its highest expression in spleen, peripheral blood leukocytes, and bone marrow. The putative 661-amino-acid protein shows considerable homology to a hypothetical protein from Drosophila melanogaster but only domain homologies to other organisms. Both the human and D. melanogaster proteins contain protein-protein interaction domains, viz., SH3 and ubiquitin-associated (UBA) domains, in addition to a novel domain also containing a nuclear localization signal. This is the first protein described containing both UBA and SH3 domains. The gene, thus called UBASH3A, spans 40 kb and is divided into 15 exons. Mutation analysis excluded UBASH3A as being responsible for DFNB10.


Subject(s)
Chromosomes, Human, Pair 21 , Nuclear Proteins/genetics , Adaptor Proteins, Signal Transducing , Amino Acid Sequence , Base Sequence , Chromosome Mapping , DNA Primers , Down Syndrome/genetics , Humans , Molecular Sequence Data , Nuclear Proteins/chemistry , Phenotype , RNA, Messenger/genetics , Reverse Transcriptase Polymerase Chain Reaction , Sequence Homology, Amino Acid
14.
Genomics ; 72(1): 21-33, 2001 Feb 15.
Article in English | MEDLINE | ID: mdl-11247663

ABSTRACT

Dyneins are multisubunit protein complexes that couple ATPase activity with conformational changes. They are involved in the cytoplasmatic movement of organelles (cytoplasmic dyneins) and the bending of cilia and flagella (axonemal dyneins). Here we present the first complete cDNA and genomic sequences of a human axonemal dynein beta heavy chain gene, DNAH9, which maps to 17p12. The 14-kb-long cDNA is divided into 69 exons spread over 390 kb. The cDNA sequence of DNAH9 was determined using a combination of methods including 5' rapid amplification of cDNA ends, RT-PCR, and cDNA library screening. RT-PCR using nasal epithelium and testis RNA revealed several alternatively spliced transcripts. The genomic structure was determined using three overlapping BACs sequenced by the Whitehead Institute/MIT Center for Genome Research. The predicted protein, of 4486 amino acids, is highly homologous to sea urchin axonemal beta heavy chain dyneins (67% identity). It consists of an N-terminal stem and a globular C-terminus containing the four P-loops that constitute the motor domain. Lack of proper ciliary and flagellar movement characterizes primary ciliary dyskinesia (PCD), a genetically heterogeneous autosomal recessive disorder with respiratory tract infections, bronchiectasis, male subfertility, and, in 50% of cases, situs inversus (Kartagener syndrome, KS). Dyneins are excellent candidate genes for PCD and KS because in over 50% of cases the ultrastructural defects of cilia are related to the dynein complex. Genotype analysis was performed in 31 PCD families with two or more affected siblings using a highly informative dinucleotide polymorphism located in intron 26 of DNAH9. Two families with concordant inheritance of DNAH9 alleles in affected individuals were observed. A mutation search was performed in these two "candidate families," but only polymorphic variants were found. In the absence of pathogenic mutations, the DNAH9 gene has been excluded as being responsible for autosomal recessive PCD in these families.


Subject(s)
Cilia/chemistry , Ciliary Motility Disorders/genetics , Dyneins/genetics , Microtubules/chemistry , Adenosine Triphosphate/metabolism , Amino Acid Motifs , Amino Acid Sequence , Axonemal Dyneins , Binding Sites , Cloning, Molecular , DNA Mutational Analysis , DNA, Complementary , Dyneins/chemistry , Dyneins/physiology , Exons , Female , Genetic Heterogeneity , Guanosine Triphosphate/metabolism , Humans , Introns , Leucine Zippers , Male , Microtubules/metabolism , Molecular Sequence Data , Phenotype , Phosphorylation , Protein Structure, Tertiary , Sequence Alignment
15.
Nat Genet ; 27(1): 59-63, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11137999

ABSTRACT

Approximately 50% of childhood deafness is caused by mutations in specific genes. Autosomal recessive loci account for approximately 80% of nonsyndromic genetic deafness. Here we report the identification of a new transmembrane serine protease (TMPRSS3; also known as ECHOS1) expressed in many tissues, including fetal cochlea, which is mutated in the families used to describe both the DFNB10 and DFNB8 loci. An 8-bp deletion and insertion of 18 monomeric (approximately 68-bp) beta-satellite repeat units, normally present in tandem arrays of up to several hundred kilobases on the short arms of acrocentric chromosomes, causes congenital deafness (DFNB10). A mutation in a splice-acceptor site, resulting in a 4-bp insertion in the mRNA and a frameshift, was detected in childhood onset deafness (DFNB8). This is the first description of beta-satellite insertion into an active gene resulting in a pathogenic state, and the first description of a protease involved in hearing loss.


Subject(s)
DNA, Satellite/genetics , Deafness/congenital , Deafness/enzymology , Genes, Recessive/genetics , Membrane Proteins , Mutagenesis, Insertional/genetics , Neoplasm Proteins , Serine Endopeptidases/genetics , Adult , Age of Onset , Base Sequence , Child , Consanguinity , Contig Mapping , DNA Mutational Analysis , Deafness/epidemiology , Deafness/genetics , Exons/genetics , Female , Frameshift Mutation/genetics , Humans , In Situ Hybridization, Fluorescence , Israel , Male , Molecular Sequence Data , Pakistan , Pedigree , RNA Splice Sites/genetics , RNA, Messenger/analysis , RNA, Messenger/genetics , Sequence Alignment , Serine Endopeptidases/metabolism
16.
Hum Genet ; 109(6): 569-75, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11810268

ABSTRACT

The human TPTE gene encodes a testis-specific protein that contains four potential transmembrane domains and a protein tyrosine phosphatase motif, and shows homology to the tumor suppressor PTEN/MMAC1. Chromosomal mapping revealed multiple copies of the TPTE gene present on the acrocentric chromosomes 13, 15, 21 and 22, and the Y chromosome. Zooblot analysis suggests that mice may possess only one copy of TPTE. In the present study, we report the isolation and initial characterization of the full-length cDNA of the mouse homologue Tpte. At least three different mRNA transcripts ( Tpte.a, b, c) are produced via alternative splicing, encoding predicted proteins that would contain four potential transmembrane domains and a protein tyrosine phosphatase motif. Transfection of a 5'EGFP-TPTE fusion protein in Hela cells revealed an intracellular localization within the Golgi apparatus. Tpte was mapped by radiation hybrid to a region of mouse chromosome 8 that shows conserved synteny with human 13q14.2-q21 between NEK3 and SGT1. This region of the human genome was found to contain a partial, highly diverged copy of TPTE that is likely to represent the ancestral copy from which the other copies of TPTE arose through duplication events. The Y chromosome copy of TPTE is a pseudogene and is not therefore involved in the testis expression of this gene family.


Subject(s)
Evolution, Molecular , Golgi Apparatus/chemistry , Membrane Proteins/genetics , Multigene Family/genetics , Protein Tyrosine Phosphatases , Amino Acid Motifs , Amino Acid Sequence , Animals , Cell Compartmentation , Chromosome Mapping , Chromosomes, Human, Pair 13 , Humans , Male , Mice , Molecular Sequence Data , PTEN Phosphohydrolase , Phosphoric Monoester Hydrolases/genetics , Phylogeny , Sequence Homology, Amino Acid , Tumor Suppressor Proteins/genetics , Vertebrates/classification , Vertebrates/genetics
17.
Genomics ; 70(2): 190-200, 2000 Dec 01.
Article in English | MEDLINE | ID: mdl-11112347

ABSTRACT

Using multiple exons trapped from human chromosome 21 (HC21)-specific cosmids with homology to a putative Arabidopsis thaliana glycerol 3-phosphate permease, we have determined the full-length cDNA sequence of a novel HC21 gene encoding a putative sugar-phosphate transporter (HGMW-approved symbol SLC37A1, aka G3PP). The predicted protein has 12 putative transmembrane domains and is also highly homologous to bacterial glpT proteins. The transcript was precisely mapped to 21q22.3 between D21S49 and D21S113. Comparison of the SLC37A1 cDNA to genomic sequence revealed that the gene encompasses 82 kb, and it is split into 19 coding exons and 7 untranslated exons, which are alternatively spliced in a complex and tissue-specific manner. Glycerol 3-phosphate (G3P) is produced by glycerol kinase (GK) and is found in several biochemical pathways in different cellular compartments, such as the glycerol phosphate shuttle and glycerophospholipid synthesis. Thus SLC37A1 mutations may cause a phenotype similar to GK deficiency. Mutational analyses of SLC37A1 in seven patients with no mutations in the GK gene and low GK activity revealed only nonpathogenetic sequence variants, excluding SLC37A1 as the gene for the phenotype in these patients. SLC37A1 maps in the refined critical region of the autosomal recessive deafness locus, DFNB10, on 21q22.3. Mutation analyses also excluded SLC37A1 as the gene for DFNB10.


Subject(s)
Aquaporins , Arabidopsis Proteins , Chromosomes, Human, Pair 21 , DNA Mutational Analysis , Glycerol Kinase/genetics , Membrane Transport Proteins/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , DNA, Complementary , Expressed Sequence Tags , Humans , Membrane Transport Proteins/chemistry , Molecular Sequence Data , Phenotype , Reverse Transcriptase Polymerase Chain Reaction , Sequence Homology, Amino Acid
18.
Genome Res ; 10(12): 2006-21, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11116095

ABSTRACT

Trisomy 21, or Down syndrome (DS), is the most common genetic cause of mental retardation. Changes in the neuropathology, neurochemistry, neurophysiology, and neuropharmacology of DS patients' brains indicate that there is probably abnormal development and maintenance of central nervous system structure and function. The segmental trisomy mouse (Ts65Dn) is a model of DS that shows analogous neurobehavioral defects. We have studied the global gene expression profiles of normal and Ts65Dn male and normal female mice brains (P30) using the serial analysis of gene expression (SAGE) technique. From the combined sample we collected a total of 152,791 RNA tags and observed 45,856 unique tags in the mouse brain transcriptome. There are 14 ribosomal protein genes (nine under expressed) among the 330 statistically significant differences between normal male and Ts65Dn male brains, which possibly implies abnormal ribosomal biogenesis in the development and maintenance of DS phenotypes. This study contributes to the establishment of a mouse brain transcriptome and provides the first overall analysis of the differences in gene expression in aneuploid versus normal mammalian brain cells.


Subject(s)
Brain Chemistry/genetics , Down Syndrome/genetics , Gene Expression Profiling/methods , Transcription, Genetic , Animals , Blotting, Northern , Crosses, Genetic , Disease Models, Animal , Female , Gene Library , Genetic Markers/genetics , Male , Mice , Mice, Inbred C3H , Mice, Inbred C57BL , Sequence Tagged Sites , Trisomy/genetics
19.
Cytogenet Cell Genet ; 90(1-2): 119-22, 2000.
Article in English | MEDLINE | ID: mdl-11060460

ABSTRACT

The transcription factor FOXJ1 (alias HFH-4 or FKHL13) of the winged-helix/forkhead family is expressed in cells with cilia or flagella, and seems to be involved in the regulation of axonemal structural proteins. The knockout mouse Foxj1(-/-) shows abnormalities of organ situs, consistent with random determination of left-right asymmetry, and a complete absence of cilia. The human FOXJ1 gene which maps to chromosome 17q, is thus an excellent candidate gene for Kartagener Syndrome (KS), a subphenotype of Primary Ciliary Dyskinesia (PCD), characterized by bronchiectasis, chronic sinusitis and situs inversus. We have collected samples from 61 PCD families, in 31 of which there are at least two affected individuals. Two families with complete aciliogenesis, and six families, in which the affected members have microsatellite alleles concordant for a locus on distal chromosome 17q, were screened for mutations in the two exons and intron-exon junctions of the FOXJ1 gene. No sequence abnormalities were observed in the DNAs of the affected individuals of the selected families. These results demonstrate that the FOXJ1 gene is not responsible for the PCD/KS phenotype in the families examined.


Subject(s)
Ciliary Motility Disorders/genetics , DNA-Binding Proteins , Mutation/genetics , Trans-Activators/genetics , Alleles , Amino Acid Sequence , Base Sequence , DNA Mutational Analysis , Databases as Topic , Exons/genetics , Forkhead Transcription Factors , Genotype , Humans , Introns/genetics , Kartagener Syndrome/genetics , Microsatellite Repeats/genetics , Molecular Sequence Data , Phenotype , Polymorphism, Genetic/genetics
20.
Genomics ; 68(1): 22-9, 2000 Aug 15.
Article in English | MEDLINE | ID: mdl-10950923

ABSTRACT

An autosomal recessive nonsyndromic deafness locus, DFNB10, was previously localized to a 12-cM region near the telomere of chromosome 21 (21q22.3). This locus was discovered in a large, consanguineous Palestinian family. We have identified and ordered a total of 50 polymorphic microsatellite markers in 21q22.3, comprising 16 published and 34 new markers, precisely mapped and ordered on BAC/cosmid contigs. Using these microsatellite markers, the locus for DFNB10 has been refined to an area of less than 1 Mb between markers 1016E7.CA60 and 1151C12.GT45. Six previously published cDNAs were mapped to this critical region, and their genomic structures were determined to facilitate mutation analysis in DFNB10. All six genes in this region (in order from centromere to telomere: White/ABCG1, TFF3, TFF2, TFF1, PDE9A, and NDUVF3) have been screened and eliminated as candidates for DFNB10. The new microsatellite markers and single nucleotide polymorphisms identified in this study should enable the refined mapping of other genetic diseases that map to 21q22.3. In addition, the critical region for DFNB10 has been reduced to a size amenable to an intensive positional cloning effort.


Subject(s)
Deafness/genetics , Genes/genetics , Microsatellite Repeats/genetics , Chromosome Mapping , Chromosomes, Human, Pair 11/genetics , DNA/chemistry , DNA/genetics , Deafness/congenital , Family Health , Female , Genes, Recessive , Genetic Linkage , Genetic Predisposition to Disease/genetics , Haplotypes , Humans , Infant, Newborn , Lod Score , Male , Molecular Sequence Data , Mutation , Pedigree , Polymorphism, Genetic , Sequence Analysis, DNA , Trefoil Factor-2
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