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1.
Org Biomol Chem ; 2024 Jul 18.
Article in English | MEDLINE | ID: mdl-39022818

ABSTRACT

The first example of N-confused strapped calix[4]pyrrole 5 is presented. The structural integrity of 5 and its regular isomer 4 was unambiguously confirmed by single crystal X-ray diffraction analysis. Anion binding studies using 1H NMR titration carried out in CDCl3 revealed a small but detectable tendency of 5 to interact with an anion. Conversely, the isomeric regular strapped calix[4]pyrrole 4 displayed high selectivity for fluoride anions under similar experimental conditions. The high fluoride selectivity of 4 and unexpectedly low anion affinity of 5 were ascribed to the presence of intramolecular hydrogen bonds within strapping subunits.

2.
J Fluoresc ; 34(2): 879-884, 2024 Mar.
Article in English | MEDLINE | ID: mdl-37405576

ABSTRACT

A new carbazole-coupled tetrakis-(1 H-pyrrole-2-carbaldehyde) anion receptor 1 has been designed and synthesized. Anion binding studies in organic media using fluorescence and UV-vis spectroscopy revealed that receptor 1 is capable of sensing HP2O73- with high selectivity. Addition of HP2O73- to THF solution of 1 resulted in the emergence of a new broad band at longer wavelength along with quenching of the original emission band forming a ratiometric response. Based on dynamic light scattering (DLS) experiment and fluorescence lifetime measurement, we propose that the emergence of new emission band in the presence of HP2O73- ion is due to the aggregation-induced excimer formation.

3.
Chem Commun (Camb) ; 59(48): 7407-7410, 2023 Jun 13.
Article in English | MEDLINE | ID: mdl-37233195

ABSTRACT

Meso-3,5-bis(trifluoromethyl)phenyl picket calix[4]pyrrole 1 displays excellent fluoride anion transport activity across artificial lipid bilayers showing EC50 = 2.15 µM (at 450 s in EYPC vesicle) with high fluoride over chloride ion selectivity. The high fluoride selectivity of 1 was ascribed to the formation of a sandwich type π-anion-π interaction complex.

4.
Front Hum Neurosci ; 17: 1297467, 2023.
Article in English | MEDLINE | ID: mdl-38283093

ABSTRACT

The neuropathological hallmarks of Alzheimer's disease (AD), Parkinson's disease (PD), frontotemporal lobar degeneration (FTLD), and amyotrophic lateral sclerosis (ALS) are present in urban children exposed to fine particulate matter (PM2.5), combustion and friction ultrafine PM (UFPM), and industrial nanoparticles (NPs). Metropolitan Mexico City (MMC) forensic autopsies strongly suggest that anthropogenic UFPM and industrial NPs reach the brain through the nasal/olfactory, lung, gastrointestinal tract, skin, and placental barriers. Diesel-heavy unregulated vehicles are a key UFPM source for 21.8 million MMC residents. We found that hyperphosphorylated tau, beta amyloid1-42, α-synuclein, and TAR DNA-binding protein-43 were associated with NPs in 186 forensic autopsies (mean age 27.45 ± 11.89 years). The neurovascular unit is an early NPs anatomical target, and the first two decades of life are critical: 100% of 57 children aged 14.8 ± 5.2 years had AD pathology; 25 (43.9%) AD+TDP-43; 11 (19.3%) AD + PD + TDP-43; and 2 (3.56%) AD +PD. Fe, Ti, Hg, Ni, Co, Cu, Zn, Cd, Al, Mg, Ag, Ce, La, Pr, W, Ca, Cl, K, Si, S, Na, and C NPs are seen in frontal and temporal lobes, olfactory bulb, caudate, substantia nigra, locus coeruleus, medulla, cerebellum, and/or motor cortical and spinal regions. Endothelial, neuronal, and glial damages are extensive, with NPs in mitochondria, rough endoplasmic reticulum, the Golgi apparatus, and lysosomes. Autophagy, cell and nuclear membrane damage, disruption of nuclear pores and heterochromatin, and cell death are present. Metals associated with abrasion and deterioration of automobile catalysts and electronic waste and rare earth elements, i.e., lanthanum, cerium, and praseodymium, are entering young brains. Exposure to environmental UFPM and industrial NPs in the first two decades of life are prime candidates for initiating the early stages of fatal neurodegenerative diseases. MMC children and young adults-surrogates for children in polluted areas around the world-exhibit early AD, PD, FTLD, and ALS neuropathological hallmarks forecasting serious health, social, economic, academic, and judicial societal detrimental impact. Neurodegeneration prevention should be a public health priority as the problem of human exposure to particle pollution is solvable. We are knowledgeable of the main emission sources and the technological options to control them. What are we waiting for?

5.
J Biomol Struct Dyn ; 40(24): 13965-13975, 2022.
Article in English | MEDLINE | ID: mdl-34766876

ABSTRACT

Pathogenic RNA viruses are emerging as one of the major threats and posing challenges to human community. RNA viruses have an exceptionally shorter generation time and easy to adapt in host cells. The recent emergence of SARS-CoV-2, a long RNA virus, has shown us how difficult it is to overcome this kind of pandemic without understanding the viral infection and replication mechanisms. It is essential to comprehend replications of the viral genome, including RNA polymerization and the final capping process. The mRNAs of SARS-CoV-2 coronaviruses are protected at their 5'-ends by cap structure. The cap-like system plays a significant role in viral translational process, viral RNA stability, and scatting in detecting innate immune recognition in host cells. Two coronavirus enzymes, Nsp14 and Nsp16, critically help in the formation of capping and are considered as potential drug targets for antiviral therapy. Natural and herbal medicines have a past record of treating various acute respiratory diseases. In this work, we have exploited 56000 natural compounds to screen potential inhibitors against NSP16. In silico virtual screening, docking and Molecular Dynamics (MD) simulation studies were performed to understand how these potential inhibitors are bound to NSP16. We observed that the most highly screened compound binds to protein molecules with a high dock score, primarily through hydrophobic interactions and hydrogen bonding, as previously reported for NSP16. Compound-13 (2-hydroxy-N-({1-[2-hydroxy-1-(hydroxymethyl)ethyl]piperidin-3-yl}methyl)-5-methylbenzamide) and compound-51 (N-(2-isobutoxybenzyl)-N,2-dimethyl-2,8-diazaspiro[4.5]decane-3-carboxamide) occupied in active site along with good pharmokinetices properties. In conclusion, the selected compounds could be used as a novel therapeutic against SARS-CoV-2.Communicated by Ramaswamy H. Sarma.


Subject(s)
COVID-19 , Methyltransferases , Humans , Methyltransferases/chemistry , SARS-CoV-2/genetics , RNA, Viral/genetics , Viral Nonstructural Proteins/chemistry , Molecular Docking Simulation
6.
Chemphyschem ; 15(18): 4006-10, 2014 Dec 15.
Article in English | MEDLINE | ID: mdl-25319179

ABSTRACT

The dimensionally restricted, diffusion-driven volumetric change of almost flat nucleated surface nanobubbles hosted on dispersed nanoscale surfaces is proposed as the probable mechanism of heterogeneous bubble generation during polymer-nanoscale-nucleant suspension foaming. By conducting numerical simulations, this hypothesis is used to predict the final bubble sizes upon polymeric foaming with nanoscale nucleants and to compare them with reported experimentally determined values. The volumetric change in the bubble hosted on the miniscule surface is envisaged to occur due to two parallel diffusion processes: 1) through the contact line of the bubble cap with the surface, and 2) through the curved gas-polymer interface. The foaming conditions determine the direction and molar rate of both these diffusions. The mechanism explains the relative nucleating efficiency of nanoscale surfaces experimentally observed during reactive and nonreactive polymeric foaming by predicting the growth or dissolution of the bubble. In the case of nonreactive thermoplastic foaming, the size of the bubbles released to the bulk from the nanoscale surface varies in a near linear fashion with respect to the size of the nucleants, limited to a maximum nucleant size. Beyond this maximum, the size of bubble generated is independent of the nucleant size. However, increase in the initial nanoscopic contact angle does not significantly affect the bubble size upon detachment from the surface.

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