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1.
Sci Rep ; 13(1): 12380, 2023 Jul 31.
Article in English | MEDLINE | ID: mdl-37524787

ABSTRACT

Understanding the adsorption behavior of base probes in aluminosilicates and its relationship to the intrinsic acidity of Brønsted acid sites (BAS) is essential for the catalytic applications of these materials. In this study, we investigated the adsorption properties of base probe molecules with varying proton affinities (acetonitrile, acetone, formamide, and ammonia) within six different aluminosilicate frameworks (FAU, CHA, IFR, MOR, FER, and TON). An important objective was to propose a robust criterion for evaluating the intrinsic BAS acidity (i.e., state of BAS deprotonation). Based on the bond order conservation principle, the changes in the covalent bond between the aluminum and oxygen carrying the proton provide a good description of the BAS deprotonation state. The ammonia and formamide adsorption cause BAS deprotonation and cannot be used to assess intrinsic BAS acidity. The transition from ion-pair formation, specifically conjugated acid/base interaction, in formamide to strong hydrogen bonding in acetone occurs within a narrow range of base proton affinities (812-822 kJ mol-1). The adsorption of acetonitrile results in the formation of hydrogen-bonded complexes, which exhibit a deprotonation state that follows a similar trend to the deprotonation induced by acetone. This allows for a semi-quantitative comparison of the acidity strengths of BAS within and between the different aluminosilicate frameworks.

2.
Sci Rep ; 12(1): 7301, 2022 May 04.
Article in English | MEDLINE | ID: mdl-35508590

ABSTRACT

Acid forms of zeolites have been used in industry for several decades but scaling the strength of their acid centers is still an unresolved and intensely debated issue. In this paper, the Brønsted acidity strength in aluminosilicates measured by their deprotonation energy (DPE) was investigated for FAU, CHA, IFR, MOR, FER, MFI, and TON zeolites by means of periodic and cluster calculations at the density functional theory (DFT) level. The main drawback of the periodic DFT is that it does not provide reliable absolute values due to spurious errors associated with the background charge introduced in anion energy calculations. To alleviate this problem, we employed a novel approach to cluster generation to obtain accurate values of DPE. The cluster models up to 150 T atoms for the most stable Brønsted acid sites were constructed on spheres of increasing diameter as an extension of Harrison's approach to calculating Madelung constants. The averaging of DPE for clusters generated this way provides a robust estimate of DPE for investigated zeolites despite slow convergence with the cluster size. The accuracy of the cluster approach was further improved by a scaled electrostatic embedding scheme proposed in this work. The electrostatic embedding model yields the most reliable values with the average deprotonation energy of about 1245 ± 9 kJ·mol-1 for investigated acidic zeolites. The cluster calculations strongly indicate a correlation between the deprotonation energy and the zeolite framework density. The DPE results obtained with our electrostatic embedding model are highly consistent with the previously reported QM/MM and periodic calculations.

3.
J Chem Phys ; 156(9): 094708, 2022 Mar 07.
Article in English | MEDLINE | ID: mdl-35259911

ABSTRACT

Structures of purely siliceous materials in the International Zeolite Association database were investigated with four different theoretical methods ranging from the empirical approaches, such as the distance least squares and force fields to the computationally demanding dispersion-corrected density functional theory method employing the generalized gradient approximation-type functional. The structural characteristics were first evaluated for dense silica polymorphs, for which reliable low-temperature experiments are available. Due to the significant errors in experimentally determined atomic positions of siliceous zeolites, lattice parameters and the cell volume were proposed as reliable descriptors for the structural assessment of zeolite frameworks. In this regard, the most consistently performing (systematically underestimating/overestimating) methods are the Sanders-Leslie-Catlow (SLC) force field and the PBEsol density functional. The best overall agreement with the experiment is observed for PBEsol-D2. However, it is a result of fortuitous error cancellations rather than improved description upon adding dispersion correction. We proposed two approaches to estimate accurate cell volumes of siliceous materials from theoretical data: (i) using the SLC and PBEsol volumes as lower and upper bounds and (ii) using a structural response to the dispersion correction along with the SLC compressibility as an additional criterion.

4.
Phys Chem Chem Phys ; 18(27): 18063-73, 2016 Jul 21.
Article in English | MEDLINE | ID: mdl-27326803

ABSTRACT

The catalytic activity and the adsorption properties of zeolites depend on their topology and composition. For a better understanding of the structure-activity relationship it is advantageous to focus just on one of these parameters. Zeolites synthesized recently by the ADOR protocol offer a new possibility to investigate the effect of the channel diameter on the adsorption and catalytic properties of zeolites: UTL, OKO, and PCR zeolites consist of the same dense 2D layers (IPC-1P) that are connected with different linkers (D4R, S4R, O-atom, respectively) resulting in the channel systems of different sizes (14R × 12R, 12R × 10R, 10R × 8R, respectively). Consequently, extra-framework cation sites compensating charge of framework Al located in these dense 2D layers (channel-wall sites) are the same in all three zeolites. Therefore, the effect of the zeolite channel size on the Lewis properties of the cationic sites can be investigated independent of other factors determining the quality of Lewis sites. UTL, OKO, and PCR and pillared 2D IPC-1PI materials were prepared in Li-form and their properties were studied by a combination of experimental and theoretical methods. Qualitatively different conclusions are drawn for Li(+) located at the channel-wall sites and at the intersection sites (Li(+) located at the intersection of two zeolite channels): the Lewis acid strength of Li(+) at intersection sites is larger than that at channel-wall sites. The Lewis acid strength of Li(+) at channel-wall sites increases with decreasing channel size. When intersecting channels are small (10R × 8R in PCR) the intersection Li(+) sites are no longer stable and Li(+) is preferentially located at the channel-wall sites. Last but not least, the increase in adsorption heats with the decreasing channel size (due to enlarged dispersion contribution) is clearly demonstrated.

5.
J Chem Theory Comput ; 11(1): 230-8, 2015 Jan 13.
Article in English | MEDLINE | ID: mdl-26574221

ABSTRACT

The performance of different exchange-correlation functionals was evaluated for the description of the interaction of small molecules with (i) cluster models containing Cu(2+) and Fe(3+) coordinatively unsaturated metal sites and (ii) HKUST-1 metal organic framework (MOF). Adsorbates forming dispersion-bound complexes (CH4), complexes with important dispersion and electrostatic contributions (H2, N2, CO2), and complexes stabilized also by a partial dative bond (CO, H2O, and NH3) were considered. The interaction with coordinatively unsaturated sites was evaluated with respect to the coupled-cluster calculations for Cu(2+) and Fe(3+) centers represented by cluster models. The adsorption on dispersion-stabilized sites was examined for the cage-window and the cage-center sites in HKUST-1 with respect to the experimental and DFT/CC results. None of the functionals considered can accurately describe the interaction of all seven adsorbates with Cu(2+) and Fe(3+) sites and with dispersion-dominated adsorption sites. The interaction with coordinatively unsaturated sites was frequently underestimated, for adsorbates forming a partial dative bond in particular, while the adsorption at dispersion-stabilized sites was overestimated. Consequently, interaction energies calculated for different adsorption sites were often in qualitatively incorrect order. The optimal exchange-correlation functional for a particular adsorbate/MOF can thus be found by comparing the performance of various functionals with respect to highly accurate calculations on smaller cluster models as a good representative of MOF structural building blocks.

6.
J Phys Chem A ; 118(35): 7526-34, 2014 Sep 04.
Article in English | MEDLINE | ID: mdl-24697515

ABSTRACT

The adsorption and catalytic properties of three-dimensional zeolite UTL were investigated computationally along with properties of its two-dimensional analogue IPC-1P that can be obtained from UTL by a removal of D4R units. Adsorption properties and Lewis acidity of extra-framework Li(+) sites were investigated for both two- and three-dimensional forms of UTL using the carbon monoxide as a probe molecule. The CO adsorption enthalpies, calculated with various dispersion-corrected DFT methods, including DFT/CC, DFT-D2, and vdW-DF2, and the CO stretching frequencies obtained with the νCO/rCO correlation method are compared for corresponding Li(+) sites in 3D and 2D UTL zeolite. For the majority of framework Al positions the Li(+) cation is preferably located in one of the channel wall sites and such sites remains unchanged upon the 3D → 2D UTL transformation; consequently, the adsorption enthalpies become only slightly smaller in 2D UTL (less than 3 kJ mol(-1)) due to the missing part of dispersion interactions and νCO becomes also only up to 5 cm(-1) smaller in 2D UTL due to the missing repulsion with framework oxygen atoms from the opposite site of the zeolite channel (effect from the top). However, when Li(+) is located in the intersection site in 3D UTL (about 20% probability), its coordination with the framework is significantly increased in 2D UTL and that is accompanied by significant decrease of both νCO (about 20 cm(-1)) and adsorption enthalpy (about 20 kJ mol(-1)). Because the intersection sites in 3D UTL are the most active adsorption and catalytic Lewis sites, the results reported herein suggest that the 3D → 2D transformation of UTL zeolite is connected with partial decrease of zeolite activity in processes driven by Lewis acid sites.

7.
Phys Chem Chem Phys ; 16(21): 10129-41, 2014 Jun 07.
Article in English | MEDLINE | ID: mdl-24549190

ABSTRACT

Brønsted-acid zeolites are currently being used as catalysts in a wide range of technological processes, spanning from the petrochemical industry to biomass upgrade, methanol to olefin conversion and the production of fine chemicals. For most of the involved chemical processes, acid strength is a key factor determining catalytic performance, and hence there is a need to evaluate it correctly. Based on simplicity, the magnitude of the red shift of the O-H stretching frequency, Δν(OH), when the Brønsted-acid hydroxyl group of protonic zeolites interacts with an adsorbed weak base (such as carbon monoxide or dinitrogen) is frequently used for ranking acid strength. Nevertheless, the enthalpy change, ΔH(0), involved in that hydrogen-bonding interaction should be a better indicator; and in fact Δν(OH) and ΔH(0) are often found to correlate among themselves, but, as shown herein, that is not always the case. We report on experimental determination of the interaction (at a low temperature) of carbon monoxide and dinitrogen with the protonic zeolites H-MCM-22 and H-MCM-56 (which have the MWW structure type) showing that the standard enthalpy of formation of OH···CO and OH···NN hydrogen-bonded complexes is distinctively smaller than the corresponding values reported in the literature for H-ZSM-5 and H-FER, and yet the corresponding Δν(OH) values are significantly larger for the zeolites having the MWW structure type (DFT calculations are also shown for H-MCM-22). These rather unexpected results should alert the reader to the risk of using the O-H frequency shift probed by an adsorbed weak base as a general indicator for ranking zeolite Brønsted acidity.

8.
Chemphyschem ; 13(2): 488-95, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22170696

ABSTRACT

The adsorption of CO in metal-organic framework CuBTC material is investigated by a combination of theoretical and experimental approaches. The adsorption enthalpy of CO on CuBTC determined experimentally to be -29 kJ mol(-1) at the zero-coverage limit is in very good agreement with the adsorption enthalpy calculated at the combined DFT-ab initio level with the periodic model. Calculations show that polycarbonyl complexes cannot be formed on regular coordinatively unsaturated sites in CuBTC. Experimental IR spectra of the CO probe molecule adsorbed in CuBTC are interpreted based on calculated CO stretching frequencies. Calculations show that long-range interactions are insignificant for the CO/CuBTC system and that this system can be accurately modeled with just a Cu(2)(HCOO)(4) cluster model of the paddle wheel. The reliability of various methods for the description of CO interaction with the Cu(2+) site in CuBTC is discussed based on the experimental results and accurate coupled-cluster calculations. It is shown that standard exchange-correlation functionals do not provide a reliable description of CO interaction with coordinatively unsaturated Cu(2+) sites in CuBTC.

9.
J Phys Chem A ; 115(41): 11412-22, 2011 Oct 20.
Article in English | MEDLINE | ID: mdl-21882845

ABSTRACT

A combined experimental-computational approach was used to study the self-organization and microenvironment of 1-methylnaphthalene (1MN) deposited on the surface of artificial snow grains from vapors at 238 K. The specific surface area of this snow (1.1 × 10(4) cm(2) g(-1)), produced by spraying very fine droplets of pure water from a nebulizer into liquid nitrogen, was determined using valerophenone photochemistry to estimate the surface coverage by 1MN. Fluorescence spectroscopy at 77 K, in combination with molecular dynamics simulations, and density functional theory (DFT) and second-order coupled cluster (CC2) calculations, provided evidence for the occurrence of ground- and excited-state complexes (excimers) and other associates of 1MN on the snow grains' surface. Only weak excimer fluorescence was observed for a loading of 5 × 10(-6) mol kg(-1), which is ∼2-3 orders of magnitude below monolayer coverage. However, the results indicate that the formation of excimers is favored at higher surface loadings (>5 × 10(-5) mol kg(-1)), albeit still being below monolayer coverage. The calculations of excited states of monomer and associated moieties suggested that a parallel-displaced arrangement is responsible for the excimer emission observed experimentally, although some other associations, such as T-shape dimer structures, which do not provide excimer emission, can still be relatively abundant at this surface concentration. The hydrophobic 1MN molecules, deposited on the ice surface, which is covered by a relatively flexible quasi-liquid layer at 238 K, are then assumed to be capable of dynamic motion resulting in the formation of energetically preferred associations to some extent. The environmental implications of organic compounds' deposition on snow grains and ice are discussed.


Subject(s)
Molecular Dynamics Simulation , Naphthalenes/chemistry , Quantum Theory , Snow/chemistry , Surface Properties
10.
J Phys Chem A ; 115(41): 11387-93, 2011 Oct 20.
Article in English | MEDLINE | ID: mdl-21809813

ABSTRACT

Accurate interaction energies of nonpolar (argon) and polar (water) adsorbates with graphene-based carbon allotropes were calculated by means of a combined density functional theory (DFT)-ab initio computational scheme. The calculated interaction energy of argon with graphite (-9.7 kJ mol(-1)) is in excellent agreement with the available experimental data. The calculated interaction energy of water with graphene and graphite is -12.8 and -14.6 kJ mol(-1), respectively. The accuracy of combined DFT-ab initio methods is discussed in detail based on a comparison with the highly precise interaction energies of argon and water with coronene obtained at the coupled-cluster CCSD(T) level extrapolated to the complete basis set (CBS) limit. A new strategy for a reliable estimate of the CBS limit is proposed for systems where numerical instabilities occur owing to basis-set near-linear dependence. The most accurate estimate of the argon and water interaction with coronene (-8.1 and -14.0 kJ mol(-1), respectively) is compared with the results of other methods used for the accurate description of weak intermolecular interactions.


Subject(s)
Argon/chemistry , Carbon/chemistry , Graphite/chemistry , Water/chemistry , Adsorption , Quantum Theory , Surface Properties
11.
Phys Chem Chem Phys ; 12(24): 6413-22, 2010 Jun 28.
Article in English | MEDLINE | ID: mdl-20532422

ABSTRACT

The adsorption of CO(2) in Li-, Na-, and K-FER was investigated by a combination of volumetric adsorption experiments, FTIR spectroscopy, and density functional theory. Experimental isosteric heats of CO(2), Q(st), depend significantly on the cation size, cation concentration, and on the amount of adsorbed CO(2). The differences observed in experimentally determined isosteric heats were interpreted at the molecular level based on good agreement between experimental and calculated characteristics. The highest interaction energies were found for CO(2) adsorbed on so-called "dual cation sites" in which CO(2) is bridged between two alkali metal cations. The formation of CO(2) adsorption complexes on dual cation sites is particularly important on Na-FER and K-FER samples with higher cation concentration. On the contrary, the differences in Q(st) observed for Li-FER samples are due to the changes in the Li(+) coordination with the framework. The DFT/CC calculations show that the dispersion interactions between CO(2) and the zeolites framework are rather large (about -20 kJ mol(-1)).

12.
J Chem Phys ; 132(19): 194708, 2010 May 21.
Article in English | MEDLINE | ID: mdl-20499985

ABSTRACT

The interaction potential confining the stretching and translational motions of a molecular hydrogen physisorbed on the graphene surface has been calculated by means of the DFT/CC approach. Using a simple adiabatic separation of the stretching and translational motions, a set of effective stretching potentials is generated by performing a "finite box" integrating over the translational degrees of freedom. The resulting potentials, forming energetically narrow bands, are used to evaluate the corresponding average stretching energies, which are in turn compared to their experimental counterparts. The mass-dependent "translational" corrections of the purely stretching potential significantly improve the theory versus experiment agreement, thus evidencing their importance in the physisorption processes. Although not fully quantitative, the DFT/CC stretching potentials seem to exhibit physically correct shapes, as their morphing by only a few parameters allows for a quantitative fitting of the observed vibrational energies in terms of the effective (mass-dependent) interaction potentials.


Subject(s)
Graphite/chemistry , Hydrogen/chemistry , Quantum Theory , Vibration , Adsorption , Surface Properties
13.
Phys Chem Chem Phys ; 12(24): 6438-44, 2010 Jun 28.
Article in English | MEDLINE | ID: mdl-20428580

ABSTRACT

The physical adsorption of molecules (C(2)H(2), C(2)H(4), C(2)H(6), C(6)H(6), CH(4), H(2), H(2)O, N(2), NH(3), CO, CO(2), Ar) on a graphite substrate has been investigated at the DFT/CC level of theory. The calculated DFT/CC interaction energies were compared with the available experimental data at the zero coverage limit. The differences between the DFT/CC results and experiment are within a few tenths of kJ mol(-1) for the most accurate experimental estimates (Ar, H(2), N(2), CH(4)) and within 1-2 kJ mol(-1) for the other systems (C(2)H(2), C(2)H(4), C(2)H(6), C(6)H(6), CO, CO(2)). For water-graphite and ammonia-graphite complexes, DFT/CC predicts interaction energies of 13 kJ mol(-1) in good accord with the DF-DFT-SAPT and DFT-D calculations. The relevance of the results obtained with the coronene model for the description of the physisorption on graphite surface was also studied.


Subject(s)
Graphite/chemistry , Adsorption , Gases/chemistry , Polycyclic Compounds/chemistry , Surface Properties , Thermodynamics
14.
Chemphyschem ; 10(11): 1868-73, 2009 Aug 03.
Article in English | MEDLINE | ID: mdl-19399823

ABSTRACT

The interaction of molecular hydrogen with carbon nanostructures is investigated within the DFT/CC correction scheme. The DFT/CC results are compared with the benchmark calculations at the CCSD(T) level of theory for benzene and naphthalene, and at the MP2 level for the more extended systems. The DFT/CC method offers a reliable alternative to the highly correlated ab initio calculations at a cost comparable to the standard DFT method. The results for H(2) adsorbed on graphene as well as single-wall carbon nanotubes (SWCNT) are presented. The DFT/CC binding energy on graphene of 5.4 kJ mol(-1) is in good agreement with experiment (5.00+/-0.05 kJ mol(-1)). For (10,10)-SWCNT, the H(2) molecule is mostly stabilized inside the tube with an estimated binding energy of 7.2 kJ mol(-1).

15.
Chemphyschem ; 9(12): 1702-8, 2008 Aug 25.
Article in English | MEDLINE | ID: mdl-18651623

ABSTRACT

The potential energy surfaces of the naphthalene dimer and benzene-naphthalene complexes are investigated using the recently developed DFT/CCSD(T) correction scheme [J. Chem. Phys. 2008, 128, 114 102]. One and three minima are located on the PES of the benzene-naphthalene and the naphthalene dimer complexes, respectively, all of which are of the parallel-displaced type. The stabilities of benzene-naphthalene and the naphthalene dimer are -4.2 and -6.2 kcal mol(-1), respectively. Unlike the benzene dimer, where the T-shaped complex is the global minimum, the lowest-energy T-shaped structure is about 0.2 and 1.6 kcal mol(-1) above the global minimum on the benzene-naphthalene and the naphthalene dimer potential energy surfaces, respectively.


Subject(s)
Benzene/chemistry , Naphthalenes/chemistry , Computer Simulation , Models, Molecular , Molecular Conformation
16.
Phys Chem Chem Phys ; 10(19): 2611-5, 2008 May 21.
Article in English | MEDLINE | ID: mdl-18464975

ABSTRACT

A parameter-free DFT/CCSD(T) correction scheme is proposed for precise calculations (close to CCSD(T) accuracy) of weakly bound molecular solids. The correction scheme has been tested for solid benzene and graphite. The CCSD(T)/CBS correction to planewave DFT calculations reproduces the experimentally determined lattice constants for solid benzene. The calculated cohesive energy of benzene (457 meV per molecule) compares well with the experimental values of the heat of sublimation (460-560 meV per molecule). For graphite, the correction yields structural parameters (a = 2.46 A, c = 6.60 A) in good agreement with experiment (a = 2.46 A, c = 6.67 A). The calculated exfoliation energy of 54 meV per atom agrees fairly well with the most recent experimental value of 52 +/- 5 meV per atom.

17.
J Chem Phys ; 128(11): 114102, 2008 Mar 21.
Article in English | MEDLINE | ID: mdl-18361549

ABSTRACT

A novel method, designated as the density functional theory/coupled-cluster with single and double and perturbative triple excitation [DFT/CCSD(T)] correction scheme, was developed for precise calculations of weakly interacting sp(2) hydrocarbon molecules and applied to the benzene dimer. The DFT/CCSD(T) interaction energies are in excellent agreement with the estimated CCSD(T)/complete basis set interaction energies. The tilted T-shaped structure having C(s) symmetry was determined to be a global minimum on the benzene-dimer potential energy surface (PES), approximately 0.1 kcal/mol more stable than the parallel-displaced structure. A fully optimized set of ten stationary points on the benzene-dimer PES is proposed for the evaluation of the reliability of methods for the description of weakly interacting systems.


Subject(s)
Benzene/chemistry , Thermodynamics , Computer Simulation , Dimerization , Models, Chemical , Models, Molecular , Quantum Theory
18.
Phys Chem Chem Phys ; 8(47): 5535-42, 2006 Dec 21.
Article in English | MEDLINE | ID: mdl-17136268

ABSTRACT

The preferred Cu(+) sites and formation of mono-, di-, and tricarbonyl complexes in the Cu-FER were investigated at the periodic density functional theory level and by means of FTIR spectroscopy. The site-specificity of adsorption enthalpies of CO on Cu-FER and of vibrational frequencies of polycarbonyl complexes were investigated for various Cu(+) sites in Cu-FER. Large changes in the Cu(+) interaction with the zeolite framework were observed upon the formation of carbonyl complexes. The dicarbonyl complexes formed on Cu(+) in the main channel or on the intersection of the main and perpendicular channels are stable and both, adsorption enthalpies and CO stretching frequencies are not site-specific. The fraction of Cu(+) ions in the FER cage, that cannot form dicarbonyl can be determined from IR spectra (about 7% for the Cu-FER with Si/Al = 27.5 investigated here). The tricarbonyl complexes can be formed at the Cu(+) ions located at the 8-member ring window at the intersection of main and perpendicular channel. The stability of tricarbonyl complexes is very low (DeltaH degrees (0 K)>or=-4 kJ mol(-1)).


Subject(s)
Copper/chemistry , Ion Channels , Models, Molecular , Organometallic Compounds/chemistry , Polycarboxylate Cement/chemistry , Zeolites/chemistry , Carbon Monoxide/chemistry , Models, Chemical , Molecular Conformation , Spectroscopy, Fourier Transform Infrared , Thermodynamics
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