Bio-SELEX: A Strategy for Biomarkers Isolation Directly from Biological Samples.

Bio-SELEX is a revolutionary method for the discovery of novel biomarkers within biological samples, offering profound insights into diagnosing both infectious and non-infectious diseases. This innovative strategy involves three crucial steps: Traditional SELEX, Pull Down, and mass spectrometry. Firstly, Traditional SELEX involves the systematic selection of specific nucleic acid sequences (aptamers) that bind to the target molecules of interest. These aptamers are generated through iterative rounds of selection, amplification, and enrichment, ultimately yielding highly selective ligands. Secondly, the Pull-Down phase employs these aptamers to capture and isolate the target biomarkers from complex biological samples. This step ensures the specificity of the selected aptamers in binding to their intended targets. Lastly, mass spectrometry is utilized to identify and quantify the captured biomarkers, providing precise information about their presence and concentration in the sample. These quantitative data are invaluable in disease diagnosis and monitoring. Bio-SELEX's significance lies in its ability to discover biomarkers for a wide range of diseases, spanning infectious and non-infectious conditions. This approach holds great promise for early disease detection, personalized medicine, and the development of targeted therapies. By harnessing the power of aptamers and mass spectrometry, Bio-SELEX advances our understanding of disease biology and opens new avenues for improved healthcare.

Biomarkers for the diagnosis, treatment follow-up, and prediction of cardiac complications in Chagas disease in chronic phase: Recent advances.

Chagas disease is caused by the Trypanosoma cruzi parasite and is transmitted by infected triatomine bugs. This infection affects approximately 8 million people in the Americas, and due to globalisation and displacement, it is becoming increasingly common to find infected patients worldwide. Diagnosis of the disease in its acute form is relatively simple, as the parasite can be detected in peripheral blood smears, and symptoms are visible. However, in its chronic condition, the parasite is almost undetectable, and indirect tests are necessary to determine the presence of antibodies in infected patients. It is important to note that a single test is not enough to confirm the disease in this phase, as a second serological test should confirm the diagnosis. If the results are contradictory, a third test should be performed to confirm or discard the disease. Unfortunately, laboratories may not have access to all necessary tests in many rural areas where the disease is more frequent. Rapid tests to diagnose this disease present problems, such as significant variations in sensitivity and specificity in different countries. Therefore, searching for new biomarkers that allow for optimal correlation is essential. In this work, we have searched scientific literature from the last 10 years for mentions of novel biomarkers for diagnosis, treatment follow-up, and prediction of cardiac complications in Chagas disease in its chronic phase.

Immunoproteomics characterization of Leishmania panamensis proteins for potential clinical diagnosis of mucosal Leishmaniasis.

Diagnosis of leishmaniasis based on antibodies detection represents a challenge due to cross-reaction of sera with other infectious agents, which co-exist in endemic areas of Leishmania sp, especially patients with Trypanosoma cruzi. This work is aimed at searching for immunogenic proteins in sera from patients with cutaneous and mucosal leishmaniasis that may be potential candidates for the development of diagnostic tests and/or vaccines that help control the infection. Total protein extracts of L. panamensis promastigotes were put in contact with sera from patients with cutaneous and mucosal leishmaniasis (immunoblots). Immunoreactive proteins were identified by mass spectrometry and bioinformatics tools. 81 proteins were identified. One of these was uniquely recognized by the sera from patients with ML but not from sera from either CL or Chagas disease patients. MS analysis of this band pointed to the putative leishmanial 3-oxoacyl-(Acylcarrierprotein) reductase.

Current Advances in the Development of Diagnostic Tests based on Aptamers in Parasitology: A Systematic Review.

Aptamers are single-stranded DNA or RNA sequences of 20-80 nucleotides that interact with different targets such as: proteins, ions, viruses, or toxins, through non-covalent interactions and their unique three-dimensional conformation. They are obtained in vitro by the systematic evolution of ligands by exponential enrichment (SELEX). Because of their ability of target recognition with high specificity and affinity, aptamers are usually compared to antibodies. However, they present many advantages that make them promising molecules for the development of new methods for the diagnosis and treatment of human diseases. In medical parasitology, aptamers also represent an attractive alternative for the implementation of new parasite detection methods, easy to apply in endemic regions. The aim of this study was to describe the current advances in the development of diagnostic tests based on aptamers in parasitology. For this, articles were selected following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, with specific inclusion and exclusion criteria. The 26 resulting articles deal with the use of aptamers for the detection of six important protozoa that affect human health. This systematic review clearly demonstrates the specificity, sensitivity and selectivity of aptamers and aptasensors, that certainly will soon become standard methods in medical parasitology.

Diagnosis of human and canine Brucella canis infection: development and evaluation of indirect enzyme-linked immunosorbent assays using recombinant Brucella proteins.

Brucella canis, a Gram-negative coccobacilli belonging to the genus Brucellae, is a pathogenic bacterium that can produce infections in dogs and humans. Multiple studies have been carried out to develop diagnostic techniques to detect all zoonotic Brucellae. Diagnosis of Brucella canis infection is challenging due to the lack of highly specific and sensitive diagnostic assays. This work was divided in two phases: in the first one, were identified antigenic proteins in B. canis that could potentially be used for serological diagnosis of brucellosis. Human sera positive for canine brucellosis infection was used to recognize immunoreactive proteins that were then identified by performing 2D-GEL and immunoblot assays. These spots were analyzed using MALDI TOF MS and predicted proteins were identified. Of the 35 protein spots analyzed, 14 proteins were identified and subsequently characterized using bioinformatics, two of this were selected for the next phase. In the second phase, we developed and validated an indirect enzyme-linked immunosorbent assays using those recombinant proteins: inosine 5' phosphate dehydrogenase, pyruvate dehydrogenase E1 subunit beta (PdhB) and elongation factor Tu (Tuf). These genes were PCR-amplified from genomic DNA of B. canis strain Oliveri, cloned, and expressed in Escherichia coli. Recombinant proteins were purified by metal affinity chromatography, and used as antigens in indirect ELISA. Serum samples from healthy and B. canis-infected humans and dogs were used to evaluate the performance of indirect ELISAs. Our results suggest that PdhB and Tuf proteins could be used as antigens for serologic detection of B. canis infection in humans, but not in dogs. The use of recombinant antigens in iELISA assays to detect B. canis-specific antibodies in human serum could be a valuable tool to improve diagnosis of human brucellosis caused by B. canis.

Presencia de Salmonella spp. en tortugas de río en cautiverio y en libertad en Urabá, Colombia / Presence of Salmonella spp in captivity and wild river turtles in Urabá, Colombia / Presença de Salmonella spp. em tartarugas de rio em cativeiro e em liberdade em Urabá, Colômbia

Resumen La salmonelosis es una enfermedad infecciosa de alta prevalencia a nivel mundial en la cual las tortugas han sido reconocidas como portadores crónicos. Diferentes estudios han reportado la presencia de Salmonella spp. en tortugas de río en diferentes países, sin embargo, ha sido poco reportada en individuos en libertad. El objetivo de este estudio fue determinar la presencia de Salmonella spp. en tortugas de río en cautiverio (n= 55) y en libertad (n= 50) en el Urabá antioqueño (Colombia) entre 2015-2016. Se incluyeron las especies Trachemys venusta, Rhinoclemmys melanosterna y Kinosternon leucostomum. Se tomó la muestra de materia fecal por hisopado cloacal, se cultivó y de las colonias aisladas se realizó extracción de ADN y reacción en cadena de polimerasa (PCR). De la población muestreada (n=105) se encontraron dos individuos positivos a Salmonella spp., ambos en cautiverio, machos, adultos y pertenecientes a la especie R. melanosterna. Los resultados obtenidos no excluyen la posibilidad de infección debido a la intermitencia en la excreción de la bacteria en heces. Esta investigación aporta evidencia a la presencia de la bacteria en las tortugas de la región de estudio y la necesidad de implementar medidas preventivas que disminuyan el contacto con estas especies, y por lo tanto la probabilidad de transmisión de salmonelosis no tifoidea en la población humana de la región.

Abstract Salmonellosis is a high prevalence infectious diseases worldwide and turties have been recognized as chronic carriers. Studies have reported the presence of Salmonella spp in river turtles in different countries; however, studies in wild individuals are less common. The objective of this study was to identify the presence of Salmonella spp in wild (n=50) and in captivity (n=55) river turtles in Uraba Antioqueño (Colombia) between 201 5-2016. Trachemys venusta, Rhinoclemmys melanosterna, and Kinosternon leucosto-mum were included. Feces samples were taken by cloaca swab׳ cultures were performed, and DNA extraction and PCR were made from the colonies isolated. From total population(n=105) two male, adults in captivity were positive, the specie was R. melanosterna. The results obtained do not exclude infection due to the intermittence in the excretion of the bacteria in feces. This research provides evidence of the presence of the bacteria in turtles from the region and highlights the requirement to implement preventive activities to reduce contact with these species, and decrease the probability of transmission of nontyphoidal salmonellosis in human population around the region.

Resumo Salmonelose é uma doença de alta prevalência mundial. As tartarugas são reconhecidas como portadoras crônicas. Em diferentes países tem sido relatado a presença de Salmonella spp. em tartarugas de rios embora, poucos são os estudos em indivíduos selvagens. O objetivo deste estudo foi identificar na região do Urabá Antioqueño (Colombia) nos anos 2015 e 2016 a presença de Salmonella spp. em tartarugas selvagens (n = 50) e em cativeiro (n = 55). Foram incluídas tartarugas das espécies Trachemys venusta, Rhinoclemmys melanosterna e Kinosternon leucostomum. Foi coletada por esfregaço cloacal e para cultura uma amostra de fezes. A partir das colônias isoladas foi realizada extração de DNA para testes moleculares (PCR). Da população total (n = 105) foram positivos do grupo de cativeiro dois machos adultos da espécie R. melanosterna. Devido à intermitência na excreção das bactérias nas fezes os resultados obtidos não excluem a infecção. Esta pesquisa fornece evidências da presença da bactéria em tartarugas da região do Urabá e destaca a necessidade de implementar atividades preventivas para reduzir o contato com essas espécies selvagens e diminuir a probabilidade de transmissão zoonótica de salmonelose não tifoidal na população humana da região.

Detection of Salmonella human carriers in Colombian outbreak areas.

INTRODUCTION: Salmonellosis, a zoonotic and foodborne disease, is a public health problem in developing countries. With the aim of identifying human carriers of Salmonella, a survey was performed in five regions of Colombia with reported salmonellosis outbreaks. METHODOLOGY: The general population and cholecystectomy surgical patients were included in this study. Stool samples from 667 volunteers and gallbladder bile samples from 199 surgical patients were examined. Detection of Salmonella from cultured stool and bile samples was determined by polymerase chain reaction (PCR). Multiplex PCR and biochemical and serological tests were performed to identify the serovars of the isolates. RESULTS: Nine (1.35%) stool samples were positive for Salmonella: two S. Newport, two S. Anatum, one S. Sinstorf, and four Salmonella spp. A total of 11 gallbladder bile samples were positive: S. Enteritidis was isolated from 3 bile cultures (1.5%), and 8 samples (4%) were positive for Salmonella spp. CONCLUSIONS: Our results show the presence of Salmonella carriers in the inhabitants of regions with reported outbreaks and suggest that these carriers are potential sources of infection in endemic and epidemic cases. Carriers also suggest Salmonella zoonotic transmission, since broiler and beef cattle are hosts to the Salmonella serotypes isolated. It is important to establish the source of infection in regions where salmonellosis is endemic in order to control transmission.

Gallbladder microbiota variability in Colombian gallstones patients.

INTRODUCTION: Gallbladder stones are a very frequently occurring condition. Despite bile bactericidal activity, many bacteria have been detected inside the gallbladder, and gallstones facilitate their presence. Between 3% and 5% of the patients with Salmonella spp. infection develop the carrier stage, with the bacteria persisting inside the gallbladder, shedding bacteria in their feces without signs of infection. The aim of this study was to isolate bacteria from Colombian patients with gallstones, using standard culturing methods, and to identify Salmonella spp. carriers by molecular techniques. METHODOLOGY: A total of 149 patients (120 female and 29 male) diagnosed with gallstones who underwent cholecystectomy and who did not have symptoms of acute inflammation were included. Gallbladder tissue and bile were cultured and used for DNA extraction and Salmonella spp. hilA gene detection. RESULTS: Of the 149 patients 28 (19%) had positive cultures. Twenty-one (75%) patients with positive cultures were from Medellin's metropolitan area. In this geographical location, the most frequent isolations were Pseudomonas spp. (38%), Klebsiella spp. (23%), and Proteus spp. (9%) in addition to unique cases of other bacteria. In Apartado, the isolates found were Enterobacter cloacae (50%), Raoultella terrigena (32%), and both Enterobacter cloacae and Raoultella terrigena were isolated in one (18%) male patient. Five (3.3%) of the 149 patients had positive polymerase chain reaction (PCR) results for the hilA gene of Salmonella spp., all of whom were female and residents of the Medellín metropolitan area. CONCLUSIONS: The gallbladder microbiota variability found could be related to geographical, ethnic, and environmental conditions.

Comparison of Brucella canis genomes isolated from different countries shows multiple variable regions.

Brucella canis is a pathogenic bacterium for dogs and its zoonotic potential has been increasing in recent years. In this study, we report the sequencing, annotation and analysis of the genome of Brucella canis strain Oliveri isolated from a dog in a breeding kennel in Medellín, Colombia, South America. Whole genome shotgun sequencing was carried out using the ROCHE 454 GS FLX Titanium technology at the National Center for Genomic Sequencing-CNSG in Medellin, Colombia. The assembly procedure was performed using Newbler v2.6. In the genome annotation process, each contig was analyzed independently using as reference Brucella suis ATCC 1330 chromosomes. This new genome could be useful for the development of diagnostic tools and for vaccines search as well, in order to reduce the health impact of this infection in both, dogs and humans. The sequence was deposited in EMBL-EBI with accession numbers HG803175 and HG803176 for chromosomes 1 and 2, respectively.

Infección por Brucella canis en humanos: propuesta de un modelo teórico de infección a través de la ruta oral / Brucella canis infection in humans: Proposal of a theoretical model of infection through the oral route

La infección por Brucella canis en los humanos se ha reconocido recientemente como una zoonosis, pero frecuentemente es sub reportada debido a que los síntomas pueden confundirse con los de un resfriado común u otras infecciones causadas por otros patógenos. Los caninos son los hospederos primarios de Brucella canis ; el incremento en la tendencia de tener perros como mascotas podría también aumentar la posibilidad de transmisión de la infección a los humanos por el estrecho contacto entre la mascota infectada y su propietario. En Colombia, hay reportes de aislamientos de B. canis de caninos de criaderos y de un humano en contacto con perros infectados, al igual que reportes de caninos seropositivos a la infección. Sin embargo, no hay mucha información disponible sobre los mecanismos de interacción hospedero-patógeno que conduzcan al establecimiento de la infección por Brucella canis en perros y en humanos esta información es todavía menor. En esta revisión se propone un modelo para la infección humana con Brucella canis a través de la ruta oral utilizando la información disponible para otras especies de Brucella que infectan al humano, incluyendo B. abortu s y B. melitensis , que difieren de B. canis en la composición estructural de su lipopolisacárido. También se hipotetiza el mecanismo de infección celular que es usado por B. canis para invadir y establecer la infección en células no fagocíticas y fagocíticas.

Brucella canis infection in humans has recently been recognized as a zoonosis, but it is frequently under reported because the flu-like symptoms are often confused with the presence of other disease-causing pathogens. Dogs are the primary hosts for Brucella canis ; the increasing trend to adopt dogs as pets also enhances the likelihood of transmission of Brucella canis infection through contact between infected dogs and owners. In Colombia, there are reports of isolates of B. canis from kennel dogs and also from one human being along with seropositive results from dogs and humans. However, the mechanism of hostpathogen interactions leading to the infection of Brucella canis in dogs is still unknown and even less is known about human infections. This review proposes a model for human infection with Brucella canis through the oral route. We use the information available for other human-infecting Brucella species, including B. abortu s and B. melitensis, which differ from B. canis in the structural composition of the lipopolysaccharide molecule. The mechanism of cellular infection used by B. canis to invade and establish infection in nonphagocytic and phagocytic cells is also hypothesized.

[Factors associated with Brucella canis seropositivity in kennels of two regions of Antioquia, Colombia]. / Factores asociados con la seropositividad a Brucella canis en criaderos caninos de dos regiones de Antioquia, Colombia.

The objectives of this study were to determine Brucella canis seroprevalence in dogs and in humans living near kennels and to explore risk factors associated with seropositivity. Twenty kennels were included in a serological survey with RSAT-2ME, and samples were collected from 428 dogs and 91 humans. An interview was applied to determine risk factors, and the data were analyzed using logistic regression. Seroprevalence was 15% in dogs and 9% in humans. Factors associated with current canine seropositivity were: history of canine seropositivity, non-culling of seropositive dogs, history of abortion, poor hygiene and personal protection during reproductive service, and unsafe procedures during care for abortions. Protective factors included: rural location of kennels, ease of cleaning kennels, pre-mating RSAT-2ME, and safe procedures during care for delivery. Factors associated with seropositive status in humans were: kennels located in Valle de Aburrá and urban location.

Factores asociados con la seropositividad a Brucella canis en criaderos caninos de dos regiones de Antioquia, Colombia / Factors associated with Brucella canis seropositivity in kennels of two regions of Antioquia, Colombia / Fatores associados à soropositividade por Brucella canis em cães reprodutores em duas regiões no Estado de Antioquia, Colômbia

El objetivo fue determinar la seroprevalencia a Brucella canis en perros y humanos convivientes en criaderos caninos y explorar los factores de riesgo asociados a la seropositividad. Se tomaron 20 criaderos, en los cuales se realizó diagnóstico serológico por PARP-2ME de 428 caninos y 91 humanos. Se aplicó una encuesta para determinar los factores de riesgo y se analizaron los datos mediante regresión logística. Se determinó una seroprevalencia de 15% en caninos y 9% en humanos convivientes. Se determinaron como factores asociados a la seropositividad canina el historial de seropositividad canina, conservar los caninos seropositivos, historial de aborto, higiene y protección del operario deficientes durante el servicio reproductivo, y procedimiento inseguro durante la atención de abortos. Como factores protectores se establecieron la ubicación rural de los criaderos, facilidad de aseo de los caniles, PARP-2ME premonta, y procedimiento seguro durante la atención de partos. En humanos se determinaron factores asociados: criaderos ubicados en el Valle Aburrá y de tipo urbano.

The objectives of this study were to determine Brucella canis seroprevalence in dogs and in humans living near kennels and to explore risk factors associated with seropositivity. Twenty kennels were included in a serological survey with RSAT-2ME, and samples were collected from 428 dogs and 91 humans. An interview was applied to determine risk factors, and the data were analyzed using logistic regression. Seroprevalence was 15% in dogs and 9% in humans. Factors associated with current canine seropositivity were: history of canine seropositivity, non-culling of seropositive dogs, history of abortion, poor hygiene and personal protection during reproductive service, and unsafe procedures during care for abortions. Protective factors included: rural location of kennels, ease of cleaning kennels, pre-mating RSAT-2ME, and safe procedures during care for delivery. Factors associated with seropositive status in humans were: kennels located in Valle de Aburrá and urban location.

O objetivo desta pesquisa foi determinar a soroprevalência de brucelose dada por Brucella canis na população canina e os seres humanos que moram junto com os cães reprodutores, e explorar os fatores de risco associados à soropositividade.Vinte cães foram amostrados, nestes se fez o diagnóstico sorológico por PARP-2ME para 428 caninos e 91 pessoas. Para o estudo de fatores de risco associados à doença foi realizada uma análise por regressão logística. Encontrou-se uma soroprevalência de 15% e 9% nos caninos e humanos, respectivamente. Foram identificados como fatores de risco associados à soropositividade canina nos canis avaliados a história clínica com antigos diagnósticos de abortos e de soropositividade, conservar caninos que sejam soropositivos, a má higiene no canil e uma indumentária laboral insuficiente para o trabalhador que mexe com os cães, tanto durante o serviço reprodutivo quanto na atenção de abortos que possam ser inseguros. Encontraram-se como fatores de proteção nesta pesquisa as regiões rurais onde estava a incubadora, a facilidade de limpeza que possibilita uma melhor higiene dos canis, PARP-2ME pré-nupcial e procedimento seguro durante o parto. Em humanos foram determinados como fatores associados: criadores localizados no Valle Aburrá e do tipo urbano.

Diseño y evaluación de una prueba de PCR para detección de Brucella spp. y Brucella abortus / Design and evaluation of a PCR test for detection of Brucella spp. and Brucella abortus / Desenho e avaliação de um teste de PCR para a detecção de Brucella spp. e Brucella abortus

Resumen Problema: el diagnóstico oportuno de la brucelosis, zoonosis que afecta ganado y trabajadores pecuarios, es difícil. Las pruebas serológicas Rosa de Bengala y ELISA, el hemocultivo y mielocultivo, tienen sensibilidades entre 15-70% dependiendo del estadío de la infección. El desarrollo de métodos diagnósticos rápidos, sensibles y específicos utilizando técnicas moleculares como la PCR, permite diagnosticar y tratar oportunamente esta enfermedad. Objetivo: Desarrollar y evaluar dos pruebas de PCR para detección de Brucella spp. y B. abortus. Materiales y métodos: se diseñaron y evaluaron iniciadores para detectar el gen ugpA utilizando Primer3, y otros reportados en la literatura. Se calculó sensibilidad y especificidad, usando 3 grupos (G) de muestras humanas y bovinas utilizando el teorema de Bayes: G1:30 muestras de suero y 30 de sangre de humanos sanos y 30 de suero y 30 de sangre de bovinos sanos, inoculadas con Brucella abortus; G2: 30 muestras de suero y 30 de sangre de humanos sanos y 30 de suero y de 30 sangre de bovinos sanos inoculadas con Salmonella Typhi, Escherichia coli, Klebsiella sp., Psudomonas aeruginosa, Staphylococcus aureus, Streptococcus pneumoniae y Enterococcus sp. G3: 60 muestras de suero y 60 sangre de bovinos y 60 muestras de suero y 60 sangre de humanos asintomáticos. Resultados: se obtuvo una sensibilidad y especificidad de detección de Brucella sp. y Brucella abortus del 100% en muestras humanas y bovinas. Conclusiones: por la alta sensibilidad y especificidad encontradas en las pruebas de PCR estudiadas, se recomienda continuar un estudio clínico de aplicación para evaluar su comportamiento en muestras de pacientes y animales infectados.

Abstract Problem: brucelosis is a zoonosis that affects livestock and livestock workers. This disease is characterized by the difficulties for its early diagnosis. Sensitivity of marrow and blood cultures as well as serological tests (Rose Bengal and ELISA) ranges between 15 and 70%, depending on the stage of infection. Development of rapid, sensitive, and specific diagnostic methods using molecular techniques such as PCR would allow timely diagnose and treatment of the disease. Objective: To develop and evaluate two PCR tests for detection of Brucella spp. and B. abortus. Materials and methods: primers to detect ugpA gene were designed and evaluated using Primer3 and others reported in the literature. Sensitivity and specificity were calculated for 3 groups (G) of human and bovine samples using Bayes' theorem. G1 consisted of healthy human and healthy bovine samples (30 serum and 30 blood samples of each species); bovine blood samples were inoculated with Brucella abortus. G2 consisted of healthy human and healthy bovine samples (30 serum and 30 blood samples of each); bovine blood samples were inoculated with Salmonella typhi, Escherichia coli, Klebsiella sp., Pseudomonas aeruginosa, Staphylococcus aureus, Streptococcus pneumonia, and Enterococcus sp. G3 consisted of 60 serum and 60 blood samples from asymptomatic bovines, as well as 60 serum and 60 blood samples from asymptomatic humans. Results: sensitivity and specificity of the PCR test to detect Brucella sp. and Brucella abortus reached 100% in human and bovine samples. Conclusiones: considering the high sensitivity and specificity observed in the PCR tests studied, we recommend doing a follow up of the test in a clinical trial to evaluate its performance in infected humans and animals.

Resumo Problema: é difícil o diagnostico oportuno da brucelose, zoonose que afeta o gado e os trabalhadores pecuários. Os testes serológicos Rosa de Bengala e ELISA, e a hemocultura e mielocultura têm sensibilidades entre 15 e 70% dependendo do estádio da infecção. O desenvolvimento de métodos diagnósticos rápidos, sensíveis e específicos utilizando técnicas moleculares como a PCR, permite diagnosticar e tratar oportunamente esta doença. Objetivo: desenvolver e avaliar dois testes de PCR para a detecção de Brucella spp. e B. abortus. Materiais e métodos. Desenharam-se e avaliaram-se iniciadores utilizando o software Primer3 para detectar o gene ugpA, também se avaliaram outros iniciadores reportados previamente na literatura. Calculou-se a sensibilidade e especificidade do teste por PCR usando três grupos (G) de amostras humanas e bovinas utilizando o teorema de Bayes: G1: 30 amostras de soro e 30 de sangue de humanos sãos e 30 de soro e 30 de sangue de bovinos sãos, inoculadas com Brucella abortus; G2: 30 amostras de soro e 30 de sangue de humanos sãos e 30 de soro e de 30 sangue de bovinos sãos inoculadas com Salmonella Typhi, Escherichia coli, Klebsiella sp., Psudomonas aeruginosa, Staphylococcus aureus, Streptococcus pneumoniae e Enterococcus sp. G3: 60 amostras de soro e 60 de sangue de bovinos e 60 amostras de soro e 60 sangue de humanos assintomáticos. Resultados. Obteve-se uma sensibilidade e especificidade de detecção da Brucella spp. e Brucella abortus de 100% em amostras humanas e bovinas. Conclusões: pela alta sensibilidade e especificidade encontrada com o teste de PCR estudado, recomenda-se continuar um estudo clínico de aplicação para avaliar seu comportamento em amostras de pacientes e animais infetados.

Identification of the virB operon genes encoding the type IV secretion system, in Colombian Brucella canis isolates.

Canine brucellosis is a zoonotic disease caused by Brucella canis. The establishment of intracellular replicative niches of B. canis is mediated by proteins secreted by the type IV secretion system, which is encoded by the virB operon. The characterization of such genes has been conducted in other species of the genus, but not in B. canis. We report the design of a multiplex PCR test for the detection of the virB operon genes of B. canis. Primers for each of the 12 genes were designed and evaluated using bioinformatics tools. A multiplex PCR assay was standardized and applied to 36 isolates obtained from infected dogs of Aburrá Valley kennels, as well to the Brucella abortus, Brucella melitensis, Brucella suis and Brucella ovis DNA strains. As a result of the in silico design, a pair of primers for each gene was selected. All species and isolates evaluated showed evidence of the presence of the entire virB operon.

Salmonella enterica in semi-aquatic turtles in Colombia.

INTRODUCTION: Turtles can be hosts of Salmonella enterica serovars which can cause disease both in the animals themselves and in people they come into contact with, especially when the turtles are kept as pets. To investigate the prevalence of Salmonella in turtles in Colombia, we studied animals at a wildlife protection centre. The turtles had either been confiscated or donated to the centre. METHODOLOGY: Detection of Salmonella spp. was conducted in feces samples using bacteriological cultures and polymerase chain reaction to identify genus and serovar.  RESULTS: By PCR and culture, 30/110 samples (27%) were positive while by PCR alone eight further samples were positive (total of 38/110 (35%) positive). The most common serovar was S. Enteritidis (26/38 (68%) with only one isolate being S. Typhimurium (3%).  Four (11%) samples were positive for both serovars and seven (18%) could only be identified as Salmonella enterica spp. CONCLUSIONS: These results show that turtles in Colombia are commonly infected with Salmonella and are a risk for infection to people who come into contact with them.

Distribution of pathogenicity islands among Colombian isolates of Salmonella.

INTRODUCTION: Salmonella pathogenicity islands (SPIs) are regions scattered along the bacterial chromosome, with an acknowledged pivotal role during gastrointestinal and systemic infection. The distribution of SPIs has been investigated in reference strains. However, there is a lack of studies on their presence and/or assortment within the genomes of Salmonella enterica (S. enterica) serovars that circulate in different geographical regions. Therefore, in this study, we aimed to determine the presence of genes of the pathogenicity islands 1 to 5 (SPI-1 to 5), in Salmonella clinical isolates from Colombian patients with systemic and enteric outcomes. METHODOLOGY: A total of 125 strains of S. enterica belonging to different serovars were isolated from various clinical samples. Strains were identified and screened for the presence of various genes located in pathogenicity islands. The genes tested were selected according to the attributed pathogenic function and detected by PCR for the SPI-1 hilA and invA; for SPI-2 spiC and ttrC; for SPI-3 misL and mgtC; for SPI-4 orfL and SPI-4R; and for SPI-5 pipD and sopB. RESULTS: Salmonella pathogenicity islands 1 to 5 were detected in isolates from patients with systemic and gastrointestinal infection. All the systemic isolates possessed all the genes tested; in contrast, 16 isolates from stool samples lacked one or more sequences encoded by the SPI-3 and SPI-4 (p < 0.000001). CONCLUSIONS: These results describe the heterogeneous distribution of SPIs-encoded sequences within the genomes of Colombian clinical isolates, and reveal important differences among systemic and stool sample isolates.

[Characterization of two typhoid fever outbreaks in Apartadó, Antioquia, 2005]. / Caracterización de dos brotes de fiebre tifoidea en Apartadó, Antioquia, 2005.

INTRODUCTION: The characterization of typhoid fever outbreaks is important because it is necessary to find the source of the infection and development control measures. OBJECTIVE: A typhoid fever outbreak is described from Apartadó and the Salmonella Typhi isolates characterized by phenotypic and genotypic methods. MATERIALS AND METHODS: From 44 patients, 15 blood cultures and 7 stools cultures were recovered. Phenotypic identification of isolates was done by biochemical and serological tests, and antibiotic susceptibility was tested. Genes hilA, invA and the IS200 marker were evaluated by polymerase chain reaction; pulsed field gel electrophoresis was used for the XbaI gene. Eight water samples were examined by polymerase chain reaction and culture methods in order to isolate Salmonella spp. RESULTS: Fifteen patients were confirmed for typhoid fever, 13 by blood cultures and two by stools cultures. All S. Typhi isolates were susceptible to the antimicrobials tested. The presence of hilA, invA and IS200 were confirmed by polymerase chain reaction in all isolates. The pulsed field gel electrophoresis method grouped 10 isolates in COINJPP.X01.0035 pattern, three in COINJPPX01.0002, one in COINJPP.X01.0012 and one in COINJPPX01.0037. Water isolates were negatives for Salmonella spp. CONCLUSIONS: Pulsed field gel electrophoresis discriminated the isolates in two outbreaks. Initially the cases were described as only one outbreak, by epidemiological criteria and phenotypic test. Additionally two isolates with different clonal origin were discriminated, indicating that they were unrelated to the other cases. It was not possible to confirm the infection source from water samples.

Caracterización de dos brotes de fiebre tifoidea en Apartadó, Antioquia, 2005 / Characterization of two typhoid fever outbreaks in Apartadó, Antioquia, 2005

Introducción. La caracterización de los brotes de fiebre tifoidea es importante epidemiológicamente, debido a que esto permite la búsqueda de la fuente y el desarrollo de medidas de control. Objetivo. Describir un brote de fiebre tifoidea en el municipio de Apartadó y caracterizar fenotípica y genotípicamente los aislamientos de Salmonella Typhi relacionados con él. Materiales y métodos. Se estudiaron 44 pacientes, a 15 de ellos se les tomaron muestras para hemocultivos y a 7, muestras para coprocultivos. Los aislamientos bacterianos se estudiaron con pruebas bioquímicas y serotipificación y se determinó el perfil de susceptibilidad a antibióticos. Los aislamientos se evaluaron fenotípicamente por reacción en cadena de la polimerasa para los genes hilA, invA e IS- 200, y por electroforesis en campo pulsado con XbaI. Se estudiaron ocho muestras de agua asociadas al brote por reacción en cadena de la polimerasa y cultivo para la búsqueda de Salmonella. Resultados. A 15/44 pacientes se les confirmó el diagnóstico clínico de fiebre tifoidea, a 13 por hemocultivos y a 2 por coprocultivos positivos para S. Typhi. Todos los aislamientos de S. Typhi fueron sensibles a los antibióticos probados. La reacción en cadena de la polimerasa confirmó la presencia de los genes hilA y invA e IS-200 en todos los aislamientos estudiados. La electroforesis en campo pulsado agrupó 10 aislamientos en el patrón COINJPP.X01.0035, tres en el patrón COINJPPX01.0002, uno COINJPP.X01.0012 y uno COINJPPX01.0037. El estudio de aguas fue negativo para Salmonella spp. Conclusiones. La electroforesis en campo pulsado estableció la presencia de dos brotes, que inicialmente, por epidemiología y pruebas fenotípicas del patógeno, habían sido descritos como uno solo. Además, permitió diferenciar dos aislamientos de origen clonal diferente, que indicaron casos aislados. No se pudo corroborar la fuente de infección en el agua.

Introduction. The characterization of typhoid fever outbreaks is important because it is necessary to find the source of the infection and development control measures. Objective. A typhoid fever outbreak is described from Apartadó and the Salmonella Typhi isolates characterized by phenotypic and genotypic methods. Materials and methods. From 44 patients, 15 blood cultures and 7 stools cultures were recovered. Phenotypic identification of isolates was done by biochemical and serological tests, and antibiotic susceptibility was tested. Genes hilA, invA and the IS200 marker were evaluated by polymerase chain reaction; pulsed field gel electrophoresis was used for the XbaI gene. Eight water samples were examined by polymerase chain reaction and culture methods in order to isolate Salmonella spp. Results. Fifteen patients were confirmed for typhoid fever, 13 by blood cultures and two by stools cultures. All S. Typhi isolates were susceptible to the antimicrobials tested. The presence of hilA, invA and IS200 were confirmed by polymerase chain reaction in all isolates. The pulsed field gel electrophoresis method grouped 10 isolates in COINJPP.X01.0035 pattern, three in COINJPPX01.0002, one in COINJPP.X01.0012 and one in COINJPPX01.0037. Water isolates were negatives for Salmonella spp. Conclusions. Pulsed field gel electrophoresis discriminated the isolates in two outbreaks. Initially the cases were described as only one outbreak, by epidemiological criteria and phenotypic test. Additionally two isolates with different clonal origin were discriminated, indicating that they were unrelated to the other cases. It was not possible to confirm the infection source from water samples.