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1.
Pak J Biol Sci ; 16(23): 1722-9, 2013 Dec 01.
Article in English | MEDLINE | ID: mdl-24506039

ABSTRACT

Retting of jute is essentially microbiological and biochemical in nature. Community Level Physiological Profiles (CLPP) as well as genomic diversity of bacterial communities were assessed in water samples collected during pre-retting, after 1st and 2nd charges of retting. The water samples were collected from two widely cultivated jute growing locations, Sonatikari (22 degrees 41'27"N; 88 degrees 35'44"E) and Baduria (22 degrees 44'24"N; 88 degrees 47'24"E), West Bengal, India. The CLPP, expressed as net area under substrate utilization curve, was studied by carbon source utilization patterns in BIOLOG Ecoplates. Molecular diversity was studied by polymerase chain reaction followed by denaturing gradient gel electrophoresis (PCR-DGGE) of total DNA from water samples. Both between locations and stages of retting, substrate utilizations pattern were carbohydrates > carboxylic acids > polymers > amino acids > amines/amides > phenolic compounds. Differential substrate utilization pattern as well as variation in banding pattern in DGGE profiles was observed between the two locations and at different stages of retting. The variations in CLPP in different stages of retting were due to the change in bacterial communities.


Subject(s)
Bacteria/classification , Malvaceae , Textile Industry/methods , Textiles , Water Microbiology , Bacteria/genetics , Bacteria/metabolism , Ecosystem , Energy Metabolism , India , Polymerase Chain Reaction , Ribotyping/methods
2.
ISRN Org Chem ; 2012: 342738, 2012.
Article in English | MEDLINE | ID: mdl-24052841

ABSTRACT

An eco-friendly "on-water" protocol for efficient catalyst-free synthesis of the Hantzsch dihydropyridines from aryl, heteroaryl, alkyl, and vinylogous aldehydes has been developed with minimum auxiliary substances, toxic reagents, organic solvents, and disposal problems.

3.
Beilstein J Org Chem ; 6: 748-55, 2010 Sep 02.
Article in English | MEDLINE | ID: mdl-20978613

ABSTRACT

4-Aryl-4-oxoesters undergo facile reduction of both the keto and the ester groups with methanolic NaBH4 at room temperature to yield the corresponding 1-aryl-1,4-butanediols whereas 4-alkyl-4-oxoesters furnish the corresponding 1,4-butanolides via selective reduction of the keto moiety. Results of a detailed and systematic investigation of the reaction are described.

4.
J Ind Microbiol Biotechnol ; 36(2): 239-45, 2009 Feb.
Article in English | MEDLINE | ID: mdl-18956216

ABSTRACT

A combined (enzymatic and chemical) process using a Bacillus pumilus strain (DKS1), isolated from the soil, was used to degum ramie bast fibres. After 24 h of incubation with the isolated pectinolytic strain using a low-cost medium, the weight loss of the ramie fibre was found to be 25% under small scale. High activity of pectate lyase was detected in the culture supernatants; 400 kg of ramie fibres was degummed with 24% weight loss in large-scale degumming under field conditions. No cellulase activity was found. Microbial intervention followed by mild (0.1%) alkali treatment showed high percentage of weight loss from the ramie fibre. Bacterial degumming followed by chemical treatment resulted in an increase of single fibre tenacity (cN/tex) by more than 20.81% as compared to non-degummed (decorticated) fibre samples. Scanning electron micrographs (SEM) and fluorescence microscope showed that after Bacillus pumilus DKS1 treatment the surface of the decorticated ramie fibre becomes very smooth. These results indicate the process provides an economical and eco-friendly method for the small scale as well as large-scale degumming of decorticated ramie fibre. This study has great relevance to the textile as well as paper industry.


Subject(s)
Bacillus/enzymology , Boehmeria/chemistry , Boehmeria/metabolism , Polysaccharide-Lyases/metabolism , Textile Industry/methods , Textiles , Bacillus/growth & development , Bacillus/isolation & purification , Bacillus/metabolism , Biotechnology/methods , Boehmeria/ultrastructure , Culture Media , Hydrogen-Ion Concentration , Microscopy, Electron, Scanning , Microscopy, Fluorescence , Pectins/metabolism
5.
Bioresour Technol ; 99(17): 8088-94, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18445524

ABSTRACT

An extracellular pectate lyase (EC 4.2.2.2) was purified from the culture filtrate of a newly isolated Bacillus pumilus DKS1 grown in pectin containing medium. Using ion-exchange and gel filtration chromatography, this enzyme was purified and found to have a molecular weight of around 35kDa. The purified enzyme exhibited maximal activity at a temperature of 75 degrees C and pH 8.5. The presence of 1mM calcium and manganese enhanced pectate lyase activity and was strongly inhibited by zinc, nickel and EDTA. The thermal inactivation studies revealed an entropy-enthalpy compensation pattern below a critical temperature. The alkaliphilicity and high thermostability of this pectate lyase may have potential implications in fibre degumming.


Subject(s)
Bacillus/enzymology , Bacillus/isolation & purification , Extracellular Space/enzymology , Polysaccharide-Lyases/chemistry , Temperature , Bacillus/drug effects , Binding Sites , Circular Dichroism , Electrophoresis, Polyacrylamide Gel , Entropy , Enzyme Activation/drug effects , Extracellular Space/drug effects , Hydrogen-Ion Concentration , Kinetics , Metals/pharmacology , Molecular Sequence Data , Pectins/metabolism , Polysaccharide-Lyases/biosynthesis , Polysaccharide-Lyases/isolation & purification , Protein Structure, Secondary , Thermodynamics , Tryptophan
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