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1.
Healthcare (Basel) ; 12(3)2024 Jan 26.
Article in English | MEDLINE | ID: mdl-38338206

ABSTRACT

Promoting subjective well-being is a crucial challenge in aging societies. In 2022, we launched a community-based intervention trial (the Chofu-Digital-Choju Movement). This initiative centered on fostering in-person and online social connections to enhance the subjective well-being of older adults. This paper describes the study design and baseline survey. This quasi-experimental study involved community-dwelling older adults aged 65-84 years in Chofu City, Tokyo, Japan. A self-administered questionnaire was distributed to 3742 residents (1681 men and 2061 women), and a baseline survey was conducted in January 2022. We assessed subjective well-being (primary outcome); psychosocial, physical, and dietary factors; and the use of information and communication technology variables (secondary outcomes) among the participants. After the intervention involving online classes, community hubs, and community events, a 2-year follow-up survey will be conducted to evaluate the effects of the intervention, comparing the intervention group (participants) with the control group (non-participants). We received 2503 questionnaires (66.9% response rate); of these, the analysis included 2343 questionnaires (62.6% valid response rate; mean age, 74.4 (standard deviation, 5.4) years; 43.7% male). The mean subjective well-being score was 7.2 (standard deviation, 1.9). This study will contribute to the development of a prototype subjective well-being strategy for older adults.

2.
Microbes Environ ; 37(3)2022.
Article in English | MEDLINE | ID: mdl-36104169

ABSTRACT

The present study investigated the effects of the endophytic fungus, Penicillium pinophilum EU0013 on fruit phytochemical indices and essential trace elements in five tomato cultivars. In a completely randomized design, inoculated and uninoculated seedlings of tomato cultivars (Momotaro, Rodeo, Anaya, Reika, and Cherry) were raised for sixteen weeks in a greenhouse. Fruit fresh weights and root colonization by P. pinophilum were significantly higher in the Rodeo cultivar than in the other cultivars tested. Significant effects of the cultivar, inoculation, and interaction on fruit dry weights were| |observed with higher values in Anaya inoculated with P. pinophilum. Cultivar and inoculation effects were significant for ascorbic acid and soluble sugars in four cultivars, with increases being observed due to the P. pinophilum inoculation. Lycopene levels increased in Rodeo and decreased in Anaya, while ß-carotene levels increased in four cultivars due to the inoculation. Manganese concentrations were significantly increased in Cherry, while iron concentrations were increased in Reika and Cherry. Increases due to the inoculation were observed for gibberellic acids (GA1 and GA4) in Reika and Anaya, whereas decreases were detected in Cherry and Rodeo. Similar results were obtained for abscisic acids (ABA) with increases in Reika and Anaya due to the inoculation. P. pinophilum EU0013 demonstrated the ability to improve the nutritive value of tomato fruits via modulations to phytochemicals in addition to increases in Mn and Fe concentrations, particularly in Cherry and Rodeo. Cultivar responses to the P. pinophilum inoculation are a factor that need to be considered for its use in increasing fruit quality indices in tomato.


Subject(s)
Penicillium , Solanum lycopersicum , Talaromyces , Trace Elements , Fruit/microbiology , Solanum lycopersicum/microbiology , Penicillium/genetics , Phytochemicals
3.
Heliyon ; 6(4): e03806, 2020 Apr.
Article in English | MEDLINE | ID: mdl-32346639

ABSTRACT

Many researchers have proposed program visualization tools for memory management. Examples include state-of-the-art tools for C languages such as SeeC and Python Tutor (PT). However, three problems hinder the use of these and other tools: capability (P1), installability (P2), and usability (P3). (P1) Tools do not fully support dynamic memory allocation or File Input / Output (I/O) and Standard Input. (P2) Novice programmers often have difficulty installing SeeC due to its dependence on Clang and setting up an offline environment that uses PT. (P3) Revisualization of the modified source code in SeeC requires several steps. To alleviate these issues, we propose a new visualization tool called PlayVisualizerC.js (PVC.js). PVC.js, which is designed for novice C language programmers to provide solutions (S1-3) for P1-3. S1 offers complete support for dynamic memory allocation, standard I/O, and file I/O. S2 involves installation in a user web browser. This system is composed of JavaScript programs, including C language execution functions. S3 reduces the steps required for revisualization. To evaluate PVC.js, we conducted two experiments. The first experiment found that students using PVC solved a set of four programming tasks on average 1.7-times faster and with 19% more correct answers than those using SeeC. The second experiment found that PVC.js has a visualization performance equivalent to PT, and that PVC.js is more effective than existing general debugging tools for novices to understand programs in cases where the values of important variables change and the control flow is complicated.

4.
J Plant Res ; 132(4): 541-568, 2019 Jul.
Article in English | MEDLINE | ID: mdl-31165947

ABSTRACT

Soybean (Glycine max) roots establish associations with nodule-inducing rhizobia and arbuscular mycorrhizal (AM) fungi. Both rhizobia and AM fungi have been shown to affect the activity of and colonization by the other, and their interactions can be detected within host plants. Here, we report the transcription profiles of genes differentially expressed in soybean roots in the presence of rhizobial, AM, or rhizobial-AM dual symbiosis, compared with those in control (uninoculated) roots. Following inoculation, soybean plants were grown in a glasshouse for 6 weeks; thereafter their root transcriptomes were analyzed using an oligo DNA microarray. Among the four treatments, the root nodule number and host plant growth were highest in plants with dual symbiosis. We observed that the expression of 187, 441, and 548 host genes was up-regulated and 119, 1,439, and 1,298 host genes were down-regulated during rhizobial, AM, and dual symbiosis, respectively. The expression of 34 host genes was up-regulated in each of the three symbioses. These 34 genes encoded several membrane transporters, type 1 metallothionein, and transcription factors in the MYB and bHLH families. We identified 56 host genes that were specifically up-regulated during dual symbiosis. These genes encoded several nodulin proteins, phenylpropanoid metabolism-related proteins, and carbonic anhydrase. The nodulin genes up-regulated by the AM fungal colonization probably led to the observed increases in root nodule number and host plant growth. Some other nodulin genes were down-regulated specifically during AM symbiosis. Based on the results above, we suggest that the contribution of AM fungal colonization is crucial to biological N2-fixation and host growth in soybean with rhizobial-AM dual symbiosis.


Subject(s)
Glycine max/metabolism , Mycorrhizae/metabolism , Plant Roots/metabolism , Rhizobium/metabolism , Gene Expression Profiling , Gene Expression Regulation, Plant , Genes, Plant , Oligonucleotide Array Sequence Analysis , Plant Roots/microbiology , Root Nodules, Plant/metabolism , Root Nodules, Plant/microbiology , Glycine max/genetics , Symbiosis
5.
Fungal Biol ; 123(4): 318-329, 2019 04.
Article in English | MEDLINE | ID: mdl-30928040

ABSTRACT

In lichen symbiosis, polyol transfer from green algae is important for acquiring the fungal carbon source. However, the existence of polyol transporter genes and their correlation with lichenization remain unclear. Here, we report candidate polyol transporter genes selected from the genome of the lichen-forming fungus (LFF) Ramalina conduplicans. A phylogenetic analysis using characterized polyol and monosaccharide transporter proteins and hypothetical polyol transporter proteins of R. conduplicans and various ascomycetous fungi suggested that the characterized yeast' polyol transporters form multiple clades with the polyol transporter-like proteins selected from the diverse ascomycetous taxa. Thus, polyol transporter genes are widely conserved among Ascomycota, regardless of lichen-forming status. In addition, the phylogenetic clusters suggested that LFFs belonging to Lecanoromycetes have duplicated proteins in each cluster. Consequently, the number of sequences similar to characterized yeast' polyol transporters were evaluated using the genomes of 472 species or strains of Ascomycota. Among these, LFFs belonging to Lecanoromycetes had greater numbers of deduced polyol transporter proteins. Thus, various polyol transporters are conserved in Ascomycota and polyol transporter genes appear to have expanded during the evolution of Lecanoromycetes.


Subject(s)
Ascomycota/enzymology , Ascomycota/metabolism , Lichens/microbiology , Membrane Transport Proteins/genetics , Membrane Transport Proteins/metabolism , Polymers/metabolism , Ascomycota/genetics , Conserved Sequence , Phylogeny , Sequence Homology
6.
Article in English | MEDLINE | ID: mdl-30595738

ABSTRACT

In some situations, it is necessary to measure personal programming skills. For example, often students must be divided according to skill level and motivation to learn or companies recruiting employees must rank candidates by evaluating programming skills through programming tests, programming contests, etc. This process is burdensome because teachers and recruiters must prepare, implement, and evaluate a placement examination. This paper tries to predict the placement and ranking results of programming contests via machine learning without such an examination. Explanatory variables used for machine learning are classified into three categories: Psychological Scales, Programming Tasks, and Student-answered Questionnaires. The participants are university students enrolled in a Java programming class. One target variable is the placement result based on an examination by a teacher of a class and the ranking results of the programming contest. Our best classification model with a decision tree has an F-measure of 0.912, while our best ranking model with an SVM-rank has an nDCG of 0.962. In both prediction models, the best explanatory variable is from the Programming Task followed in order by Psychological Sale and Student-answered Questionnaire. Our classification model uses 9 explanatory variables, while our ranking model uses 20 explanatory variables. These include all three types of explanatory variables. The source code complexity, which is a source code metrics from Programming Task, shows best performance when the prediction uses only one explanatory variable. Contribution (1), this method can automate some of the teacher's workload, which may improve educational quality and increase the number of acceptable students in the course. Contribution (2), this paper shows the potential of using difficult-to-formulate information for an evaluation such as a Psychological Scale is demonstrated. These are the contributions and implications of this paper.

7.
Protein Pept Lett ; 21(9): 865-84, 2014.
Article in English | MEDLINE | ID: mdl-24654851

ABSTRACT

Flooding is one of the serious problems for soybean plants because it inhibits growth. Proteomic and metabolomic techniques were used to determine whether proteins and metabolites are altered in the root tips of soybeans under flooding stress. Two-day-old soybean plants were flooded for 2 days, and proteins and metabolites were extracted from root tips. Flooding-responsive proteins were identified using two-dimensional- or SDS-polyacrylamide gel electrophoresis- based proteomics techniques. Using both techniques, 172 proteins increased and 105 proteins decreased in abundance in the root tips of flood-stressed soybean. The abundance of methionine synthase, heat shock cognate protein, urease, and phosphoenol pyruvate carboxylase was significantly increased by flooding stress. Furthermore, 73 flooding-responsive metabolites were identified using capillary electrophoresis-mass spectrometry. The levels of gamma-aminobutyric acid, glycine, NADH2, and phosphoenol pyruvate were increased by flooding stress. Taken together, these results suggest that synthesis of phosphoenol pyruvate by way of oxaloacetate produced in the tricarboxylic acid cycle is activated in soybean root tips in response to flooding stress, and that flooding stress also leads to modulation of the urea cycle in the root tips.


Subject(s)
Floods , Gene Expression Regulation, Plant , Glycine max , Metabolomics , Plant Roots , Proteomics , Stress, Physiological/genetics , Electrophoresis, Polyacrylamide Gel , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Roots/genetics , Plant Roots/metabolism , Glycine max/genetics , Glycine max/metabolism
8.
Environ Sci Technol ; 47(1): 390-7, 2013 Jan 02.
Article in English | MEDLINE | ID: mdl-23194146

ABSTRACT

Laccase oxidizes iodide to molecular iodine or hypoiodous acid, both of which are easily incorporated into natural soil organic matter. In this study, iodide sorption and laccase activity in 2 types of Japanese soil were determined under various experimental conditions to evaluate possible involvement of this enzyme in the sorption of iodide. Batch sorption experiment using radioactive iodide tracer ((125)I(-)) revealed that the sorption was significantly inhibited by autoclaving (121 °C, 40 min), heat treatment (80 and 100 °C, 10 min), γ-irradiation (30 kGy), N(2) gas flushing, and addition of reducing agents and general laccase inhibitors (KCN and NaN(3)). Interestingly, very similar tendency of inhibition was observed in soil laccase activity, which was determined using 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonate) (ABTS) as a substrate. The partition coefficient (K(d): mL g(-1)) for iodide and specific activity of laccase in soils (Unit g(-1)) showed significant positive correlation in both soil samples. Addition of a bacterial laccase with an iodide-oxidizing activity to the soils strongly enhanced the sorption of iodide. Furthermore, the enzyme addition partially restored iodide sorption capacity of the autoclaved soil samples. These results suggest that microbial laccase is involved in iodide sorption on soils through the oxidation of iodide.


Subject(s)
Iodides/chemistry , Iodine/chemistry , Laccase/chemistry , Soil/chemistry , Adsorption , Alphaproteobacteria/enzymology , Benzothiazoles , Catalysis , Oxidation-Reduction , Sulfonic Acids/chemistry , Thiazoles/chemistry
9.
Microbes Environ ; 27(3): 306-15, 2012.
Article in English | MEDLINE | ID: mdl-22452844

ABSTRACT

Bradyrhizobium sp. S23321 is an oligotrophic bacterium isolated from paddy field soil. Although S23321 is phylogenetically close to Bradyrhizobium japonicum USDA110, a legume symbiont, it is unable to induce root nodules in siratro, a legume often used for testing Nod factor-dependent nodulation. The genome of S23321 is a single circular chromosome, 7,231,841 bp in length, with an average GC content of 64.3%. The genome contains 6,898 potential protein-encoding genes, one set of rRNA genes, and 45 tRNA genes. Comparison of the genome structure between S23321 and USDA110 showed strong colinearity; however, the symbiosis islands present in USDA110 were absent in S23321, whose genome lacked a chaperonin gene cluster (groELS3) for symbiosis regulation found in USDA110. A comparison of sequences around the tRNA-Val gene strongly suggested that S23321 contains an ancestral-type genome that precedes the acquisition of a symbiosis island by horizontal gene transfer. Although S23321 contains a nif (nitrogen fixation) gene cluster, the organization, homology, and phylogeny of the genes in this cluster were more similar to those of photosynthetic bradyrhizobia ORS278 and BTAi1 than to those on the symbiosis island of USDA110. In addition, we found genes encoding a complete photosynthetic system, many ABC transporters for amino acids and oligopeptides, two types (polar and lateral) of flagella, multiple respiratory chains, and a system for lignin monomer catabolism in the S23321 genome. These features suggest that S23321 is able to adapt to a wide range of environments, probably including low-nutrient conditions, with multiple survival strategies in soil and rhizosphere.


Subject(s)
Bradyrhizobium/genetics , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Genome, Bacterial , Sequence Analysis, DNA , Bacterial Proteins/genetics , Base Composition , Bradyrhizobium/isolation & purification , Bradyrhizobium/physiology , Metabolic Networks and Pathways/genetics , Molecular Sequence Data , Open Reading Frames , RNA, Untranslated/genetics , Soil Microbiology , Symbiosis , Synteny
10.
J Antibiot (Tokyo) ; 63(2): 65-70, 2010 Feb.
Article in English | MEDLINE | ID: mdl-20010796

ABSTRACT

A simple and rapid screen was performed for microorganisms producing cyclic lipopeptide acylase, an enzyme that deacylates the acyl side chain of FR901379 to yield a cyclic peptide, FR179642, which is an important intermediate in producing micafungin. Among approximately 3800 newly isolated strains from soil samples, 5 microorganisms expressing high acylase activity were selected and classified, 3 as Streptomyces spp. and 2 as filamentous fungi. This is the first time that these strains have been identified as cyclic lipopeptide acylase producers. Both fungi and streptomycetes showed differing optimum pH and temperature profiles for acylase activity.


Subject(s)
Amidohydrolases/metabolism , Fungi/enzymology , Gram-Positive Bacteria/enzymology , Peptides, Cyclic/metabolism , Antifungal Agents , Bacteriological Techniques , Echinocandins , Fungal Proteins , Hydrogen-Ion Concentration , Molecular Structure , Soil Microbiology , Substrate Specificity , Temperature
11.
J Environ Monit ; 8(1): 167-73, 2006 Jan.
Article in English | MEDLINE | ID: mdl-16395475

ABSTRACT

We developed a method to analyze atmospheric SO(x) (particulate SO(4)(2-)+ gaseous SO(2)) and NO(x) (NO + NO(2)) simultaneously using a battery-operated portable filter pack sampler. NO(x) determination using a filter pack method is new. SO(x) and NO(x) were collected on a Na(2)CO(3) filter and PTIO (2-phenyl-4,4,5,5-tetramethylimidazoline-3-oxide-1-oxyl) + TEA (triethanolamine) filters (6 piled sheets), respectively. Aqueous solutions were then used to extract pollutants trapped by the filters and the resulting extracts were pre-cleaned (e.g. elimination of PTIO) and analyzed for sulfate and nitrite by ion chromatography. Recoveries of SO(2) and NO(x) from standard pollutant gases and consistency of the field data with those from other instrumental methods were examined to evaluate our method. SO(x) and NO(x) could be analyzed accurately with determination limits of 0.2 ppbv and 1.0 ppbv (as daily average concentrations), respectively. The sampler can determine SO(x) and NO(x) concentrations at mountainous or remote sites without needing an electric power supply.


Subject(s)
Air Pollutants/analysis , Environmental Monitoring/instrumentation , Nitrogen Oxides/analysis , Sulfur Oxides/analysis , Carbonates , Cellulose , Cyclic N-Oxides , Environmental Monitoring/methods , Ethanolamines , Filtration , Humidity , Imidazoles , Quartz , Reproducibility of Results
12.
J Environ Qual ; 32(6): 1965-77, 2003.
Article in English | MEDLINE | ID: mdl-14674518

ABSTRACT

To evaluate spatial variability of nitrous oxide (N2O) emissions and to elucidate their determining factors on a field-scale basis, N2O fluxes and various soil properties were evaluated in a 100- x 100-m onion (Allium cepa L.) field. Nitrous oxide fluxes were determined by a closed chamber method from the one-hundred 10- x 10-m plots. Physical (e.g., bulk density and water content), chemical (e.g., total N and pH), and biological (e.g., microbial biomass C and N) properties were determined from surface soil samples (0-0.1 m) of each plot. Geostatistical analysis was performed to examine spatial variability of both N2O fluxes and soil properties. Multivariate analysis was also conducted to elucidate relationships between soil properties and observed fluxes. Nitrous oxide fluxes were highly variable (average 331 microg N m(-2) h(-1), CV 217%) and were log-normally distributed. Log-transformed N2O fluxes had moderate spatial dependence with a range of >75 m. High N2O fluxes were observed at sites with relatively low elevation. Multivariate analysis indicated that an organic matter factor and a pH factor of the principal component analysis were the main soil-related determining factors of log-transformed N2O fluxes. By combining multivariate analysis with geostatistics, a map of predicted N2O fluxes closely matched the spatial pattern of measured fluxes. The regression equation based on the soil properties explained 56% of the spatially structured variation of the log-transformed N2O fluxes. Site-specific management to regulate organic matter content and water status of a soil could be a promising means of reducing N2O emissions from agricultural fields.


Subject(s)
Air Pollutants/analysis , Gases/analysis , Nitrous Oxide/analysis , Soil/analysis , Air Pollutants/chemistry , Environmental Monitoring , Gases/chemistry , Greenhouse Effect , Humans , Nitrous Oxide/chemistry , Onions/metabolism
13.
Gan To Kagaku Ryoho ; 29 Suppl 3: 578-80, 2002 Dec.
Article in Japanese | MEDLINE | ID: mdl-12536853

ABSTRACT

Terumo Corporation has been supporting the regional medical network, developing new products for home health care and providing service through the Home-Joint system in the fields of HPN, HEN, and HOT. In the chain of servicing, we are carrying out call center operations that can receive inquiries regarding machine operation and machine trouble from the patients, for 24 hours a day, all year round. Most inquiries are settled then and there, but some cases need further treatment. The principal cases are, Lowness mastery degree of patients or tenders, wants of knowledge of the person in charge of answering inquiries, and coming under the medical treatment. It is indispensable to connect closely with Hospitals, the visiting nurse, and agencies. Today's Subject: Pursuit of simplicity and safety of equipment based on On-Call experience. Thorough, careful confirmation for several days from the start. Standardization of On-call information and sharing with the agency and hospital. Advancement of knowledge for answering inquiries. Making a system to cope with medical facilities.


Subject(s)
Community Networks , Continuity of Patient Care , Delivery of Health Care , Home Care Services , Home Infusion Therapy/instrumentation , Health Care Surveys , Humans
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