Morphology, behavior, and phylogenomics of Oxytoxum lohmannii, Dinoflagellata.

Dinoflagellates are an abundant and diverse group of protists representing a wealth of unique biology and ecology. While many dinoflagellates are photosynthetic or mixotrophic, many taxa are heterotrophs, often with complex feeding strategies. Compared to their photosynthetic counterparts, heterotrophic dinoflagellates remain understudied, as they are difficult to culture. One exception, a long-cultured isolate originally classified as Amphidinium but recently reclassified as Oxytoxum, has been the subject of a number of feeding, growth, and chemosensory studies. This lineage was recently determined to be closely related to Prorocentrum using phylogenetics of ribosomal RNA gene sequences, but the exact nature of this relationship remains unresolved. Using transcriptomes sequenced from culture and three single cells from the environment, we produce a robust phylogeny of 242 genes, revealing Oxytoxum is likely sister to the Prorocentrum clade, rather than nested within it. Molecular investigations uncover evidence of a reduced, nonphotosynthetic plastid and proteorhodopsin, a photoactive proton pump acquired horizontally from bacteria. We describe the ultrastructure of O. lohmannii, including densely packed trichocysts, and a new type of mucocyst. We observe that O. lohmannii feeds preferentially on cryptophytes using myzocytosis, but can also feed on various phytoflagellates using conventional phagocytosis. O. lohmannii is amenable to culture, providing an opportunity to better study heterotrophic dinoflagellate biology and feeding ecology.

Assessing pollution degree and human health risks from hazardous element distribution in soils near gold mines in a Colombian Andean region: Correlation with phytotoxicity biomarkers.

The assessment of human health risk due to the presence of hazardous elements in the environment is now necessary for environmental management and legislative initiatives. This study aims to determine the contamination by As, Cd, Pb, and Cr in soils near gold mines in three municipalities located in the Andean region of Colombia. One of the main objectives of the study is to explore possible correlations between the Lifetime Cancer Risk (LCR) and phytotoxicity biomarkers using a simple and rapid-response plant model, radish (Raphanus sativus L.). In the municipality of Yalí, Puerto Berrío, and Buriticá, the hazardous elements concentrations ranged from 8.1 to 35.5, 1.7 to 892, and 5.8 to 49.8 for As, 0.1 to 4.6, 0.1 to 65.2, and 0.5 to 18.2 for Cd, 18.5 to 201.3, 13.0 to 1908, and 189 to 2345 for Pb, and 5.4 to 118.4, 65.4 to 301, and 5.4 to 102.3 for Cr, respectively. The results showed that the biomarkers intracellular H2O2 concentration, antioxidant activity, and radicle elongation exhibited significant (P < 0.05) variations associated with the concentration of hazardous elements in the soils. Significant correlations (P < 0.05, r > 0.58) were found between the biomarkers and the LCR for Cd, Pb, and Cr, but not for As. The results using biomarkers reveal that soil pH and organic matter content are important variables that control the bioavailability of these elements in the soil. The use of indicators like LCR alone has limitations and should be accompanied by the use of biomarkers that allow for a better understanding of the biological system's response to exposure to potentially toxic elements. The results obtained show the urgent need to implement public policies to minimize exposure to hazardous substances in areas near gold mining projects.

Combining anaerobic digestion slurry and different biochars to develop a biochar-based slow-release NPK fertilizer.

In this research, we developed a biochar-based fertilizer using biogas slurry and biochar derived from lignocellulosic agro-residues. Biogas slurry was obtained through the anaerobic digestion of the organic fraction of municipal solid waste (fresh vegetable biomass and/or prepared food), while biochars were derived from residues from quinoa, maize, rice, and sugarcane. The biochar-based fertilizers were prepared using an impregnation process, where the biogas slurry was mixed with each of the raw biochars. Subsequently, we characterized the N, P and K concentrations of the obtained biochar-based fertilizers. Additionally, we analyzed their surface properties using SEM/EDS and FTIR and conducted a slow-release test on these biochar-based fertilizers to assess their capability to gradually release nutrients. Lastly, a bioassay using cucumber plants was conducted to determine the N, P, and K bioavailability. Our findings revealed a significant correlation (r > 0.67) between the atomic O/C ratio, H/C ratio, cation exchange capacity, surface area, and the base cations concentration with N, P, and/or K adsorption on biochar. These properties, in turn, were linked to the capability of the biochar-based fertilizer to release nutrients in a controlled manner. The biochar-based fertilizer derived from corn residues showed <15 % release of N, P and K at 24 h. Utilization of these biochar-based fertilizers had a positive impact on the mineral nutrition of cucumber plants, resulting in an average increase of 61 % in N, 32 % in P, and 19 % in K concentrations. Our results underscore the potential of biochar-based fertilizers in controlled nutrient release and enhanced plant nutrition. Integration of biochar and biogas slurry offers a promising and sustainable approach for NPK recovery and fertilizer production in agriculture. This study presents an innovative and sustainable approach combining the use of biochar for NPK recovery from biogas slurry and its use as a biochar-based fertilizer in agriculture.

Using symbolic machine learning to assess and model substance transport and decay in water distribution networks.

Drinking water infrastructures are systems of pipes which are generally networked. They play a crucial role in transporting and delivering clean water to people. The water quality analysis refers to the evaluation of the advective diffusion of any substance in drinking water infrastructures from source nodes. Such substances could be a contamination for the system or planned for the disinfection, e.g., chlorine. The water quality analysis is performed by integrating the differential equation in the pipes network domain using the kinetics of the substance decay and the Lagrangian scheme. The kinetics can be formulated using a specific reaction order depending on the substance characteristics. The basis for the integration is the pipes velocity field calculated by means of hydraulic analysis. The aim of the present work is to discover the intrinsic mechanism of the substance transport in drinking water infrastructures, i.e., their pipes network domain, using the symbolic machine learning, named Evolutionary Polynomial Regression, which provides "synthetic" models (symbolic formulas) from data. We demonstrated, using one real network and two test networks, that the concentration at each node of the network can be predicted using the travel time along the shortest path(s) between the source and each node. Additionally, the formula models provided by symbolic machine learning allowed discovering that a unique formula based on kinetic reaction model structure allows predicting the residual substance concentration at each node, given the source node concentration, surrogating with a good accuracy the integration of the differential equations.

Phosphorus-Loaded Biochar-Assisted Phytoremediation to Immobilize Cadmium, Chromium, and Lead in Soils.

Soil contamination with heavy metals (HM) poses significant challenges to food security and public health, requiring the exploration of effective remediation strategies. This study aims to evaluate the remediation process of soils contaminated with Cd, Cr, and Pb using Lolium perenne assisted by four types of biochar: (i) activated coffee husk biochar (BAC), (ii) nonactivated biochar coffee husk (BSAC), (iii) activated sugar cane leaf biochar (BAA), and (iv) nonactivated biochar sugar cane leaf (BSAA). Biochar, loaded with phosphorus (P), was applied to soils contaminated with Cd, Cr, and Pb. L. perenne seedlings, averaging 2 cm in height, were planted. The bioavailability of P and heavy metals (HM) was monitored every 15 days until day 45, when the seedlings reached an average height of 25 cm. At day 45, plant harvesting was conducted and stems and roots were separated to determine metal concentrations in both plant parts and the soil. The study shows that the combined application of biochar and L. perenne positively influences the physicochemical properties of the soil, resulting in an elevation of pH and electrical conductivity (EC). The utilization of biochar contributes to an 11.6% enhancement in the retention of HM in plant organs. The achieved bioavailability of heavy metals in the soil was maintained at levels of less than 1 mg/kg. Notably, Pb exhibited a higher metal retention in plants, whereas Cd concentrations were comparatively lower. These findings indicate an increase in metal immobilization efficiencies when phytoremediation is assisted with P-loaded biochar. This comprehensive assessment highlights the potential of biochar-assisted phytoremediation as a promising approach for mitigating heavy metal contamination in soils.

Evaluation of different composting systems on an industrial scale as a contribution to the circular economy and its impact on human health.

Due to the production of volatile organic compounds (VOCs), large-scale composting can cause air pollution and occupational health issues. Due to this, it is necessary to determine if the amount generated poses a health risk to plant workers, which can be a starting point for those in charge of composting plant facilities. As a result, the goal of this work is to conduct a thorough analysis of both the physicochemical features and the VOC generation of three large-scale systems. For ten weeks, the three different composting plants were monitored weekly, and VOC identification and quantification were performed using GC-MS gas chromatography. It has been observed that the biggest risk related with VOC formation occurs between the fourth and fifth weeks, when microbial activity is at its peak. Similarly, it has been demonstrated that xylenes and toluene are the ones that are produced in the greatest quantity. Finally, after ten weeks of processing, it was discovered that the material obtained complies with the regulations for the sale of an amendment.Implications: The evaluation and monitoring of the composting processes at an industrial scale is very important, due to the implications they bring. VOCs are produced by the operation of composting facilities with substantial amounts of solid waste, such as the companies in this study. These may pose a health risk to those working in the plants; thus, it is critical to understand where the VOCs occur in the process in order to maintain workers' occupational health measures. This form of evaluation is rare or nonexistent in Colombia, which is why conducting this type of study is critical, as it will provide crucial input into determining when the highest levels of VOC generation occur. These are the ones that may pose a risk at some point, but with proper occupational safety planning, said risk may be avoided. This work has evaluated three composting systems, with different types of waste and mixtures. According to reports, while composting systems continue to produce VOCs and their generation is unavoidable, the potential risk exists only within the plant. These findings can pave the way for the implementation of public policies that will improve the design and operation of composting plants. There is no specific legislation in Colombia for the design and execution of this sort of technology, which allows the use of organic waste.

Changes in Lolium perenne L. rhizosphere microbiome during phytoremediation of Cd- and Hg-contaminated soils.

The contamination of soil and water by metals such as mercury (Hg) and cadmium (Cd) has been increasing in recent years, because of anthropogenic activities such as mining and agriculture, respectively. In this work, the changes in the rhizosphere microbiome of Lolium perenne L. during the phytoremediation of soils contaminated with Hg and Cd were evaluated. For this, two soil types were sampled, one inoculated with mycorrhizae and one without. The soils were contaminated with Hg and Cd, and L. perenne seeds were sown and harvested after 30 days. To assess changes in the microbiome, DNA isolation tests were performed, for which samples were subjected to two-step PCR amplification with specific 16S rDNA V3-V4 primers (337F and 805R). With mycorrhizae, changes had been found in the absorption processes of metals and a new distribution. While with respect to microorganisms, families such as the Enterobacteriaceae have been shown to have biosorption and efflux effects on metals such as Hg and Cd. Mycorrhizae then improve the efficiency of removal and allow the plant to better distribute the absorbed concentrations. Overall, L. perenne is a species with a high potential for phytoremediation of Cd- and Hg-contaminated soils in the tropics. Inoculation with mycorrhizae modifies the phytoremediation mechanisms of the plant and the composition of microorganisms in the rhizosphere. Mycorrhizal inoculation and changes in the microbiome were associated with increased plant tolerance to Cd and Hg. Microorganism-assisted phytoremediation is an appropriate alternative for L. perenne.

Remediation of Pb-contaminated soil using biochar-based slow-release P fertilizer and biomonitoring employing bioindicators.

Soil contamination by Pb can result from different anthropogenic sources such as lead-based paints, gasoline, pesticides, coal burning, mining, among others. This work aimed to evaluate the potential of P-loaded biochar (Biochar-based slow-release P fertilizer) to remediate a Pb-contaminated soil. In addition, we aim to propose a biomonitoring alternative after soil remediation. First, rice husk-derived biochar was obtained at different temperatures (450, 500, 550, and 600 °C) (raw biochars). Then, part of the resulting material was activated. Later, the raw biochars and activated biochars were immersed in a saturated KH2PO4 solution to produce P-loaded biochars. The ability of materials to immobilize Pb and increase the bioavailability of P in the soil was evaluated by an incubation test. The materials were incorporated into doses of 0.5, 1.0, and 2.0%. After 45 days, soil samples were taken to biomonitor the remediation process using two bioindicators: a phytotoxicity test and enzyme soil activity. Activated P-loaded biochar produced at 500 °C has been found to present the best conditions for soil Pb remediation. This material significantly reduced the bioavailability of Pb and increased the bioavailability of P. The phytotoxicity test and the soil enzymatic activity were significantly correlated with the decrease in bioavailable Pb but not with the increase in bioavailable P. Biomonitoring using the phytotoxicity test is a promising alternative for the evaluation of soils after remediation processes.

Uncovering commercial activity in informal cities.

Knowledge of the spatial organization of economic activity within a city is a key to policy concerns. However, in developing cities with high levels of informality, this information is often unavailable. Recent progress in machine learning together with the availability of street imagery offers an affordable and easily automated solution. Here, we propose an algorithm that can detect what we call visible establishments using street view imagery. By using Medellín, Colombia as a case study, we illustrate how this approach can be used to uncover previously unseen economic activity. By applying spatial analysis to our dataset, we detect a polycentric structure with five distinct clusters located in both the established centre and peripheral areas. Comparing the density of visible establishments with that of registered firms, we infer that informal activity concentrates in poor but densely populated areas. Our findings highlight the large gap between what is captured in official data and the reality on the ground.

Application of an artificial neural networks for predicting the heat transfer in conical spouted bed using the Nusselt module.

Artificial neural networks have been used since the last decade as a satisfactory alternative for the prediction of the fluid-dynamic behavior of particles. The aim of this work has been to develop a model based on artificial neural networks (ANN) suitable for quantifying the influence of multiple factors on the heat transfer rate in a conical spouted bed reactor. The Nusselt module has been taken as an exit point and nine input factors have been evaluated, among which are the height of the bed, the diameter of the contactor, the angle of the cone, and the minimum spouting speed, among others. The model has been found to fit appropriately to the equations proposed in the literature and can be used as a suitable model to predict the behavior of heat transfer in conical spouted bed reactors operating with biomass.

Assessment of the application of two amendments (lime and biochar) on the acidification and bioavailability of Ni in a Ni-contaminated agricultural soils of northern Colombia.

Soil acidification and increased bioavailability of Ni are problems that affect agricultural soils. This study aims to compare the effects of both lime and biochar from corn stover in soil acidity correction, improving soil physicochemical properties and soil re-acidification resistance. As well as assesseing the impacts on human health risk caused by bioavailability of nickel. A greenhouse pot experiment was conducted for 30 days to determine the effect of biochar and lime on soil physicochemical properties and nickel bioavailability. Afterwards, a laboratory test was carried out to determine the repercussions of both amendments on soil resistance to re-acidification and re-mobilization of nickel. Human health risk was determined using nickle bioavailable concentration. Overall, the results of this study showed that biochar application significantly reduced soil acidity from 8.2 ± 0.8 meq 100 g-1 to 1.9 ± 0.3 meq 100 g-1, this reduction markedly influenced the bioavailability of nickel, which decreased significantly. Moreover, soil physicochemical properties and soil resistance to acidification were improved. Furthermore, biochar significantly reduced human health risk compared to lime application, even under a re-acidification scenario. It was possible to verify that Ni immobilization in the soil was increased when biochar was used. Soil Ni immobilization is associated with co-precipitation and chemisorption. Hence, it was demonstrated that biochar is more effective than lime in reducing soil acidity and remedying nickel-contaminated agricultural soils.

Merging Plastics, Microbes, and Enzymes: Highlights from an International Workshop.

In the Anthropocene, plastic pollution is a worldwide concern that must be tackled from different viewpoints, bringing together different areas of science. Microbial transformation of polymers is a broad-spectrum research topic that has become a keystone in the circular economy of fossil-based and biobased plastics. To have an open discussion about these themes, experts in the synthesis of polymers and biodegradation of lignocellulose and plastics convened within the framework of The Transnational Network for Research and Innovation in Microbial Biodiversity, Enzymes Technology and Polymer Science (MENZYPOL-NET), which was recently created by early-stage scientists from Colombia and Germany. In this context, the international workshop "Microbial Synthesis and Degradation of Polymers: Toward a Sustainable Bioeconomy" was held on 27 September 2021 via Zoom. The workshop was divided into two sections, and questions were raised for discussion with panelists and expert guests. Several key points and relevant perspectives were delivered, mainly related to (i) the microbial evolution driven by plastic pollution; (ii) the relevance of and interplay between polymer structure/composition, enzymatic mechanisms, and assessment methods in plastic biodegradation; (iii) the recycling and valorization of plastic waste; (iv) engineered plastic-degrading enzymes; (v) the impact of (micro)plastics on environmental microbiomes; (vi) the isolation of plastic-degrading (PD) microbes and design of PD microbial consortia; and (vii) the synthesis and applications of biobased plastics. Finally, research priorities from these key points were identified within the microbial, enzyme, and polymer sciences.

Use of Biochar from Rice Husk Pyrolysis: Part A: Recovery as an Adsorbent in the Removal of Emerging Compounds.

One of the main products of pyrolysis is char. For the better performance and improvement of its physicochemical properties, it is necessary to make temperature changes. In this study, different temperatures have been tested for the pyrolysis of rice husk, and the biochar obtained from the process went through an evaluation to test its yield in the removal of emerging compounds such as azithromycin (AZT) and erythromycin (ERY). For this, pyrolysis of rice husk has been carried out at temperatures of 450, 500, 550, and 600 °C, and the biochars have been characterized by ultimate analysis and proximate analysis, as well as specific surface area tests. Then, different adsorption tests have been carried out with a 200 mg L-1 drug (AZT and ERY) solution prepared in the laboratory. All biochars have been found to present removal percentages higher than 95%. Therefore, obtaining biochar from rice husk at any temperature and using it in the removal of high-molecular-weight compounds are quite suitable.

Opportunities and challenges for integrating the development of sustainable polymer materials within an international circular (bio)economy concept.

Highlights: The production and consumption of commodity polymers have been an indispensable part of the development of our modern society. Owing to their adjustable properties and variety of functions, polymer-based materials will continue playing important roles in achieving the Sustainable Development Goals (SDG)s, defined by the United Nations, in key areas such as healthcare, transport, food preservation, construction, electronics, and water management. Considering the serious environmental crisis, generated by increasing consumption of plastics, leading-edge polymers need to incorporate two types of functions: Those that directly arise from the demands of the application (e.g. selective gas and liquid permeation, actuation or charge transport) and those that enable minimization of environmental harm, e.g., through prolongation of the functional lifetime, minimization of material usage, or through predictable disintegration into non-toxic fragments. Here, we give examples of how the incorporation of a thoughtful combination of properties/functions can enhance the sustainability of plastics ranging from material design to waste management. We focus on tools to measure and reduce the negative impacts of plastics on the environment throughout their life cycle, the use of renewable sources for their synthesis, the design of biodegradable and/or recyclable materials, and the use of biotechnological strategies for enzymatic recycling of plastics that fits into a circular bioeconomy. Finally, we discuss future applications for sustainable plastics with the aim to achieve the SDGs through international cooperation. Abstract: Leading-edge polymer-based materials for consumer and advanced applications are necessary to achieve sustainable development at a global scale. It is essential to understand how sustainability can be incorporated in these materials via green chemistry, the integration of bio-based building blocks from biorefineries, circular bioeconomy strategies, and combined smart and functional capabilities.

Use of biochar from rice husk pyrolysis: assessment of reactivity in lime pastes.

Biochar has unique properties such as its porous structure, specific surface area, and stable chemical properties. The rice husk is characterized by its high content of silica, and that during the pyrolysis process it generates a considerable amount of biochar that can be used in different processes. The aim of this work is to evaluate several biochars from the pyrolysis process in the reactivity of lime pastes. For this, biochar has been obtained at four different temperatures (450, 500, 550 and 600 °C), and they have been characterized by XRF, XRD, ICP-EOS, and particle size distribution, to determine their phases and their chemical composition. Biochar has been replaced in lime pastes in different proportions (5, 10, 15, 20, 25 and 30%), and exposed to different curing times (1, 3, 7, 14, 28, 56, 90 and 180 days). It has been found that all the replacements show reactivity within the lime pastes and that the percentage of 25% in all the biochar tested could be an adequate replacement.

Assessment of the potential risk of leaching pesticides in agricultural soils: study case Tibasosa, Boyacá, Colombia.

Agricultural soils need monitoring systems to address pesticide risks for humans and the environment. The purpose of this paper was to obtain leaching risk maps of the pesticides imidacloprid, lambda-cyhalothrin, and chlorpyrifos in agricultural soil under an onion (Allium cepa L.) crop in Tibasosa, Boyacá, Colombia. This was obtained by studying the soil types in the area, analyzing the behavior of pollutants in the soil profile, using a delay factor and an attenuation factor to finally include GIS allowing visualization of the areas of greater potential risk in the study area.

Gene expression and morphological responses of Lolium perenne L. exposed to cadmium (Cd2+) and mercury (Hg2+).

Soil contamination with heavy metals is a major problem worldwide, due to the increasing impact mainly caused by anthropogenic activities. This research evaluated the phytoremediation capacity of, Lolium perenne for heavy metals such as cadmium (Cd2+) and mercury (Hg2+), and the effects of these metals on morphology, biomass production, and the changes on gene expression. Seeds of L. perenne were exposed to six concentrations of Cd2+ and Hg2+ in the range of 0 to 25 mg L-1, and two mixtures of Cd2+-Hg2. The Non-Observed Effect Level (NOEL) was established with dose response curves and the expression of specific genes was evaluated applying a commercially available quantitative reverse transcription (RT-qPCR) assay. There was no significant effect when exposing the seeds to Hg2+, for Cd2+ the maximum concentration was established in 0.1 mg L-1, and for the two concentrations of mixtures, there was a negative effect. An increase of expression of genes that regulate antioxidant activity and stress was found when the plant was exposed to heavy metals. Given the high tolerance to metals analyzed that was reflected both, the development of the plant and in its molecular response, these results highlight that L. perenne is a plant with phytoremediator potential.

Predicting non-deposition sediment transport in sewer pipes using Random forest.

Sediment transport in sewers has been extensively studied in the past. This paper aims to propose a new method for predicting the self-cleansing velocity required to avoid permanent deposition of material in sewer pipes. The new Random Forest (RF) based model was implemented using experimental data collected from the literature. The accuracy of the developed model was evaluated and compared with ten promising literature models using multiple observed datasets. The results obtained demonstrate that the RF model is able to make predictions with high accuracy for the whole dataset used. These predictions clearly outperform predictions made by other models, especially for the case of non-deposition with deposited bed criterion that is used for designing large sewer pipes. The volumetric sediment concentration was identified as the most important parameter for predicting self-cleansing velocity.

Inestabilidad Posterior de Hombro. Revisión de conceptos actuales / Posterior Shoulder instability. Current concepts review

La inestabilidad glenohumeral posterior crónica, tiene como presentación la subluxación posterior recurrente que se caracteriza por dolor mas que sensación de inestabilidad; sin embargo si esta acompañada de otras inestabilidades como la anterior o inferior, estaríamos ante un escenario diferente, conocido como inestabilidad multidireccional. Si bien la inestabilidad posterior de hombro es una patología poco común en comparación con la inestabilidad anterior, cada vez hay más investigaciones y literatura del tema, que ha llevado a los especialistas a mejorar el conocimiento y entendimiento del mecanismo y la fisiopatología de dicha entidad.

Chronic posterior glenohumeral instability presents recurrent posterior subluxation that is characterized by pain rather than a sensation of instability. However, if it is accompanied by other instabilities such as the previous or lower one, we would be facing a different scenario known as multidirectional instability. Although posterior shoulder instability is a rare pathology compared to anterior instability, there is an increasing amount of research and literature on the subject, which has led specialists to improve the knowledge and understanding of the mechanism and pathophysiology of this entity.

Removal of Drugs in Polluted Waters with Char Obtained by Pyrolysis of Hair Waste from the Tannery Process.

The presence and final destination of pharmaceutical compounds in waters constitute one of the emerging events in current environmental chemistry. Two widely consumed compounds have been evaluated in this study, amoxicillin (AMOX) and diclofenac (DFC), at a concentration of 200 mg L-1. The presence of both in wastewater has been verified, generating problems in ecosystems and human health. Pyrolysis of hair waste from a tannery process was performed in a fixed-bed reactor. Char was obtained at different operating temperatures (300, 350, 400, and 450 °C), which underwent a characterization of heavy metals and elemental composition. An activation process was applied to the char obtained at 450 °C by means of physicochemical processes and with two chemical agents (KOH and K2CO3). For the removal of drugs, two separate tests were performed, one for 28 days and the other one for 4 h, to assess the efficiency and the percentage of removal. It was found that the char obtained at 450 °C is the one that removes most of both compounds: more than 90% of AMOX and more than 80% of DFC.