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1.
Geriatr Orthop Surg Rehabil ; 14: 21514593231193234, 2023.
Article in English | MEDLINE | ID: mdl-37545567

ABSTRACT

Objective: Fear of falling, anxiety, depression, and pain levels are important risk factors for poor functional outcomes that may potentially be modifiable. We aimed to examine prospective associations between those factors following surgery for intertrochanteric hip fracture. Methods: This study is a prospective observational cohort study of patients aged over 65 diagnosed with isolated intertrochanteric hip fracture. Three hundred and seventy patients who underwent intramedullary fixation surgery were screened; 188 cases were included in our final evaluation. Patients with any concomitant fracture, major psychiatric/neurocognitive and neurological disorders and those with any other major disease were excluded from the study. Age, Charlson Comorbidity Index (CCI), Geriatric Depression Scale (GDS), State-Trait Anxiety Inventory (STAI), Falls Efficacy Scale International (FES-I), and Visual Analog Scale (VAS) scores on the day of surgery (baseline) were evaluated as predictors of poor/good outcome at 90 days after surgery, by Harris Hip Score (HHS) with a cut-off score of 70. Results: HHS score was significantly predicted at baseline by the full model [χ2 (7) = 18.18, P = .01]. However, only STAI-state scores were significantly added to the model [Exp (B) 95% CI: .92 (.86-.99)]. Conclusions: In this prospective cohort study, we found that higher levels of anxiety state on the day of surgery predicts a poor outcome at 90 days following surgery. We did not find significant associations between other variables, including age, GDS, STAI-trait, FES-I, VAS, and CCI. This potentially modifiable psychological factor may inform surgeons and could be a potential mediator. Future prospective studies are needed to replicate these findings. Level of evidence: Prognostic level I.

2.
Article in English | MEDLINE | ID: mdl-18419269

ABSTRACT

Cryptochrome (CRY) is a photolyase-like flavoprotein with no DNA-repair activity but with known or presumed blue-light receptor function. Animal CRYs have DNA-binding and autokinase activities, and their flavin cofactor is reduced by photoinduced electron transfer. In Drosophila, CRY is a major circadian photoreceptor, and in mammals, the two CRY proteins are core components of the molecular clock and potential circadian photoreceptors. In mammals, CRYs participate in cell cycle regulation and the cellular response to DNA damage by controlling the expression of some cell cycle genes and by directly interacting with checkpoint proteins.


Subject(s)
Flavoproteins/chemistry , Flavoproteins/physiology , Animals , Cell Cycle , Circadian Rhythm , Cryptochromes , Deoxyribodipyrimidine Photo-Lyase/chemistry , Deoxyribodipyrimidine Photo-Lyase/genetics , Deoxyribodipyrimidine Photo-Lyase/physiology , Drosophila/genetics , Drosophila/physiology , Drosophila Proteins/chemistry , Drosophila Proteins/genetics , Drosophila Proteins/physiology , Evolution, Molecular , Eye Proteins/chemistry , Eye Proteins/genetics , Eye Proteins/physiology , Flavoproteins/genetics , Flavoproteins/history , History, 19th Century , History, 20th Century , History, 21st Century , Humans , Models, Molecular , Molecular Structure , Photochemistry , Photoreceptor Cells, Invertebrate/chemistry , Photoreceptor Cells, Invertebrate/physiology , Photoreceptor Cells, Vertebrate/chemistry , Photoreceptor Cells, Vertebrate/physiology , Phylogeny , Receptors, G-Protein-Coupled/chemistry , Receptors, G-Protein-Coupled/genetics , Receptors, G-Protein-Coupled/physiology
3.
Mol Cell Biol ; 21(21): 7355-65, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11585917

ABSTRACT

The UV-sensitive V-H1 cell line has a T46I substitution mutation in the Walker A box in both alleles of XPD and lacks DNA helicase activity. We characterized three partial revertants that curiously display intermediate UV cytotoxicity (2- to 2.5-fold) but normal levels of UV-induced hprt mutations. In revertant RH1-26, the efficient removal of pyrimidine (6-4) pyrimidone photoproducts from both strands of hprt suggests that global-genomic nucleotide excision repair is normal, but the pattern of cyclobutane pyrimidine dimer removal suggests that transcription-coupled repair (TCR) is impaired. To explain the intermediate UV survival and lack of RNA synthesis recovery in RH1-26 after 10 J of UV/m(2), we propose a defect in repair-transcription coupling, i.e., the inability of the cells to resume or reinitiate transcription after the first TCR event within a transcript. All three revertants carry an R658H suppressor mutation, in one allele of revertants RH1-26 and RH1-53 and in both alleles of revertant RH1-3. Remarkably, the R658H mutation produces the clinical phenotype of trichothiodystrophy (TTD) in several patients who display intermediate UV sensitivity. The XPD(R658H) TTD protein, like XPD(T46I/R658H), is codominant when overexpressed in V-H1 cells and partially complements their UV sensitivity. Thus, the suppressing R658H substitution must restore helicase activity to the inactive XPD(T46I) protein. Based on current knowledge of helicase structure, the intragenic reversion mutation may partially compensate for the T46I mutation by perturbing the XPD structure in a way that counteracts the effect of this mutation. These findings have implications for understanding the differences between xeroderma pigmentosum and TTD and illustrate the value of suppressor genetics for studying helicase structure-function relationships.


Subject(s)
DNA Helicases/genetics , DNA Repair , DNA-Binding Proteins , Mutation , Proteins/genetics , Proteins/physiology , Suppression, Genetic , Transcription Factors , Alleles , Animals , Blotting, Western , Cell Line , Cloning, Molecular , Cricetinae , DNA, Complementary/metabolism , Dose-Response Relationship, Radiation , Phenotype , Plasmids/metabolism , Protein Structure, Tertiary , Structure-Activity Relationship , Time Factors , Transcription, Genetic , Transfection , Ultraviolet Rays , Xeroderma Pigmentosum/genetics , Xeroderma Pigmentosum Group D Protein
4.
Proc Natl Acad Sci U S A ; 98(20): 11236-41, 2001 Sep 25.
Article in English | MEDLINE | ID: mdl-11572977

ABSTRACT

Checkpoint Rad proteins function early in the DNA damage checkpoint signaling cascade to arrest cell cycle progression in response to DNA damage. This checkpoint ensures the transmission of an intact genetic complement to daughter cells. To learn about the damage sensor function of the human checkpoint Rad proteins, we purified a heteropentameric complex composed of hRad17-RFCp36-RFCp37-RFCp38-RFCp40 (hRad17-RFC) and a heterotrimeric complex composed of hRad9-hHus1-hRad1 (checkpoint 9-1-1 complex). hRad17-RFC binds to DNA, with a preference for primed DNA and possesses weak ATPase activity that is stimulated by primed DNA and single-stranded DNA. hRad17-RFC forms a complex with the 9-1-1 heterotrimer reminiscent of the replication factor C/proliferating cell nuclear antigen clamp loader/sliding clamp complex of the replication machinery. These findings constitute biochemical support for models regarding the roles of checkpoint Rads as damage sensors in the DNA damage checkpoint response of human cells.


Subject(s)
Cell Cycle Proteins/metabolism , DNA Damage , DNA-Binding Proteins/metabolism , Exonucleases/metabolism , Adenosine Triphosphatases/metabolism , Binding Sites , Cell Cycle , Cell Cycle Proteins/genetics , Cell Cycle Proteins/isolation & purification , Cell Line , Cell-Free System , DNA/metabolism , DNA Replication , DNA-Binding Proteins/genetics , DNA-Binding Proteins/isolation & purification , Exonucleases/isolation & purification , HeLa Cells , Humans , Kinetics , Macromolecular Substances , Protein Biosynthesis , Protein Subunits , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Replication Protein C , Signal Transduction , Transcription, Genetic , Transfection
5.
Proc Natl Acad Sci U S A ; 98(20): 11708-13, 2001 Sep 25.
Article in English | MEDLINE | ID: mdl-11562477

ABSTRACT

To investigate the role of retinal-based pigments (opsins) in circadian photoreception in mice, animals mutated in plasma retinol binding protein were placed on a vitamin A-free diet and tested for photic induction of gene expression in the suprachiasmatic nucleus. After 10 months on the vitamin A-free diet, the majority of mice contained no detectable retinal in their eyes. These mice demonstrated fully intact photic signaling to the suprachiasmatic nucleus as measured by acute mPer mRNA induction in the suprachiasmatic nucleus in response to bright or dim light. The data suggest that a non-opsin pigment is the primary circadian photoreceptor in the mouse.


Subject(s)
Photoreceptor Cells, Vertebrate/physiology , Retinol-Binding Proteins/metabolism , Signal Transduction/physiology , Suprachiasmatic Nucleus/physiopathology , Vitamin A Deficiency/physiopathology , Animals , Circadian Rhythm/physiology , Crosses, Genetic , Female , Homozygote , In Situ Hybridization , Male , Mice , Mice, Inbred C57BL , Reference Values , Retinaldehyde/physiology , Retinol-Binding Proteins/deficiency , Retinol-Binding Proteins/genetics , Retinol-Binding Proteins, Plasma , Suprachiasmatic Nucleus/physiology , Time Factors
6.
J Biol Chem ; 276(27): 25421-6, 2001 Jul 06.
Article in English | MEDLINE | ID: mdl-11353769

ABSTRACT

Nucleotide excision repair is a general repair system that eliminates many dissimilar lesions from DNA. In an effort to understand substrate determinants of this repair system, we tested DNAs with minor backbone modifications using the ultrasensitive excision assay. We found that a phosphorothioate and a methylphosphonate were excised with low efficiency. Surprisingly, we also found that fragments of 23-28 nucleotides and of 12-13 nucleotides characteristic of human and Escherichia coli excision repair, respectively, were removed from undamaged DNA at a significant rate. Considering the relative abundance of undamaged DNA in comparison to damaged DNA in the course of the life of an organism, we conclude that, in general, excision from and resynthesis of undamaged DNA may exceed the excision and resynthesis caused by DNA damage. As resynthesis is invariably associated with mutations, we propose that gratuitous repair may be an important source of spontaneous mutations.


Subject(s)
DNA Damage , DNA Repair , Deoxyribonucleases/metabolism , Guanine/analogs & derivatives , Mutation/genetics , Base Sequence , DNA, Bacterial/biosynthesis , Escherichia coli , Guanine/metabolism , Humans , Models, Chemical , Molecular Sequence Data , Organophosphorus Compounds/metabolism
7.
Proc Natl Acad Sci U S A ; 97(26): 14697-702, 2000 Dec 19.
Article in English | MEDLINE | ID: mdl-11114194

ABSTRACT

The daily light-dark (LD) cycle exerts a powerful influence on the temporal organization of behavior and physiology. Much of this influence is preserved in behaviorally blind retinally degenerate mice; the photoreceptors underlying this nonvisual phototransduction are unknown. The mammalian eye contains at least two classes of photoactive pigments, the vitamin A-based opsins and the vitamin B(2)-based cryptochromes. To genetically define the roles of these pigments in light modulation of behavior, we generated rd/rd;mCry1(-)/mCry1(-);mCry2(-)/mCry2(-) mutant mice lacking rods and most cones as well as both cryptochrome proteins. The response of the mutant mouse to photic input was analyzed at both behavioral and molecular levels. Behaviorally, mice lacking either classical photoreceptors or cryptochromes exhibited strongly rhythmic locomotor responses to 10 and 100 lux daily LD 12 h/12-h cycles; however, triple mutant mice carrying both cryptochrome and retinal degenerate mutations were nearly arrhythmic under both LD cycles and in constant darkness. At the molecular level, the light induction of c-fos transcription in the suprachiasmatic nucleus was markedly reduced in the triple mutant mouse compared with either rd/rd or cryptochrome mutant mice. These data indicate that classical opsins and cryptochromes serve functionally redundant roles in the transduction of light information to behavioral modulation and suggest a pleomorphic role for cryptochromes in both photoreception and central clock mechanism.


Subject(s)
Drosophila Proteins , Eye Proteins , Flavoproteins/physiology , Light Signal Transduction/physiology , Photoreceptor Cells, Invertebrate , Retinal Rod Photoreceptor Cells/physiology , Rod Opsins/physiology , Animals , Cryptochromes , Cyclic GMP/metabolism , Female , Flavoproteins/genetics , Male , Mice , Mice, Inbred C3H , Mice, Knockout , Motor Activity , Photic Stimulation , Proto-Oncogene Proteins c-fos/genetics , Receptors, G-Protein-Coupled , Retina/pathology , Rod Opsins/genetics
8.
Mol Cell Biol ; 20(24): 9173-81, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11094069

ABSTRACT

To investigate the effect of nucleosomes on nucleotide excision repair in humans, we prepared a mononucleosome containing a (6-4) photoproduct in the nucleosome core and examined its repair with the reconstituted human excision nuclease system and with cell extracts. Nucleosomal DNA is repaired at a rate of about 10% of that for naked DNA in both systems. These results are in agreement with in vivo data showing a considerably slower rate of repair of overall genomic DNA relative to that for transcriptionally active DNA. Furthermore, our results indicate that the first-order packing of DNA in nucleosomes is a primary determinant of slow repair of DNA in chromatin.


Subject(s)
DNA Damage , DNA Repair/genetics , DNA/metabolism , Deoxyribonucleases/metabolism , Nucleosomes/genetics , Animals , Base Sequence , CHO Cells , Cell Extracts , Cricetinae , DNA-Binding Proteins/metabolism , HeLa Cells , Histones/metabolism , Humans , Kinetics , Macromolecular Substances , Models, Genetic , Molecular Sequence Data , Nucleosomes/metabolism , Oligonucleotides/genetics , Oligonucleotides/metabolism , RNA-Binding Proteins/metabolism , Replication Protein A , Xeroderma Pigmentosum Group A Protein
9.
Annu Rev Biochem ; 69: 31-67, 2000.
Article in English | MEDLINE | ID: mdl-10966452

ABSTRACT

Circadian rhythms are oscillations in the biochemical, physiological, and behavioral functions of organisms that occur with a periodicity of approximately 24 h. They are generated by a molecular clock that is synchronized with the solar day by environmental photic input. The cryptochromes are the mammalian circadian photoreceptors. They absorb light and transmit the electromagnetic signal to the molecular clock using a pterin and flavin adenine dinucleotide (FAD) as chromophore/cofactors, and are evolutionarily conserved and structurally related to the DNA repair enzyme photolyase. Humans and mice have two cryptochrome genes, CRY1 and CRY2, that are differentially expressed in the retina relative to the opsin-based visual photoreceptors. CRY1 is highly expressed with circadian periodicity in the mammalian circadian pacemaker, the suprachiasmatic nucleus (SCN). Mutant mice lacking either Cry1 or Cry2 have impaired light induction of the clock gene mPer1 and have abnormally short or long intrinsic periods, respectively. The double mutant has normal vision but is defective in mPer1 induction by light and lacks molecular and behavioral rhythmicity in constant darkness. Thus, cryptochromes are photoreceptors and central components of the molecular clock. Genetic evidence also shows that cryptochromes are circadian photoreceptors in Drosophila and Arabidopsis, raising the possibility that they may be universal circadian photoreceptors. Research on cryptochromes may provide new understanding of human diseases such as seasonal affective disorder and delayed sleep phase syndrome.


Subject(s)
Drosophila Proteins , Eye Proteins , Flavoproteins/physiology , Photoreceptor Cells, Invertebrate , Retinal Pigments/physiology , Animals , Circadian Rhythm/physiology , Cryptochromes , Flavoproteins/genetics , Humans , Hypothalamus/physiology , Mice , Mice, Mutant Strains , Models, Biological , Photoreceptor Cells, Vertebrate/physiology , Receptors, G-Protein-Coupled , Retina/physiology , Retinal Pigments/genetics
10.
Cancer Res ; 60(10): 2607-10, 2000 May 15.
Article in English | MEDLINE | ID: mdl-10825130

ABSTRACT

The antiestrogen tamoxifen is used in the treatment of breast cancer and has recently been recommended as a chemopreventive drug for women at high risk for breast cancer. However, women treated with the drug have an increased incidence of endometrial cancer. It has been suggested that this endometrial cancer might result from mutagenic DNA adducts, which are formed by electrophilic tamoxifen species generated by metabolic activation of the drug. Because the frequency of damage-induced mutations is strongly dependent on the repairability of the lesion, we investigated the repair of the major tamoxifen-DNA adducts by the human nucleotide excision repair system. Using the reconstituted human excision repair system and synthetic DNA substrates, we found that the four types of tamoxifen-DNA adducts detected in the endometrium were repaired with moderate to poor efficiency by nucleotide excision repair. It is concluded that individual variations in repair capacity may play a role in the development of tamoxifen-induced endometrial cancer.


Subject(s)
Antineoplastic Agents, Hormonal/metabolism , DNA Adducts/metabolism , DNA Repair , Tamoxifen/metabolism , Breast Neoplasms/genetics , Breast Neoplasms/metabolism , Endometrium/metabolism , Female , Humans , Kinetics , Models, Chemical , Tumor Cells, Cultured
11.
J Biol Chem ; 275(11): 7451-4, 2000 Mar 17.
Article in English | MEDLINE | ID: mdl-10713044

ABSTRACT

Human RAD9 protein (hRAD9) is a homolog of the fission yeast Rad9 protein, one of the six so-called checkpoint Rad proteins involved in the early steps of DNA damage checkpoint response in Schizosaccharomyces pombe. It has been shown previously that, in vivo, a highly modified form of hRAD9 makes a ternary complex with two other checkpoint Rad proteins, hRAD1 and hHUS1 (Volkmer, E., and Karnitz, L. M. (1999) J. Biol. Chem. 274, 567-570; St. Onge, R. P., Udell, C. M., Casselman, R., and Davey, S. (1999) Mol. Biol. Cell. 10, 1985-1995). However, the function of this complex is not known at present. To help define the functions of checkpoint Rad proteins in humans, we expressed hRAD9 in Escherichia coli, purified the recombinant protein and characterized it. We found that hRAD9 is a 3' to 5' exonuclease and located the nuclease active site to the region between residues 51 and 91 of the 391-amino acid-long protein. Our results suggest that exonucleolytic processing of primary DNA lesion by hRAD9 may contribute to DNA damage checkpoint response in humans.


Subject(s)
Cell Cycle Proteins/metabolism , Exodeoxyribonucleases/metabolism , Nuclear Proteins/metabolism , Cell Cycle Proteins/genetics , Cell Nucleus/enzymology , DNA Repair , Exodeoxyribonuclease V , Exodeoxyribonucleases/genetics , Humans , Nuclear Proteins/genetics , Recombinant Proteins/metabolism , Signal Transduction , Substrate Specificity
12.
Mol Cell Biol ; 20(7): 2446-54, 2000 Apr.
Article in English | MEDLINE | ID: mdl-10713168

ABSTRACT

DNA interstrand cross-links are induced by many carcinogens and anticancer drugs. It was previously shown that mammalian DNA excision repair nuclease makes dual incisions 5' to the cross-linked base of a psoralen cross-link, generating a gap of 22 to 28 nucleotides adjacent to the cross-link. We wished to find the fates of the gap and the cross-link in this complex structure under conditions conducive to repair synthesis, using cell extracts from wild-type and cross-linker-sensitive mutant cell lines. We found that the extracts from both types of strains filled in the gap but were severely defective in ligating the resulting nick and incapable of removing the cross-link. The net result was a futile damage-induced DNA synthesis which converted a gap into a nick without removing the damage. In addition, in this study, we showed that the structure-specific endonuclease, the XPF-ERCC1 heterodimer, acted as a 3'-to-5' exonuclease on cross-linked DNA in the presence of RPA. Collectively, these observations shed some light on the cellular processing of DNA cross-links and reveal that cross-links induce a futile DNA synthesis cycle that may constitute a signal for specific cellular responses to cross-linked DNA.


Subject(s)
DNA Repair/genetics , DNA/biosynthesis , Animals , CHO Cells , Cricetinae , Cross-Linking Reagents , DNA-Binding Proteins/metabolism , Endonucleases/metabolism , Ficusin/metabolism , Humans , Malondialdehyde/metabolism , Molecular Structure , Proteins/metabolism , Replication Protein A
14.
Biochemistry ; 38(51): 16740-8, 1999 Dec 21.
Article in English | MEDLINE | ID: mdl-10606505

ABSTRACT

Ultraviolet radiation promotes the formation of a cyclobutane ring between adjacent pyrimidine residues on the same DNA strand to form a pyrimidine dimer. Such dimers may be restored to their monomeric forms through the action of a light-absorbing enzyme named DNA photolyase. The redox-active cofactor involved in the light-induced electron transfer reactions of DNA repair and enzyme photoactivation is a noncovalently bound FAD. In this paper, the FAD cofactor of Escherichia coli DNA photolyase was characterized as the neutral flavin semiquinone by EPR spectroscopy at 9.68 and 94.5 GHz. From the high-frequency/high-field EPR spectrum, the principal values of the axially symmetric g-matrix of FADH(*) were extracted. Both EPR spectra show an emerging hyperfine splitting of 0.85 mT that could be assigned to the isotropic hyperfine coupling constant (hfc) of the proton at N(5). To obtain more information about the electron spin density distribution ENDOR and TRIPLE resonance spectroscopies were applied. All major proton hfc's could be measured and unambiguously assigned to molecular positions at the isoalloxazin moiety of FAD. The isotropic hfc's of the protons at C(8alpha) and C(6) are among the smallest values reported for protein-bound neutral flavin semiquinones so far, suggesting a highly restricted delocalization of the unpaired electron spin on the isoalloxazin moiety. Two further hfc's have been detected and assigned to the inequivalent protons at C(1'). Some conclusions about the geometrical arrangement of the ribityl side chain with respect to the isoalloxazin ring could be drawn: Assuming tetrahedral angles at C(1') the dihedral angle between the C(1')-C(2') bond and the 2p(z)() orbital at N(10) has been estimated to be 170.4 degrees +/- 1 degrees.


Subject(s)
Deoxyribodipyrimidine Photo-Lyase/chemistry , Escherichia coli/enzymology , Flavin-Adenine Dinucleotide/chemistry , Anisotropy , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Buffers , Cloning, Molecular , Deoxyribodipyrimidine Photo-Lyase/biosynthesis , Deoxyribodipyrimidine Photo-Lyase/genetics , Deoxyribodipyrimidine Photo-Lyase/metabolism , Deuterium , Electron Spin Resonance Spectroscopy/methods , Escherichia coli/genetics , Flavin-Adenine Dinucleotide/metabolism , Flavins/chemistry , Flavins/metabolism , Free Radicals/chemistry , Free Radicals/metabolism , Nuclear Magnetic Resonance, Biomolecular/methods , Protons , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Repressor Proteins/chemistry , Repressor Proteins/genetics , Spectrophotometry, Ultraviolet
15.
Brain Res Mol Brain Res ; 71(2): 238-43, 1999 Aug 25.
Article in English | MEDLINE | ID: mdl-10521578

ABSTRACT

Cryptochromes are non-opsin photoactive pigments which have been recently implicated in circadian photoentrainment. In humans and mice, two cryptochromes, called CRY1 and CRY2, have been identified. Previously, it was shown that the expression of mCry1 oscillates with circadian periodicity in the suprachiasmatic nucleus (SCN) of the mouse. Herein, we have investigated the expression patterns of both mCry1 and mCry2 in various tissues and the effect of Cry2 knockout on Cry1 expression. First, the expression of Cry1 in the SCN, in contrast to mPer1 and other immediate early genes, is not inducible by acute light pulses. Second, we found that Cry1 transcription follows a circadian pattern in the liver and skeletal muscle. Third, mutation in Cry2 causes a phase delay in Cry1 and mPer1 expression both in the SCN and internal organs relative to wild-type animals. Finally, no obvious periodicity in mCry2 expression was seen in all tissues tested.


Subject(s)
Biological Clocks/genetics , Circadian Rhythm/physiology , Drosophila Proteins , Eye Proteins , Flavoproteins/genetics , Gene Expression Regulation , Photoreceptor Cells, Invertebrate , Animals , Cells, Cultured , Cryptochromes , Liver/metabolism , Male , Mice , Mice, Inbred C57BL , Molecular Sequence Data , Muscle, Skeletal/metabolism , Receptors, G-Protein-Coupled , Ribonucleases/metabolism , Suprachiasmatic Nucleus/metabolism , Testis/metabolism
16.
Proc Natl Acad Sci U S A ; 96(21): 12114-9, 1999 Oct 12.
Article in English | MEDLINE | ID: mdl-10518585

ABSTRACT

Cryptochromes regulate the circadian clock in animals and plants. Humans and mice have two cryptochrome (Cry) genes. A previous study showed that mice lacking the Cry2 gene had reduced sensitivity to acute light induction of the circadian gene mPer1 in the suprachiasmatic nucleus (SCN) and had an intrinsic period 1 hr longer than normal. In this study, Cry1(-/-) and Cry1(-/-)Cry2(-/-) mice were generated and their circadian clocks were analyzed at behavioral and molecular levels. Behaviorally, the Cry1(-/-) mice had a circadian period 1 hr shorter than wild type and the Cry1(-/-)Cry2(-/-) mice were arrhythmic in constant darkness (DD). Biochemically, acute light induction of mPer1 mRNA in the SCN was blunted in Cry1(-/-) and abolished in Cry1(-/-)Cry2(-/-) mice. In contrast, the acute light induction of mPer2 in the SCN was intact in Cry1(-/-) and Cry1(-/-)Cry2(-/-) animals. Importantly, in double mutants, mPer1 expression was constitutively elevated and no rhythmicity was detected in either 12-hr light/12-hr dark or DD, whereas mPer2 expression appeared rhythmic in 12-hr light/12-hr dark, but nonrhythmic in DD with intermediate levels. These results demonstrate that Cry1 and Cry2 are required for the normal expression of circadian behavioral rhythms, as well as circadian rhythms of mPer1 and mPer2 in the SCN. The differential regulation of mPer1 and mPer2 by light in Cry double mutants reveals a surprising complexity in the role of cryptochromes in mammals.


Subject(s)
Circadian Rhythm/genetics , Drosophila Proteins , Eye Proteins , Flavoproteins/physiology , Gene Expression Regulation , Nuclear Proteins/genetics , Photoreceptor Cells, Invertebrate , Animals , Cell Cycle Proteins , Cryptochromes , Genotype , Mice , Models, Biological , Models, Genetic , Mutagenesis , Period Circadian Proteins , Receptors, G-Protein-Coupled , Signal Transduction , Transcription Factors
17.
Cancer Res ; 59(16): 3968-71, 1999 Aug 15.
Article in English | MEDLINE | ID: mdl-10463593

ABSTRACT

Tumors exhibit a spectrum of cellular responses to chemotherapy ranging from extreme sensitivity to resistance, either intrinsic or acquired. These variable responses are both patient and tumor specific. For platinum DNA-damaging agents, drug resistance depends on the carrier ligand of the platinum complex and is due to a combination of mechanisms including DNA repair. Nucleotide excision repair is the only known mechanism by which bulky adducts, including those generated by platinum chemotherapeutic agents, are removed from DNA in human cells. In this report, we show that the types of DNA lesions generated by three platinum drugs, cisplatin, oxaliplatin, and (Bis-aceto-ammine-dichloro-cyclohexylamine-platinum(IV) (JM216), are repaired in vitro with similar kinetics by the mammalian nucleotide excision repair pathway.


Subject(s)
Antineoplastic Agents/pharmacology , Cisplatin/pharmacology , DNA Damage/drug effects , DNA Repair/drug effects , Organoplatinum Compounds/pharmacology , Animals , CHO Cells , Cricetinae , DNA Adducts/drug effects , Drug Resistance, Neoplasm , HeLa Cells , Humans , Oxaliplatin
18.
J Biol Chem ; 274(35): 24779-86, 1999 Aug 27.
Article in English | MEDLINE | ID: mdl-10455150

ABSTRACT

RNA polymerase II stalled at a lesion in the transcribed strand is thought to constitute a signal for transcription-coupled repair. Transcription factors that act on RNA polymerase in elongation mode potentially influence this mode of repair. Previously, it was shown that transcription elongation factors TFIIS and Cockayne's syndrome complementation group B protein did not disrupt the ternary complex of RNA polymerase II stalled at a thymine cyclobutane dimer, nor did they enable RNA polymerase II to bypass the dimer. Here we investigated the effect of the transcription factor 2 on RNA polymerase II and RNA polymerase I stalled at thymine dimers. Transcription factor 2 is known to release transcripts from RNA polymerase II early elongation complex generated by pulse-transcription. We found that factor 2 (which is also called release factor) disrupts the ternary complex of RNA polymerase II at a thymine dimer and surprisingly exerts the same effect on RNA polymerase I. These findings show that in mammalian cells a RNA polymerase I or RNA polymerase II transcript truncated by a lesion in the template strand may be discarded unless repair is accomplished rapidly by a mechanism that does not displace stalled RNA polymerases.


Subject(s)
Pyrimidine Dimers/genetics , RNA Polymerase II/metabolism , RNA Polymerase I/metabolism , Transcription Factors/metabolism , DNA Footprinting , DNA Helicases/metabolism , DNA Repair/genetics , DNA Repair Enzymes , DNA-Binding Proteins/metabolism , Deoxyribonuclease I , Humans , Oligodeoxyribonucleotides , Poly-ADP-Ribose Binding Proteins , Recombinant Proteins/genetics , Templates, Genetic
19.
J Biol Chem ; 274(26): 18759-68, 1999 Jun 25.
Article in English | MEDLINE | ID: mdl-10373492

ABSTRACT

Human excision nuclease removes DNA damage by concerted dual incisions bracketing the lesion. The dual incisions are accomplished by sequential and partly overlapping actions of six repair factors, RPA, XPA, XPC, TFIIH, XPG, and XPF.ERCC1. Of these, RPA, XPA, and XPC have specific binding affinity for damaged DNA. To learn about the role of these three proteins in damage recognition and the order of assembly of the excision nuclease, we measured the binding affinities of XPA, RPA, and XPC to a DNA fragment containing a single (6-4) photoproduct and determined the rate of damage excision under a variety of reaction conditions. We found that XPC has the highest affinity to DNA and that RPA has the highest selectivity for damaged DNA. Under experimental conditions conducive to binding of either XPA + RPA or XPC to damaged DNA, the rate of damage removal was about 5-fold faster for reactions in which XPA + RPA was the first damage recognition factor presented to DNA compared with reactions in which XPC was the first protein that had the opportunity to bind to DNA. We conclude that RPA and XPA are the initial damage sensing factors of human excision nuclease.


Subject(s)
DNA Repair , DNA-Binding Proteins/metabolism , RNA-Binding Proteins/metabolism , Transcription Factors, TFII , DNA Damage , DNA Footprinting , Electrophoresis, Polyacrylamide Gel , Humans , Macromolecular Substances , Replication Protein A , Transcription Factor TFIIH , Transcription Factors/metabolism , Xeroderma Pigmentosum Group A Protein
20.
Biochimie ; 81(1-2): 15-25, 1999.
Article in English | MEDLINE | ID: mdl-10214906

ABSTRACT

Nucleotide excision repair is both a 'wide spectrum' DNA repair pathway and the sole system for repairing bulky damages such as UV lesions or benzo[a]pyrene adducts. The mechanisms of nucleotide excision repair are known in considerable detail in Escherichia coli. Similarly, in the past 5 years important advances have been made towards understanding the biochemical mechanisms of excision repair in humans. The overall strategy of the repair is the same in the two species: damage recognition through a multistep mechanism involving a molecular matchmaker and an ATP-dependent unwinding of the damaged duplex; dual incisions at both sides of the lesion by two different nucleases, the 3' incision being followed by the 5'; removal of the damaged oligomer; resynthesis of the repair patch, whose length matches the gap size. Despite these similarities, the two systems are biochemically different and do not even share structural homology. E. coli excinuclease employs three proteins in contrast to 16/17 polypeptides in man; the excised fragment is longer in man: the procaryotic excinuclease is not able by itself to remove the excised oligomer whereas the human enzyme does. Thus, the excinuclease mode of action is well conserved throughout evolution, but not the biochemical tools: this represents a case of evolutionary convergence.


Subject(s)
DNA Repair , Escherichia coli/genetics , Humans , Species Specificity
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