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2.
Biochim Biophys Acta ; 1338(1): 137-44, 1997 Mar 07.
Article in English | MEDLINE | ID: mdl-9074624

ABSTRACT

The primary structure has been determined for PD-S2, a new type 1 ribosome-inactivating protein (RIP), isolated from the seeds of Phytolacca dioica L. PD-S2 has 265 amino-acid residues, and a molecular mass of 29586 Da. The polypeptide chain contains four amino-acid residues more than PAP-S, a type-I RIP isolated from the seeds of the taxonomically related plant Phytolacca americana L. We have compared the amino-acid sequence of PD-S2 with those of two other RIPs with known three-dimensional structure: PAP-S and ricin A-chain (RTA), the active chain of the best known type-2 RIP. This analysis shows an identity of 76% and 33% with PAP-S and RTA respectively, and a similarity of 82% and 54%. Comparison with the PAP sequence, isolated from leaves of P. americana, shows an even higher identity (80%) and similarity (87%). Furthermore, the amino-acid residues reported in other RIPs to be invariant and participate in the definition of the active site (Tyr-76, Tyr-127, Glu-179, Arg-182 and Trp-211; PD-S2 numbering) are all present. Asn-74, Arg-138, Gln-175, and Glu-208 are also conserved, while Asn-209 is substituted by Glu, all residues located in the active-site cleft of RIPs (Tahirov, T.H., Lu, T.-H., Liaw, Y.-C., Chen, J.L. and Lin, J.Y. (1995) Crystal structure of abrin-a at 2.14 A, J. Mol. Biol. 250, 354-367). The polypeptide chain of PD-S2 contains two N-glycosylation sites at Asn-112 and Asn-120, the second of which appears to be linked to sugars. Like PAP-S, PD-S2 does not contain free sulfhydryl groups. The four cysteinyl residues of the two proteins have corresponding sequence positions, most likely with identical S-S pairing.


Subject(s)
N-Glycosyl Hydrolases/chemistry , Plant Proteins/chemistry , Seeds/metabolism , Amino Acid Sequence , Binding Sites , Conserved Sequence , Cyanogen Bromide , Molecular Sequence Data , N-Glycosyl Hydrolases/isolation & purification , Peptide Fragments/chemistry , Peptide Fragments/isolation & purification , Plant Lectins , Plant Proteins/isolation & purification , Protein Conformation , Ribosome Inactivating Proteins, Type 1 , Ribosomes , Ricin/chemistry , Sequence Homology, Amino Acid , Software
3.
Biochim Biophys Acta ; 1216(1): 43-9, 1993 Oct 19.
Article in English | MEDLINE | ID: mdl-8218414

ABSTRACT

Three ribosome-inactivating proteins (RIPs) similar to those already known (Stirpe et al. (1992) Bio/Technology 10, 405-412) were purified from the seeds of Phytolacca dioica. These proteins, called Phytolacca dioica RIPs (PD-S1, PD-S2 and PD-S3 RIPs), are glycoproteins, with M(r) approx. 30,000, inhibit protein synthesis by a rabbit reticulocyte lysate and phenylalanine polymerization by isolated ribosomes, and depurinate rat liver rRNA in an apparently identical manner as the A-chain of ricin and other RIPs (Endo et al. (1987) J. Biol. Chem. 262, 5908-5912). Part of the purified rat liver ribosomes appeared resistant to the action of PD-S RIPs. The most abundant protein, PD-S2 RIP, gave a weak or nil cross-reaction with sera against various other RIPs, including a pokeweed antiviral protein from the roots of Phytolacca americana. PD-S2 RIP was linked to a monoclonal antibody (Ber-H2) against the CD30 human lymphocyte antigen and the resulting immunotoxin was selectively toxic to the CD30 + Hodgkin's lymphoma-derived L540 cell line.


Subject(s)
Glycoside Hydrolases/isolation & purification , Immunotoxins/isolation & purification , N-Glycosyl Hydrolases , Plant Proteins/isolation & purification , Ribosomes/metabolism , Seeds/chemistry , Amino Acid Sequence , Animals , Cell Line/drug effects , Female , Glycoside Hydrolases/chemistry , Glycoside Hydrolases/toxicity , Mice , Molecular Sequence Data , Plant Proteins/chemistry , Plant Proteins/toxicity , Protein Biosynthesis , Rabbits , Rats , Ribosome Inactivating Proteins, Type 1 , Ribosomes/drug effects , Saporins
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