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1.
Biochemistry ; 53(5): 862-71, 2014 Feb 11.
Article in English | MEDLINE | ID: mdl-24447265

ABSTRACT

PIR1 is an atypical dual-specificity phosphatase (DSP) that dephosphorylates RNA with a higher specificity than phosphoproteins. Here we report the atomic structure of a catalytically inactive mutant (C152S) of the human PIR1 phosphatase core (PIR1-core, residues 29-205), refined at 1.20 Šresolution. PIR1-core shares structural similarities with DSPs related to Vaccinia virus VH1 and with RNA 5'-phosphatases such as the baculovirus RNA triphosphatase and the human mRNA capping enzyme. The PIR1 active site cleft is wider and deeper than that of VH1 and contains two bound ions: a phosphate trapped above the catalytic cysteine C152 exemplifies the binding mode expected for the γ-phosphate of RNA, and ∼6 Šaway, a chloride ion coordinates the general base R158. Two residues in the PIR1 phosphate-binding loop (P-loop), a histidine (H154) downstream of C152 and an asparagine (N157) preceding R158, make close contacts with the active site phosphate, and their nonaliphatic side chains are essential for phosphatase activity in vitro. These residues are conserved in all RNA 5'-phosphatases that, analogous to PIR1, lack a "general acid" residue. Thus, a deep active site crevice, two active site ions, and conserved P-loop residues stabilizing the γ-phosphate of RNA are defining features of atypical DSPs that specialize in dephosphorylating 5'-RNA.


Subject(s)
Dual-Specificity Phosphatases/chemistry , Catalytic Domain , Crystallography, X-Ray , Dual-Specificity Phosphatases/genetics , Humans , Kinetics , Molecular Docking Simulation , Mutagenesis, Site-Directed , Protein Conformation , Protein Stability
2.
Biochem Biophys Res Commun ; 427(1): 18-23, 2012 Oct 12.
Article in English | MEDLINE | ID: mdl-22982540

ABSTRACT

The major bovine seminal plasma protein, PDC-109 exhibits chaperone-like activity (CLA) against a variety of target proteins. The present studies show that the homologous protein from equine seminal plasma, HSP-1/2 also exhibits CLA and inhibits the thermal aggregation of target proteins such as lactate dehydrogenase, and DTT-induced aggregation of insulin in a concentration-dependent manner. Phosphorylcholine binding inhibited the CLA of HSP-1/2, suggesting that aggregation state of the protein is important for this activity. These results demonstrate that HSP-1/2 functions as a molecular chaperone in vitro, and suggest that it may protect other proteins of equine seminal plasma from unfolding/misfolding or aggregation. These results suggest that homologous proteins from the seminal plasma of other mammals also exhibit CLA, which will be physiologically relevant.


Subject(s)
Carrier Proteins/metabolism , Glycoproteins/metabolism , Horses/metabolism , Molecular Chaperones/metabolism , Semen/metabolism , Seminal Plasma Proteins/metabolism , Animals , Carrier Proteins/antagonists & inhibitors , Carrier Proteins/chemistry , Dithiothreitol/chemistry , Dithiothreitol/pharmacology , Glucosephosphate Dehydrogenase/metabolism , Glycoproteins/antagonists & inhibitors , Glycoproteins/chemistry , Male , Molecular Chaperones/chemistry , Phosphorylcholine/pharmacology , Protein Folding , Protein Structure, Secondary , Protein Structure, Tertiary , Seminal Plasma Proteins/antagonists & inhibitors , Seminal Plasma Proteins/chemistry
3.
Biochemistry ; 49(18): 3908-18, 2010 May 11.
Article in English | MEDLINE | ID: mdl-20377251

ABSTRACT

The major protein of bovine seminal plasma, PDC-109, binds to choline phospholipids on the sperm plasma membrane and induces the efflux of cholesterol and choline phospholipids, which is an important step in sperm capacitation. The high abundance, polydisperse nature and reversibility of thermal unfolding of PDC-109 suggest significant similarities to chaperone-like proteins such as spectrin, alpha-crystallin, and alpha-synuclein. In the present study, biochemical and biophysical approaches were employed to investigate the chaperone-like activity of PDC-109. The effect of various stress factors such as high temperature, chemical denaturant (urea), and acidic pH on target proteins such as lactate dehydrogenase, alcohol dehydrogenase, and insulin were studied in both the presence and absence of PDC-109. The results obtained indicate that PDC-109 exhibits chaperone-like activity, as evidenced by its ability to suppress the nonspecific aggregation of target proteins and direct them into productive folding. Atomic force microscopic studies demonstrate that PDC-109 effectively prevents the fibrillation of insulin, which is of considerable significance since amyloidogenesis has been reported to be a serious problem during sperm maturation in certain species. Binding of phosphorylcholine or high ionic strength in the medium inhibited the chaperone-like activity of PDC-109, suggesting that most likely the aggregation state of the protein is important for the chaperone function. These observations show that PDC-109 functions as a molecular chaperone in vitro, suggesting that it may assist the proper folding of proteins involved in the bovine sperm capacitation pathway. To the best of our knowledge, this is the first study reporting chaperone-like activity of a seminal plasma protein.


Subject(s)
Molecular Chaperones/metabolism , Seminal Plasma Proteins/metabolism , Seminal Vesicle Secretory Proteins/metabolism , Animals , Cattle , Kinetics , Molecular Chaperones/chemistry , Protein Binding , Protein Stability , Semen/chemistry , Semen/metabolism , Seminal Plasma Proteins/chemistry , Seminal Vesicle Secretory Proteins/chemistry
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