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J Mol Graph Model ; 132: 108846, 2024 Nov.
Article in English | MEDLINE | ID: mdl-39151375

ABSTRACT

African swine fever (ASF) causes high mortality in pigs and threatens global swine production. There is still a lack of therapeutics available, with two vaccines under scrutiny and no approved small-molecule drugs. Eleven (11) viral proteins were used to identify potential antivirals in in silico screening of secondary metabolites (127) from Chlorella spp. The metabolites were screened for affinity and binding selectivity. High-scoring compounds were assessed through in silico ADMET (Absorption, Distribution, Metabolism, Excretion, Toxicity) predictions, compared to structurally similar drugs, and checked for off-target docking with prepared swine receptors. Molecular dynamics (MD) simulations determined binding stability while binding energy was measured in Molecular Mechanics - Generalized Born Surface Area (MMGBSA) or Poisson-Boltzmann Surface Area (MMPBSA). Only six (6) compounds passed until MD analyses, of which five (5) were stable after 100 ns of MD runs. Of these five compounds, only three had binding affinities that were comparable to or stronger than controls. Specifically, phytosterols 24,25-dihydrolanosterol and CID 4206521 that interact with the RNA capping enzyme (pNP868R), and ergosterol which bound to the Erv-like thioreductase (pB119L). The compounds identified in this study can be used as a theoretical basis for in vitro screening to develop potent antiviral drugs against ASFV.


Subject(s)
African Swine Fever Virus , Antiviral Agents , Chlorella , Molecular Docking Simulation , Molecular Dynamics Simulation , African Swine Fever Virus/drug effects , African Swine Fever Virus/chemistry , Antiviral Agents/pharmacology , Antiviral Agents/chemistry , Animals , Chlorella/chemistry , Swine , Viral Proteins/chemistry , Viral Proteins/antagonists & inhibitors , Viral Proteins/metabolism , Drug Evaluation, Preclinical
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