ABSTRACT
After publication, it was highlighted that the original publication [1] contained a spelling mistake in the first name of Marcelo Gattas. This was incorrectly captured as Marelo Gattass in the original article which has since been updated.
ABSTRACT
BACKGROUND: Age-related macular degeneration (AMD) is a degenerative ocular disease that develops by the formation of drusen in the macula region leading to blindness. This condition can be detected automatically by automated image processing techniques applied in spectral domain optical coherence tomography (SD-OCT) volumes. The most common approach is the individualized analysis of each slice (B-Scan) of the SD-OCT volumes. However, it ends up losing the correlation between pixels of neighboring slices. The retina representation by topographic maps reveals the similarity of these structures with geographic relief maps, which can be represented by geostatistical descriptors. In this paper, we present a methodology based on geostatistical functions for the automatic diagnosis of AMD in SD-OCT. METHODS: The proposed methodology is based on the construction of a topographic map of the macular region. Over the topographic map, we compute geostatistical features using semivariogram and semimadogram functions as texture descriptors. The extracted descriptors are then used as input for a Support Vector Machine classifier. RESULTS: For training of the classifier and tests, a database composed of 384 OCT exams (269 volumes of eyes exhibiting AMD and 115 control volumes) with layers segmented and validated by specialists were used. The best classification model, validated with cross-validation k-fold, achieved an accuracy of 95.2% and an AUROC of 0.989. CONCLUSION: The presented methodology exclusively uses geostatistical descriptors for the diagnosis of AMD in SD-OCT images of the macular region. The results are promising and the methodology is competitive considering previous results published in literature.
Subject(s)
Macular Degeneration/diagnostic imaging , Macular Degeneration/physiopathology , Retina/diagnostic imaging , Tomography, Optical Coherence , Aged , Aged, 80 and over , False Positive Reactions , Female , Humans , Image Processing, Computer-Assisted , Male , Middle Aged , ROC Curve , Reproducibility of Results , Retinal Pigment Epithelium/metabolism , Sensitivity and Specificity , Support Vector MachineABSTRACT
Histone H1 variants, known as linker histones, are essential chromatin components in higher eukaryotes, yet compared to the core histones relatively little is known about their in vivo functions. The filamentous fungus Neurospora crassa encodes a single H1 protein that is not essential for viability. To investigate the role of N. crassa H1, we constructed a functional FLAG-tagged H1 fusion protein and performed genomic and molecular analyses. Cell fractionation experiments showed that H1-3XFLAG is a chromatin binding protein. Chromatin-immunoprecipitation combined with sequencing (ChIP-seq) revealed that H1-3XFLAG is globally enriched throughout the genome with a subtle preference for promoters of expressed genes. In mammals, the stoichiometry of H1 impacts nucleosome repeat length. To determine if H1 impacts nucleosome occupancy or nucleosome positioning in N. crassa, we performed micrococcal nuclease digestion in the wild-type and the [Formula: see text]hH1 strain followed by sequencing (MNase-seq). Deletion of hH1 did not significantly impact nucleosome positioning or nucleosome occupancy. Analysis of DNA methylation by whole-genome bisulfite sequencing (MethylC-seq) revealed a modest but global increase in DNA methylation in the [Formula: see text]hH1 mutant. Together, these data suggest that H1 acts as a nonspecific chromatin binding protein that can limit accessibility of the DNA methylation machinery in N. crassa.
Subject(s)
DNA Methylation , Fungal Proteins/genetics , Gene Expression Regulation, Fungal , Genome, Fungal , Histones/genetics , Neurospora crassa/genetics , Chromatin Assembly and Disassembly , Fungal Proteins/metabolism , Neurospora crassa/metabolism , Nucleosomes/chemistry , Nucleosomes/metabolism , Oligopeptides/genetics , Oligopeptides/metabolism , Promoter Regions, Genetic , Protein Binding , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolismABSTRACT
Parasites of adult bees are almost exclusively flies and the most important of them are conopids. This note registers for the first time the association of species of Physocephala (Diptera: Conopidae) with Centris (Heterocentris) analis (Fabricius). From 26 females and nine males of the host species found dead inside trap-nests on the campus of the University of São Paulo, Ribeirão Preto, Brazil, 35 parasitoids were obtained belonging to nine species of Physocephala. The data show that C. analis is a host to several conopid flies, and suggest that such parasitoids can play an important role in population control of this bee species.
Subject(s)
Bees/parasitology , Diptera/physiology , AnimalsABSTRACT
Parasitas de abelhas adultas são quase exclusivamente moscas e dentre os mais importantes estão os conopídeos. Nesta comunicação relata-se pela primeira vez a associação de espécies de Physocephala (Diptera: Conopidae) com Centris (Heterocentris) analis (Fabricius). De uma amostra de 26 fêmeas e nove machos da espécie hospedeira encontrados mortos em ninhos-armadilha vazios, no campus da Universidade de São Paulo, Ribeirão Preto, SP, emergiram 35 parasitóides pertencentes a nove espécies de Physocephala. Os dados mostram que C. analis é hospedeiro para várias espécies de conopídeos e sugerem que tais parasitóides podem desempenhar um papel importante na regulação populacional dessa espécie de abelha.
Parasites of adult bees are almost exclusively flies and the most important of them are conopids. This note registers for the first time the association of species of Physocephala (Diptera: Conopidae) with Centris (Heterocentris) analis (Fabricius). From 26 females and nine males of the host species found dead inside trap-nests on the campus of the University of São Paulo, Ribeirão Preto, Brazil, 35 parasitoids were obtained belonging to nine species of Physocephala. The data show that C. analis is a host to several conopid flies, and suggest that such parasitoids can play an important role in population control of this bee species.
