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1.
Sci Rep ; 14(1): 3245, 2024 Feb 08.
Article in English | MEDLINE | ID: mdl-38331999

ABSTRACT

By performing isothermal-isochoric Monte Carlo simulations with depletion force, the author investigated the dependence of the epitxial layer structure on the differences in the particle size between the substrate in colloidal heteroepitaxy. By changing the size of epitaxial particles and performing simulations comprehensively, various structures including the structures observed in a experiment, such as a honeycomb, one created by hexagonal heptamers, and one consisting of both pentagonal tiles and triangular tiles, were created. When the ratio of particle sizes between the epitxial layer and substrate takes a specific value, two types of hexagonal structures were created. One is the hexagonal layer parallel to the substrate layer and the other layer is rotated by 60[Formula: see text] from the substrate layer. The former structure was created over a wide range of particle-size ratios, whereas the latter structure was created when the particle-size ratio was only around the specific ratio, and it seemed a metastable structure.

2.
ACS Omega ; 8(33): 30450-30458, 2023 Aug 22.
Article in English | MEDLINE | ID: mdl-37636963

ABSTRACT

When particles are constructed in thin systems between two parallel flat walls, structures that are not observed in bulk systems are created and the created structures change, depending on the width between the walls. In this study, the structures formed by particles constructed in thin systems were investigated through performing isothermal-isobaric Monte Carlo simulations, where the interaction between the particles is given by the hard-core square shoulder potential. By controlling the width of the shoulder-like repulsive interaction and the system width, several novel structures such as the connection of rhombuses and the square lattice of the (100) face of the body-centered cubic lattice were created.

3.
Langmuir ; 38(49): 15404-15412, 2022 Dec 13.
Article in English | MEDLINE | ID: mdl-36446728

ABSTRACT

Two-dimensional structures formed by spherical triblock patchy particles are examined by performing Monte Carlo simulations. In the model, the triblock patchy particles have two different types of patches at the polar positions. The patch sizes are different from each other, and the attractive interaction acts only between the same types of patches. The particles translate on a flat plane and rotate three-dimensionally. When varying the two patch sizes, the pressure, and interaction energy, various structures are observed. When the difference between two patch sizes is small, kagome lattices, hexagonal structures, and two-dimensional dodecagonal quasi-crystal structures are observed. When the difference between two patch sizes is large, chain-like structures are created. With lower temperature, sparse structures such as ring-like structures form.

4.
Sci Rep ; 12(1): 12370, 2022 Jul 20.
Article in English | MEDLINE | ID: mdl-35859116

ABSTRACT

The formation of [Formula: see text] type two-dimensional binary colloidal crystals was studied by performing Monte Carlo simulations with two different size particles. The effect of interactions between particles and between particles and a wall, and the particles size ratios on the formation of [Formula: see text] structure were examined. [Formula: see text] structures formed efficiently when the interaction between equivalently sized particles was smaller than that between differently sized particles. To create [Formula: see text] on a wall, it was necessary to choose a suitable particles size ratios, and the attraction between the particles and the wall was greater than that between particles.

5.
Proc Natl Acad Sci U S A ; 119(10): e2115955119, 2022 03 08.
Article in English | MEDLINE | ID: mdl-35238661

ABSTRACT

SignificanceStep-bunching instability (SBI) is one of the interfacial instabilities driven by self-organization of elementary step flow associated with crystal-growth dynamics, which has been observed in diverse crystalline materials. However, despite theoretical suggestions of its presence, no direct observations of SBI for simple melt growth have been achieved so far. Here, with the aid of a type of optical microscope and its combination with a two-beam interferometer, we realized quantitative in situ observations of the spatiotemporal dynamics of the SBI. This enables us to examine the origin of the SBI at the level of the step-step interaction. We also found that the SBI spontaneously induces a highly stable spiral growth mode, governing the late stage of the growth process.

6.
Sci Rep ; 11(1): 18078, 2021 Sep 10.
Article in English | MEDLINE | ID: mdl-34508134

ABSTRACT

Performing isothermal-isochoric Monte Carlo simulations, I examine the types of clusters that dumbbell-like one-patch particles form in thin space between two parallel walls, assuming that each particle is synthesized through the merging of two particles, one non-attracting and the other attracting for which, for example, the inter-particle interaction is approximated by the DLVO model . The shape of these dumbbell-like particles is controlled by the ratio of the diameters q of the two spherical particles and by the dimensionless distance l between these centers. Using a modified Kern-Frenkel potential, I examine the dependence of the cluster shape on l and q. Large island-like clusters are created when [Formula: see text]. With increasing q, the clusters become chain-like . When q increases further, elongated clusters and regular polygonal clusters are created. In the simulations, the cluster shape becomes three-dimensional with increasing l because the thickness of the thin system increases proportionally to l.

7.
Langmuir ; 37(14): 4213-4221, 2021 Apr 13.
Article in English | MEDLINE | ID: mdl-33780624

ABSTRACT

Considering that one-patch particles rotate three-dimensionally and translate on a two-dimensional flat plane, I performed isothermal-isochoric Monte Carlo simulations to study how two-dimensional self-assemblies formed by spherical patchy particles depending on the interaction length and patch area. As the interaction potential between one-patch particles, the Kern-Frenkel (KF) potential is used in the simulations. With increasing patch area, the shape of the most numerous clusters changes from dimers to island-like clusters with a square lattice via triangular trimers, square tetramers, and chain-like clusters when the interaction length is as long as the particle radius. With a longer interaction length, other shapes of polygonal clusters such as another type of square tetramers, two types of pentagonal pentamers, hexagonal hexamers, and hexagonal heptamers also form.

8.
ACS Omega ; 5(44): 28812-28822, 2020 Nov 10.
Article in English | MEDLINE | ID: mdl-33195934

ABSTRACT

Assuming that the interaction between particles is given by the Kern-Frenkel potential, Monte Carlo simulations are performed to study the clusters and structures formed by one-patch particles in a thin space between two parallel walls. In isothermal-isochoric systems with a short interaction length, tetrahedral tetramers, octahedral hexamers, and pentagonal dipyramidal heptamers are created with increasing patch area. In isothermal-isobaric systems, the double layers of a triangular lattice, which is the (111) face of the face-centered cubic (fcc) lattice, form when the pressure is high. For a long interaction length, a different type of cluster, trigonal prismatic hexamers, is created. The structures in the double layers also changed as follows: a simple hexagonal lattice or square lattice, which is the (100) face of the fcc structure, is created in isothermal-isobaric systems.

9.
Int J Biol Macromol ; 150: 1203-1212, 2020 May 01.
Article in English | MEDLINE | ID: mdl-31751729

ABSTRACT

A simple, facile and potential platform for enzyme immobilization using alginate-based beads has been demonstrated by simultaneous gelation and modification of alginate using calcium chloride (CaCl2) and 3-aminopropyltriethoxysilane (APTES). In this method, sodium alginate solution containing enzyme was simply dripped into a crosslinker solution containing CaCl2 and APTES, leading to the formation of APTES-alginate hybrid beads (AP-beads). The optical observation, FT-IR analysis and amino group measurements provided evidence that APTES was successfully adsorbed to the alginate chain via electrostatic interaction. On the assumption that the binding of Ca2+ ion to polymannuronate residues of alginate via bidentate bridging coordination is competitive with APTES, the equilibrium isotherm and kinetics for the adsorption of APTES to AP-beads was found to follow extended Langmuir isotherm in binary system. Formate dehydrogenase (FDH) as a model enzyme was successfully immobilized in AP-beads and the immobilization yield of ca. 100% could be achieved under optimal conditions of CaCl2 and APTES concentrations in crosslinker solution. Furthermore, the AP-beads were reused efficiently for 9 cycles without loss of FDH activity. The above results demonstrated that AP-beads were effective support for enzyme immobilization.


Subject(s)
Alginates/chemistry , Enzymes, Immobilized/chemistry , Formate Dehydrogenases/chemistry , Fungal Proteins/chemistry , Propylamines/chemistry , Saccharomycetales/enzymology , Silanes/chemistry , Kinetics
10.
Phys Rev E ; 97(6-1): 062801, 2018 Jun.
Article in English | MEDLINE | ID: mdl-30011545

ABSTRACT

In this paper, we study the effect of the evaporation of adatoms and impurities on the step bunching induced by impurity. Keeping the ratio of the impingement rate of impurities F_{imp} to that of atoms F constant, we carry out Monte Carlo simulation. In the system with the evaporation of impurities, the growth rate of vicinal face R is proportional to F. This relation is the same as that without the evaporation of impurities. When F is small, the vicinal face is unstable. Compared with the system without the evaporation of impurities, the effect of impurities is weakened. In our simulation, step pairing occurs but large bunches are not formed. When we take account of the evaporation of both impurities and adatoms, the vicinal face grows when F is larger than the equilibrium value F_{eq}. R is not proportional to (F-F_{eq}) and large bunches are formed when F is small. In this paper, we also show how the impurity density on surface σ_{imp} and that incorporated in solid ρ_{imp} are related to the formation of step bunches.

11.
Phys Rev E ; 95(3-1): 032803, 2017 Mar.
Article in English | MEDLINE | ID: mdl-28415233

ABSTRACT

We carry out phase field simulations to study properties of the comblike step patterns induced by an adatom source. When an adatom source advances right in front of a step, step wandering is caused by the asymmetry of the surface diffusion field and small protrusions are formed. If the velocity of the source V_{p} is smaller than a critical value V_{p}^{c}, the protrusions follow the adatom source with coarsening of the step pattern, and a regular comblike pattern with finger-like protrusions is formed. With a sufficiently small V_{p}, the gap of the supersaturation is large at the adatom source. Since the period of protrusions, Λ, decreases with increasing V_{p}, the coarsening of step pattern is irrelevant for the protrusions to catch up with the adatom source. Near V_{p}^{c}, the gap of the supersaturation at the adatom source is small. Taking account of the increase in Λ with increasing V_{p}, the coarsening of the step pattern is essential for the protrusions to follow the adatom source.

12.
Article in English | MEDLINE | ID: mdl-25679630

ABSTRACT

Pattern formation of a step on a growing crystal surface induced by a straight line source of atoms, which is escaping from the step at a velocity V(p), is studied with the use of a phase field model. From a straight step, fluctuations of the most unstable wavelength λ(max) grow. Competition of intrusions leads to coarsening of the pattern, and survived intrusions grow exponentially. With sufficient strength of the crystal anisotropy, a regular comblike pattern appears. This peculiar step pattern is similar to that observed on a Ga-deposited Si(111) surface. The final period of the intrusions, Λ, is determined when the exponential growth ends. The period depends on the strength F(u) of a current noise in diffusion as Λ∼λ(max)|lnF(u)|: such a logarithmic dependence is confirmed for the first time. A nonmonotonic V(p) dependence of Λ indicates that the comblike pattern with a small V(p) is related to an unstable growth mode of the free needle growth in a channel. The pattern is stabilized by the guiding linear source.

13.
Article in English | MEDLINE | ID: mdl-25314454

ABSTRACT

Keeping formation of a colloidal crystal by a centrifugal force in mind, we carry out Brownian dynamics simulations in thin systems and study ordering of particles induced by an external force. During solidification, the two-dimensional ordering along walls initially occurs. Then, the ordered particles on the walls act as substrates, and crystallization proceeds into bulk. When the external force is weak, the close-packed face of the crystal structure is parallel to the bottom wall. The direction of the close-packed face depends on the strength of the external force: The close-packed face becomes parallel to the side walls with a strong external force.


Subject(s)
Molecular Dynamics Simulation , Acceleration , Crystallization , Molecular Conformation , Polystyrenes/chemistry
14.
Article in English | MEDLINE | ID: mdl-24827254

ABSTRACT

We carry out Brownian dynamics simulations and study the ordering of particles under a uniform external force in a narrow system. In our previous studies [M. Sato et al., Phys. Rev. E 87, 032403 (2013); J. Phys. Soc. Jpn. 82, 084804 (2013)], we showed that the ordering of particles depends on the direction of the external force. In the studies, however, the system size and the number of particles are small, so the behaviors we observed corresponds to the motions in the initial stage of crystallization. In this paper, using a longer container and more particles, we investigate how solidification in a narrow system proceeds. We also study the effect of the shape of simulation box on the ordering of particles. When we use a rhomboid as a simulation box, the ratio of the particles with the face-centered cubic structure to those with the hexagonal close-packed structure is larger than that in a cuboid system.

15.
Ann Plast Surg ; 73(1): 98-101, 2014 Jul.
Article in English | MEDLINE | ID: mdl-23348394

ABSTRACT

We examined the changes in blood flow in the femoral artery caused by botulinum toxin A in rats. Blood flow was measured using laser Doppler flowmetry. We used male Sprague-Dawley-derived rats weighing between 350 and 400 g. The study was performed on 6 groups; each of them consisted of 30 rats (control and botulinum toxin A 0.5, 1, 2, 4, and 8 units). The laser Doppler flowmetry revealed that blood flow in the femoral artery increased by the third day in the groups injected with 1 or more units of botulinum toxin A. In the groups injected with 8 units of botulinum toxin A, we recognized an increase of blood flow from the second day. Our results suggest that botulinum toxin A is concerned in improving blood flow.


Subject(s)
Acetylcholine Release Inhibitors/pharmacology , Botulinum Toxins, Type A/pharmacology , Femoral Artery/physiology , Regional Blood Flow/drug effects , Animals , Laser-Doppler Flowmetry , Male , Rats , Rats, Sprague-Dawley
16.
J Craniomaxillofac Surg ; 41(8): 783-8, 2013 Dec.
Article in English | MEDLINE | ID: mdl-23466122

ABSTRACT

BACKGROUND: In Japan we currently use absorption properties for facial fractures. OSTEOTRANS MX(®) (Takiron co., ltd, Japan) is an absorption device, which is called Super FIXSORB MX(®) in Japan. This absorbable osteosynthetic device constitutes unsintered hydroxyapatite particles/poly l-lactide (u-HA/PLLA) composites. This study focuses on reporting clinical cases of using OSTEOTRANS MX(®). MATERIALS AND METHODS: Seventeen patients (16 men and 1 woman) aged 10-80 years (mean: 39.9 years, SD: ±20.7) with 86 fracture sites were treated. In all cases we used 1.0 mm plates and 5 mm or 7 mm screws. The postoperative observation period was 6-60 months (mean: 21.8 months, SD: ±14.5). RESULTS: The fracture site recovered in all cases. Complications included one bone excess on the forehead and one foreign-body reaction on the frontozygomatic suture, but the fracture sites were recovered and had no problems. In the case with the longest observation time 60 months, the plate was almost fully absorbed. However, in other cases the plate was not fully absorbed because of a shorter observation time. CONCLUSION: OSTEOTRANS MX(®) is a useful device because of its suitable intensity, thinness, radiopaque, and few complications. A longer observation time is required for a plate to be absorbed completely.


Subject(s)
Durapatite/chemistry , Facial Bones/injuries , Orthopedic Fixation Devices , Polyesters/chemistry , Skull Fractures/surgery , Absorbable Implants , Adolescent , Adult , Aged , Aged, 80 and over , Bone Plates , Bone Screws , Child , Equipment Design , Facial Bones/surgery , Female , Follow-Up Studies , Fracture Fixation, Internal/instrumentation , Frontal Bone/injuries , Humans , Male , Middle Aged , Nasal Cavity/injuries , Orbital Fractures/surgery , Young Adult , Zygomatic Fractures/surgery
17.
Bioresour Technol ; 135: 652-8, 2013 May.
Article in English | MEDLINE | ID: mdl-23265817

ABSTRACT

This study has demonstrated that microcapsules can be used as a microreactor for the transesterification of rapeseed oil with calcium oxide (CaO) base catalyst. CaO-loaded microcapsules were prepared by coextrusion technique, and the transesterification reaction was carried out by adding methanol into the prepared microcapsules and oil in a batch-type reactor. Results showed that the microcapsules system could promote the transesterification and hinder the dissolution of the catalyst, in contrast to a biodiesel production with CaO particles. The optimal conditions for methanol to oil molar ratio, catalyst content in the microcapsules and reaction temperature were found to be 8:1, 20 wt.%, and 65 °C, respectively. The results of reusability tests showed that CaO-loaded microcapsules could be successfully reused for three times without loss of the catalytic activity. It was concluded from these results that microcapsules have the potential to improve the performance of solid base catalyst for biodiesel production.


Subject(s)
Capsules/chemistry , Methane/metabolism , Plant Oils/metabolism , Calcium Compounds/pharmacology , Catalysis/drug effects , Esterification/drug effects , Esters/metabolism , Fatty Acids, Monounsaturated , Methanol/metabolism , Oxides/pharmacology , Rapeseed Oil , Recycling , Temperature
18.
Phys Rev E Stat Nonlin Soft Matter Phys ; 85(6 Pt 2): 066102, 2012 Jun.
Article in English | MEDLINE | ID: mdl-23005157

ABSTRACT

We study group chasing and escaping between three species. In our model, one species acts as a group of chasers for another species and acts as a group of targets for the third species. When a particle is caught by a target, the particle becomes a new chaser. Although the ratio of three species is changed, the total number of particles is conserved. When particles move randomly, the numbers of the three species change periodically but no species seems to become extinct. If particles escape from the nearest chaser and chase the nearest target, the extinction of a species occurs. The extinction induces that of the second species and finally only one species survives.


Subject(s)
Escape Reaction/physiology , Models, Biological , Population Dynamics , Predatory Behavior/physiology , Animals , Computer Simulation , Humans
19.
J Agric Food Chem ; 60(6): 1548-54, 2012 Feb 15.
Article in English | MEDLINE | ID: mdl-22251057

ABSTRACT

Beer foam stability is an important characteristic. It has been suggested that isoforms of protein Z, that is, protein Z4 and protein Z7, contribute to beer foam stability. We investigated the relationship between beer foam stability and protein Z4 and protein Z7 using their deficient mutants. As a protein Z4-deficient mutant, cv. Pirkka was used. Protein Z7 deficiency was screened in 1564 barley accessions in the world collection of Okayama University, Japan. The barley samples from normal, protein Z4-deficient, protein Z7-deficient, and double-deficient were genotyped in F(2) populations and then pooled based on the DNA marker genotypes of protein Z4 and protein Z7. For a brewing trial, F(5) pooled subpopulations were used. After malting and brewing, the foam stability was determined, and the results showed that the levels of foam stability in the four samples were comparable. Two-dimensional gel electrophoresis was used to investigate the proteome in these beer samples. The results showed that low molecular weight proteins, including lipid transfer protein (LTP2), in the deficient mutants were higher than those in the normal sample. Our results suggest that the contribution of protein Z4 and protein Z7 to beer foam stability was not greater than that of other beer proteins.


Subject(s)
Beer/analysis , Hordeum/chemistry , Mutation , Plant Proteins/genetics , Serine Proteinase Inhibitors/genetics , Food Handling/methods , Plant Proteins/physiology , Seeds/chemistry , Serine Proteinase Inhibitors/physiology
20.
Ultrason Sonochem ; 19(4): 750-5, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22230100

ABSTRACT

In this paper, we report the synthesis of silica coated ZnO nanoparticles by ultrasound irradiation of a mixture of dispersion of ZnO, tetraethoxysilane (TEOS), and ammonia in an ethanol-water solution medium. The silica coating layer formed at the initial TEOS/ZnO loading of 0.8 for 60 min ultrasonic irradiation was uniform and extended up to 3 nm from the ZnO surface as revealed from HR-TEM images. Silica coated ZnO nanoparticles demonstrated a significant inhibition of photocatalytic activity against photodegradation of methylene blue dye in aqueous solution. The effects of silica coating on the UV blocking property of ZnO nanoparticles were also studied.


Subject(s)
Nanoparticles/chemistry , Silicon Dioxide/chemistry , Sonication , Zinc Oxide/chemistry , Catalysis , Optical Phenomena , Particle Size , Photochemical Processes , Surface Properties
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