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1.
Biochim Biophys Acta Mol Cell Biol Lipids ; 1864(5): 704-714, 2019 05.
Article in English | MEDLINE | ID: mdl-30769094

ABSTRACT

X-linked adrenoleukodystrophy (X-ALD), the most frequent peroxisomal disorder, is associated with mutation in the ABCD1 gene which encodes a peroxisomal ATP-binding cassette transporter for very long-chain fatty acids (VLCFA). The biochemical hallmark of the disease is the accumulation of VLCFA. Peroxisomal defect in microglia being now considered a priming event in the pathology, we have therefore generated murine microglial cells mutated in the Abcd1 gene and its closest homolog, the Abcd2 gene. Using CRISPR/Cas9 gene editing strategy, we obtained 3 cell clones with a single or double deficiency. As expected, only the combined absence of ABCD1 and ABCD2 proteins resulted in the accumulation of VLCFA. Ultrastructural analysis by electron microscopy revealed in the double mutant cells the presence of lipid inclusions similar to those observed in brain macrophages of patients. These observations are likely related to the increased level of cholesterol and the accumulation of neutral lipids that we noticed in mutant cells. A preliminary characterization of the impact of peroxisomal defects on the expression of key microglial genes such as Trem2 suggests profound changes in microglial functions related to inflammation and phagocytosis. The expression levels of presumed modifier genes have also been found modified in mutant cells, making these novel cell lines relevant for use as in vitro models to better understand the physiopathogenesis of X-ALD and to discover new therapeutic targets.


Subject(s)
ATP Binding Cassette Transporter, Subfamily D, Member 1/genetics , ATP Binding Cassette Transporter, Subfamily D/genetics , Adrenoleukodystrophy/genetics , ATP Binding Cassette Transporter, Subfamily D/metabolism , ATP Binding Cassette Transporter, Subfamily D, Member 1/metabolism , Adrenoleukodystrophy/metabolism , Adrenoleukodystrophy/pathology , Animals , CRISPR-Cas Systems , Cell Line , Fatty Acids/metabolism , Female , Gene Deletion , Mice, Inbred C57BL , Microglia/metabolism , Microglia/pathology
2.
Biochim Biophys Acta Mol Cell Biol Lipids ; 1864(4): 567-576, 2019 04.
Article in English | MEDLINE | ID: mdl-30312667

ABSTRACT

Acyl-CoA oxidase 1 (ACOX1) deficiency is a rare and severe peroxisomal leukodystrophy associated with a very long-chain fatty acid (VLCFA) ß-oxidation defect. This neurodegenerative disease lacks relevant cell models to further decipher the pathomechanisms in order to identify novel therapeutic targets. Since peroxisomal defects in microglia appear to be a key component of peroxisomal leukodystrophies, we targeted the Acox1 gene in the murine microglial BV-2 cell line. Using CRISPR/Cas9 gene editing, we generated an Acox1-deficient cell line and validated the allelic mutations, which lead to the absence of ACOX1 protein and enzymatic activity. The activity of catalase, the enzyme degrading H2O2, was increased, likely in response to the alteration of redox homeostasis. The mutant cell line grew more slowly than control cells without obvious morphological changes. However, ultrastructural analysis revealed an increased number of peroxisomes and mitochondria associated with size reduction of mitochondria. Changes in the distribution of lipid droplets containing neutral lipids have been observed in mutant cells; lipid analysis revealed the accumulation of saturated and monounsaturated VLCFA. Besides, expression levels of genes encoding interleukin-1 beta and 6 (IL-1ß and IL-6), as well as triggering receptor expressed on myeloid cells 2 (Trem2) were found modified in the mutant cells suggesting modification of microglial polarization and phagocytosis ability. In summary, this Acox1-deficient cell line presents the main biochemical characteristics of the human disease and will serve as a promising model to further investigate the consequences of a specific microglial peroxisomal ß-oxidation defect on oxidative stress, inflammation and cellular functions.


Subject(s)
Acyl-CoA Oxidase/deficiency , Microglia/cytology , Models, Biological , Mutation , Neurodegenerative Diseases/genetics , Acyl-CoA Oxidase/genetics , Animals , CRISPR-Cas Systems , Cell Line , Cell Proliferation , Fatty Acids/metabolism , Fatty Acids, Unsaturated/metabolism , Gene Editing , Hydrogen Peroxide/metabolism , Mice , Microglia/metabolism , Oxidative Stress
3.
Agric Syst ; 155: 213-224, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28701814

ABSTRACT

The improvement and application of pest and disease models to analyse and predict yield losses including those due to climate change is still a challenge for the scientific community. Applied modelling of crop diseases and pests has mostly targeted the development of support capabilities to schedule scouting or pesticide applications. There is a need for research to both broaden the scope and evaluate the capabilities of pest and disease models. Key research questions not only involve the assessment of the potential effects of climate change on known pathosystems, but also on new pathogens which could alter the (still incompletely documented) impacts of pests and diseases on agricultural systems. Yield loss data collected in various current environments may no longer represent a adequate reference to develop tactical, decision-oriented, models for plant diseases and pests and their impacts, because of the ongoing changes in climate patterns. Process-based agricultural simulation modelling, on the other hand, appears to represent a viable methodology to estimate the impacts of these potential effects. A new generation of tools based on state-of-the-art knowledge and technologies is needed to allow systems analysis including key processes and their dynamics over appropriate suitable range of environmental variables. This paper offers a brief overview of the current state of development in coupling pest and disease models to crop models, and discusses technical and scientific challenges. We propose a five-stage roadmap to improve the simulation of the impacts caused by plant diseases and pests; i) improve the quality and availability of data for model inputs; ii) improve the quality and availability of data for model evaluation; iii) improve the integration with crop models; iv) improve the processes for model evaluation; and v) develop a community of plant pest and disease modelers.

4.
Phytopathology ; 107(10): 1109-1122, 2017 10.
Article in English | MEDLINE | ID: mdl-28643581

ABSTRACT

Scenario analysis constitutes a useful approach to synthesize knowledge and derive hypotheses in the case of complex systems that are documented with mainly qualitative or very diverse information. In this article, a framework for scenario analysis is designed and then, applied to global wheat health within a timeframe from today to 2050. Scenario analysis entails the choice of settings, the definition of scenarios of change, and the analysis of outcomes of these scenarios in the chosen settings. Three idealized agrosystems, representing a large fraction of the global diversity of wheat-based agrosystems, are considered, which represent the settings of the analysis. Several components of global changes are considered in their consequences on global wheat health: climate change and climate variability, nitrogen fertilizer use, tillage, crop rotation, pesticide use, and the deployment of host plant resistances. Each idealized agrosystem is associated with a scenario of change that considers first, a production situation and its dynamics, and second, the impacts of the evolving production situation on the evolution of crop health. Crop health is represented by six functional groups of wheat pathogens: the pathogens associated with Fusarium head blight; biotrophic fungi, Septoria-like fungi, necrotrophic fungi, soilborne pathogens, and insect-transmitted viruses. The analysis of scenario outcomes is conducted along a risk-analytical pattern, which involves risk probabilities represented by categorized probability levels of disease epidemics, and risk magnitudes represented by categorized levels of crop losses resulting from these levels of epidemics within each production situation. The results from this scenario analysis suggest an overall increase of risk probabilities and magnitudes in the three idealized agrosystems. Changes in risk probability or magnitude however vary with the agrosystem and the functional groups of pathogens. We discuss the effects of global changes on the six functional groups, in terms of their epidemiology and of the crop losses they cause. Scenario analysis enables qualitative analysis of complex systems, such as plant pathosystems that are evolving in response to global changes, including climate change and technology shifts. It also provides a useful framework for quantitative simulation modeling analysis for plant disease epidemiology.


Subject(s)
Fungi/physiology , Models, Theoretical , Plant Diseases/prevention & control , Triticum/microbiology , Climate Change , Computer Simulation , Crops, Agricultural , Plant Diseases/microbiology , Plant Diseases/statistics & numerical data , Risk , Triticum/physiology
5.
Acta Physiol (Oxf) ; 219(4): 790-802, 2017 04.
Article in English | MEDLINE | ID: mdl-27364224

ABSTRACT

AIM: Evidence that brain-derived neurotrophic factor (BDNF), a neurotrophin largely involved in cognition, is expressed by cerebral endothelial cells led us to explore in rats the contribution of the cerebral microvasculature to BDNF found in brain tissue and the link between cerebrovascular nitric oxide (NO) and BDNF production. METHODS: Brain BDNF protein levels were measured before and after in situ removal of the cerebral endothelium that was achieved by brain perfusion with a 0.2% CHAPS (3-[(3-cholamidopropyl) dimethylammonio]-1-propane sulphonate) solution. BDNF protein and mRNA levels as well as levels of endothelial NO synthase phosphorylated at serine 1177 (P-eNOSser1177 ) were measured in cerebral microvessel-enriched fractions. These fractions were also exposed to glycerol trinitrate. Hypertension (spontaneously hypertensive rats) and physical exercise training were used as experimental approaches to modulate cerebrovascular endothelial NO production. RESULTS: CHAPS perfusion resulted in a marked decrease in brain BDNF levels. Hypertension decreased and exercise increased P-eNOSser1177 and BDNF protein levels. However, BDNF mRNA levels that were increased by exercise did not change after hypertension. Finally, in vitro exposure of cerebral microvessel-enriched fractions to glycerol trinitrate enhanced BDNF production. CONCLUSION: These data reveal that BDNF levels measured in brain homogenates correspond for a large part to BDNF present in cerebral endothelial cells and that cerebrovascular BDNF production is dependent on cerebrovascular endothelial eNOS activity. They provide a paradigm shift in the cellular source of brain BDNF and suggest a new approach to improve our understanding of the link between endothelial function and cognition.


Subject(s)
Brain-Derived Neurotrophic Factor/metabolism , Brain/metabolism , Endothelial Cells/metabolism , Microvessels/metabolism , Animals , Blotting, Western , Brain/blood supply , Immunohistochemistry , Nitric Oxide/metabolism , Polymerase Chain Reaction , Rats , Rats, Inbred SHR , Rats, Wistar
6.
Biochimie ; 98: 102-10, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24060512

ABSTRACT

Peroxisomes are essential organelles in higher eukaryotes as they play a major role in numerous metabolic pathways and redox homeostasis. Some peroxisomal abnormalities, which are often not compatible with life or normal development, were identified in severe demyelinating and neurodegenerative brain diseases. The metabolic roles of peroxisomes, especially in the brain, are described and human brain peroxisomal disorders resulting from a peroxisome biogenesis or a single peroxisomal enzyme defect are listed. The brain abnormalities encountered in these disorders (demyelination, oxidative stress, inflammation, cell death, neuronal migration, differentiation) are described and their pathogenesis are discussed. Finally, the contribution of peroxisomal dysfunctions to the alterations of brain functions during aging and to the development of Alzheimer's disease is considered.


Subject(s)
Brain/metabolism , Peroxisomal Disorders/physiopathology , Peroxisomes/metabolism , Aging , Alzheimer Disease/physiopathology , Animals , Cell Death , Cell Differentiation/physiology , Cell Movement , Demyelinating Diseases/physiopathology , Encephalitis/physiopathology , Humans , Mice , Neurodegenerative Diseases/metabolism , Oxidative Stress
7.
Neuroscience ; 213: 1-18, 2012 Jun 28.
Article in English | MEDLINE | ID: mdl-22521832

ABSTRACT

X-linked adrenoleukodystrophy (X-ALD) and pseudo neonatal adrenoleukodystrophy (P-NALD) are neurodegenerative demyelinating diseases resulting from the functional loss of the peroxisomal ATP-binding cassette transporter D (ABCD1) and from single peroxisomal enzyme deficiency (Acyl-CoA oxidase1: ACOX1), respectively. As these proteins are involved in the catabolism of very long chain fatty acids (VLCFA: C24:0, C26:0), X-ALD and P-NALD patients are characterized by the accumulation of VLCFA in plasma and tissues. Since peroxisomes are involved in the metabolism of reactive oxygen species (ROS) and nitrogen species (RNS), we examined the impact of VLCFA on the oxidative status of 158N murine oligodendrocytes expressing or not Abcd1 or Acox1. VLCFA triggers an oxidative stress characterized by an overproduction of ROS and RNS associated with lipid peroxidation, protein carbonylation, increased superoxide dismutase (SOD) activity, decreased catalase activity and glutathione level. SiRNA knockdown of Abcd1 or Acox1 increased ROS and RNS production even in the absence of VLCFA, and especially potentialized VLCFA-induced ROS overproduction. Moreover, mainly in cells with reduced Acox1 level, the levels of VLCFA and neutral lipids were strongly enhanced both in untreated and VLCFA - treated cells. Our data obtained on 158N murine oligodendrocytes highlight that VLCFA induce an oxidative stress, and demonstrate that Abcd1 or Acox1 knockdown contributes to disrupt RedOx equilibrium supporting a link between oxidative stress and the deficiency of Abcd1 or Acox1 peroxisomal proteins.


Subject(s)
ATP-Binding Cassette Transporters/metabolism , Acyl-CoA Oxidase/metabolism , Fatty Acids/metabolism , Oligodendroglia/metabolism , Oxidative Stress/physiology , RNA Interference , ATP Binding Cassette Transporter, Subfamily D, Member 1 , ATP-Binding Cassette Transporters/genetics , Acyl-CoA Oxidase/genetics , Adrenoleukodystrophy/genetics , Adrenoleukodystrophy/metabolism , Animals , Blotting, Western , Cells, Cultured , Fatty Acids/pharmacology , Flow Cytometry , Gas Chromatography-Mass Spectrometry , Gene Knockdown Techniques , Mice , Oligodendroglia/drug effects , Oxidation-Reduction , Peroxisomes/metabolism , Reactive Oxygen Species/metabolism , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Transfection
8.
Phytopathology ; 101(6): 696-709, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21261467

ABSTRACT

Plant disease epidemiology requires expansion of its current methodological and theoretical underpinnings in order to produce full contributions to global food security and global changes. Here, we outline a framework which we applied to farmers' field survey data set on rice diseases in the tropical and subtropical lowlands of Asia. Crop health risks arise from individual diseases, as well as their combinations in syndromes. Four key drivers of agricultural change were examined: labor, water, fertilizer, and land availability that translate into crop establishment method, water shortage, fertilizer input, and fallow period duration, respectively, as well as their combinations in production situations. Various statistical approaches, within a hierarchical structure, proceeding from higher levels of hierarchy (production situations and disease syndromes) to lower ones (individual components of production situations and individual diseases) were used. These analyses showed that (i) production situations, as wholes, represent very large risk factors (positive or negative) for occurrence of disease syndromes; (ii) production situations are strong risk factors for individual diseases; (iii) drivers of agricultural change represent strong risk factors of disease syndromes; and (iv) drivers of change, taken individually, represent small but significant risk factors for individual diseases. The latter analysis indicates that different diseases are positively or negatively associated with shifts in these drivers. We also report scenario analyses, in which drivers of agricultural change are varied in response to possible climate and global changes, generating predictions of shifts in rice health risks. The overall set of analyses emphasizes the need for large-scale ground data to define research priorities for plant protection in rapidly evolving contexts. They illustrate how a structured theoretical framework can be used to analyze emergent features of agronomic and socioecological systems. We suggest that the concept of "disease syndrome" can be borrowed in botanical epidemiology from public health to emphasize a holistic view of disease in shifting production situations in combination with the conventional, individual disease-centered perspective.


Subject(s)
Agriculture , Climate Change , Crops, Agricultural/physiology , Oryza/physiology , Plant Diseases/prevention & control , Agriculture/trends , Asia , Bayes Theorem , Forecasting , Logistic Models , Models, Biological , Models, Statistical , Plant Diseases/statistics & numerical data , Risk Factors , Tropical Climate
9.
Phytopathology ; 98(5): 571-9, 2008 May.
Article in English | MEDLINE | ID: mdl-18943225

ABSTRACT

Farmers' field survey data sets represent extremely valuable information, often having a heterogeneous data format. A large number of methods are available to process this kind of information, which may be combined to address successive, connected hypotheses, with definite objectives. The National Grapevine Trunk Diseases Survey was established in France in order to monitor and analyze the importance and progress of several grapevine diseases, in particular Eutypa dieback and Esca decline. Here we report a first series of analyses pertaining to the years 2003 to 2005 to characterize the incidences of the two diseases, as well as grapevine mortality, in relation to grapevine age, crop management, cultivars, and growing regions. Information representing 256 individual vineyards indicated mean incidences of 2.23 and 3.25% for Eutypa dieback and Esca decline, respectively. A combination of approaches (hierarchical cluster analysis, multiple correspondence analyses, and binomial logistic regressions) indicated distinct patterns of variation in the incidences of the two diseases according to crop management practices; limited linkage of specific crop management practices with diseases, especially Esca decline; a shared contribution of both diseases to mortality; and a weak linkage of the (now banned) arsenite-based pesticides with reduced Esca decline symptoms, but no such association with grapevine mortality. Differences and complementarities of the analytical approaches are discussed, as well as the implications of these analyses on grapevine health.


Subject(s)
Plant Diseases/microbiology , Vitis/microbiology , Crops, Agricultural/microbiology , France , Geography , Logistic Models , Wood/microbiology
10.
Phytopathology ; 98(1): 38-44, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18943236

ABSTRACT

Comparatively little quantitative information is available on both the spatial and temporal relationships that develop between airborne inoculum and disease intensity during the course of aerially spread epidemics. Botrytis leaf blight and Botrytis squamosa airborne inoculum were analyzed over space and time during 2 years (2002 and 2004) in a nonprotected experimental field, using a 6 x 8 lattice of quadrats of 10 x 10 m each. A similar experiment was conducted in 2004 and 2006 in a commercial field managed for Botrytis leaf blight using a 5 x 5 lattice of quadrats of 25 x 25 m each. Each quadrat was monitored weekly for lesion density (LD) and aerial conidium concentration (ACC). The adjustment of the Taylor's power law showed that heterogeneity in both LD and ACC generally increased with increasing mean. Unmanaged epidemics were characterized in either year, with aggregation indices derived from SADIE (Spatial Analysis by Distance Indices). For LD, the aggregation indices suggested a random pattern of disease early in the season, followed by an aggregated pattern in the second part of the epidemic. The index of aggregation for ACC in 2002 was significantly greater than 1 at only one date, while it was significantly greater than 1 at most sampling dates in 2004. In both years and for both variables, positive trends in partial autocorrelation were observed mainly for a spatial lag of 1. In 2002, the overall pattern of partial autocorrelations over sampling dates was similar for LD and ACC with no significant partial autocorrelation during the first part of the epidemic, followed by a period with significant positive autocorrelation, and again no autocorrelation on the last three sampling dates. In 2004, there was no significant positive autocorrelation for LD at most sampling dates while for ACC, there was a fluctuation between significant and non-significant positive correlation over sampling dates. There was a significant spatial correlation between ACC at given date (t(i)) and LD 1 week later (t(i + 1)) on most sampling dates in both 2002 and 2004 for the unmanaged and managed sites. It was concluded that LD and ACC were not aggregated in the early stage of epidemics, when both disease intensity and airborne conidia concentration were low. This was supported by the analysis of LD and ACC from a commercial field, where managed levels of disease were low, and where no aggregation of both variables was detected. It was further concluded that a reliable monitoring of airborne inoculum for management of Botrytis leaf blight is achievable in managed fields using few spore samplers per field.


Subject(s)
Botrytis/physiology , Onions/microbiology , Plant Diseases/microbiology , Botrytis/drug effects , Demography , Fungicides, Industrial/pharmacology , Maneb/pharmacology , Time Factors , Zineb/pharmacology
11.
Biochimie ; 89(11): 1312-21, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17686565

ABSTRACT

X-linked adrenoleukodystrophy (X-ALD) is a neurodegenerative disease caused by mutations in the ABCD1 gene, which encodes a peroxisomal ABC transporter, ALDP, supposed to participate in the transport of very long chain fatty acids (VLCFA). The adrenoleukodystrophy-related protein (ALDRP), which is encoded by the ABCD2 gene, is the closest homolog of ALDP and is considered as a potential therapeutic target since functional redundancy has been demonstrated between the two proteins. Pharmacological induction of Abcd2 by fibrates through the activation of PPARalpha has been demonstrated in rodent liver. DHEA, the most abundant steroid in human, is described as a PPARalpha activator and also as a prohormone able to mediate induction of several genes. Here, we explored the in vitro and in vivo effects of DHEA on the expression of peroxisomal ABC transporters. We show that Abcd2 and Abcd3 but not Abcd4 are induced in primary culture of rat hepatocytes by DHEA-S. We also demonstrate that Abcd2 and Abcd3 but not Abcd4 are inducible by an 11-day treatment with DHEA in the liver of male rodents but not in brain, testes and adrenals. Finally and contrary to Abcd3, we show that the mechanism of induction of Abcd2 is independent of PPARalpha.


Subject(s)
ATP-Binding Cassette Transporters/genetics , Dehydroepiandrosterone/pharmacology , PPAR alpha/metabolism , Up-Regulation/drug effects , ATP Binding Cassette Transporter, Subfamily D , Acyl-CoA Oxidase/genetics , Adrenal Glands/drug effects , Adrenal Glands/metabolism , Androstenediol/pharmacology , Animals , Body Weight , Brain/drug effects , Brain/metabolism , Cells, Cultured , Female , Hepatocytes/drug effects , Hepatocytes/metabolism , Liver/cytology , Liver/drug effects , Liver/metabolism , Male , Membrane Proteins/genetics , Mice , Mice, Inbred C57BL , Organ Size , PPAR alpha/deficiency , PPAR alpha/genetics , Rats , Rats, Wistar , Sex Characteristics , Testis/drug effects , Testis/metabolism
12.
Eur J Biochem ; 268(12): 3490-500, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11422379

ABSTRACT

X-linked adrenoleukodystrophy (X-ALD) is a neurodegenerative disease due to a defect in the ABCD1 (ALD) gene. ABCD1, and the two close homologues ABCD2 (ALDR) and ABCD3 (PMP70), are genes encoding ATP-binding cassette half-transporters of the peroxisomal membrane. As overexpression of the ABCD2 or ABCD3 gene can reverse the biochemical phenotype of X-ALD (reduced beta-oxidation of very-long-chain fatty acids), pharmacological induction of these partially redundant genes may represent a therapeutic approach to X-ALD. We previously reported that the ABCD2 and ABCD3 genes could be strongly induced by fibrates, which are hypolipidaemic drugs and peroxisome-proliferators in rodents. We provide evidence that the induction is dependent on peroxisome proliferator-activated receptor (PPARalpha) as both genes were not induced in fenofibrate-treated PPARalpha -/- knock-out mice. To further characterize the PPARalpha pathway, we cloned and analysed the promoter of the ABCD2 gene, the closest homologue of the ABCD1 gene. The proximal region (2 kb) of the rat promoter displayed a high conservation with the human and mouse cognate sequences suggesting an important role of the region in regulation of the ABCD2 gene. Classically, fibrate-induction involves interaction of PPARalpha with a response element (PPRE) characterized by a direct repeat of the AGGTCA-like motif. Putative PPRE motifs of the rat ABCD2 promoter were studied in the isolated form or in their promoter context by gel-shift assay and transfection of COS-7 cells. We failed to characterize a functional PPRE, suggesting a different mechanism for the PPARalpha-dependent regulation of the ABCD2 gene.


Subject(s)
ATP-Binding Cassette Transporters/genetics , Adrenoleukodystrophy/genetics , Fenofibrate/pharmacology , Gene Expression Regulation/drug effects , Hypolipidemic Agents/pharmacology , Promoter Regions, Genetic , Receptors, Cytoplasmic and Nuclear/physiology , Transcription Factors/physiology , ATP Binding Cassette Transporter, Subfamily D , Animals , Base Sequence , DNA , Humans , Male , Mice , Mice, Knockout , Molecular Sequence Data , Rats , Rats, Wistar , Receptors, Cytoplasmic and Nuclear/genetics , Sequence Homology, Nucleic Acid , Transcription Factors/genetics , Transcription, Genetic
13.
Biochim Biophys Acta ; 1517(2): 257-69, 2001 Jan 26.
Article in English | MEDLINE | ID: mdl-11342107

ABSTRACT

X-linked adrenoleukodystrophy (X-ALD) is an inherited demyelinating disorder due to mutations in the ALD gene, which encodes a peroxisomal ABC half-transporter (ALDP). It has been suggested that ALDP assembles with ALDRP (adrenoleukodystrophy-related protein), a close homologous half-transporter, to form a functional heterodimer. For the first time full-length ALDRP cDNA (5.5 kb) was cloned, and 5' and 3' RACE analysis revealed that alternative usage of polyadenylation sites generates the two transcripts of 3.0 and 5.5 kb observed in the rat in Northern blot analysis. Southern blotting and chromosomal mapping demonstrated one ALDR locus in the rat genome. Characterisation of the 3' flanking region suggested that an ID sequence might be responsible for high expression of the 5.5 kb ALDRP transcript in rat brain. ALDR gene expression was found to be high in the liver of rats before weaning and very low in adult rats; the reverse developmental regulation was observed in the brain. Fenofibrate, which is a potent inducer of the ALDR gene in the liver of adult rats, could not induce the ALDR gene in suckling rats. The exact significance of this result with regard to development of an efficient pharmacological gene therapy for X-ALD is discussed.


Subject(s)
ATP-Binding Cassette Transporters , Adrenoleukodystrophy/genetics , Proteins/genetics , 3' Untranslated Regions/chemistry , 5' Untranslated Regions/chemistry , ATP Binding Cassette Transporter, Subfamily D , Amino Acid Sequence , Animals , Base Sequence , Brain/metabolism , Chromosome Mapping , Cloning, Molecular , DNA, Complementary/biosynthesis , DNA, Complementary/chemistry , Fenofibrate , Gene Expression Regulation, Developmental , Gene Library , Mice , Molecular Sequence Data , Protein Biosynthesis , Proteins/chemistry , Rats , Rats, Wistar
14.
Insect Mol Biol ; 8(3): 319-27, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10469249

ABSTRACT

Cotesia congregata polydnavirus (CcPDV) is essential for the successful parasitism of Manduca sexta larvae by the braconid wasp Cotesia congregata. In the absence of PDV, parasitoid eggs are encapsulated. Molecular analysis has demonstrated that polydnavirus sequences are integrated in the wasp chromosomes, and an ultrastructural analysis has shown that PDV replication occurs in the calyx region in the ovaries of the wasp. The bracovirus sequences appear to be excised from the wasp genome in the calyx cells where the virus replicates. Following excision of the virus sequences, the flanking sequences are rejoined. We analysed the production of two polydnavirus circles during wasp development and in different body parts of the adults of both sexes. Our study indicates that the excision of viral sequences is developmentally regulated, beginning in the pupal stage. In the adult wasp, excision occurs ubiquitously. However, regulation in the adult seems to occur only in diploid individuals, as no excision is detected in haploid males produced from virgin females.


Subject(s)
Polydnaviridae/genetics , Wasps/virology , Animals , Base Sequence , DNA Primers , DNA, Circular , DNA, Viral/isolation & purification , Female , Gene Expression Regulation, Developmental , Gene Expression Regulation, Viral , Male , Molecular Sequence Data , Ovary/virology , Polymerase Chain Reaction/methods , Wasps/growth & development
15.
Eur J Hum Genet ; 6(6): 638-41, 1998.
Article in English | MEDLINE | ID: mdl-9887385

ABSTRACT

ALDR is one of the four genes encoding an ATP Binding Cassette (ABC) hemi-transporter of the peroxisomal membrane so far identified in mammalian cells. The best known of these is X-ALD, whose dysfunction has been causally associated with X-linked adrenoleukodystrophy. ALDR and X-ALD protein product are closely related and we show here that this striking conservation is maintained at the genomic level. Although extending to a larger genomic region, the organisation of the mouse ALDR gene mirrors exactly that of X-ALD. This supports further the hypothesis that among the four known peroxisomal ABC hemi-transporters ALDRP is the most likely candidate as a modifier contributing to the phenotypic variability of X-linked adrenoleukodystrophy.


Subject(s)
ATP-Binding Cassette Transporters , Adrenoleukodystrophy/genetics , Exons , Proteins/genetics , ATP Binding Cassette Transporter, Subfamily D , Amino Acid Sequence , Animals , Base Sequence , DNA, Complementary , Mice , Molecular Sequence Data , Restriction Mapping , Sequence Homology, Amino Acid , X Chromosome
16.
J Gen Virol ; 78 ( Pt 12): 3125-34, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9400960

ABSTRACT

Cotesia congregata polydnavirus (CcPDV) is essential for successful parasitism of Manduca sexta larvae by the braconid wasp Cotesia congregata. To determine the molecular mechanisms for the vertical transmission of CcPDV in the wasps, we analysed the different forms of the virus sequences containing the gene encoding the early parasitism-specific protein 1 (EP1). By a detailed molecular analysis, we demonstrated that the EP1 sequences are present in wasp DNA in two forms: a circular form as seen in the virus particles and a form integrated into the wasp genome. Moreover, we showed that the integrated form of the EP1 sequences is able to excise in the ovary cells. A fragment corresponding to an EP1 'empty locus' (without the viral sequence) was PCR-amplified from ovarian DNA. Comparison of the sequences isolated from the EP1 circle, the integrated form and the empty locus revealed that the extremities of the EP1 genomic sequences constitute a direct repeat. Strikingly, these sequences contain a potential binding site for a recombinase of the Hin family located in close vicinity to the position where the DNA strand exchange occurs. Thus, the data bear upon the possibility that the bracovirus circles are excised via a mechanism related to the Hin mediated Conservative Specific-Specific Recombination (CSSR) of prokaryotes.


Subject(s)
DNA Nucleotidyltransferases/genetics , Genes, Viral , Glycoproteins , Insect Proteins/genetics , Integrases , Polydnaviridae/genetics , Wasps/genetics , Wasps/virology , Animals , Base Sequence , Binding Sites/genetics , Cloning, Molecular , DNA Nucleotidyltransferases/metabolism , Insect Proteins/metabolism , Molecular Sequence Data , Polydnaviridae/metabolism , Recombinases , Sequence Analysis , Wasps/parasitology
17.
Genomics ; 41(2): 275-8, 1997 Apr 15.
Article in English | MEDLINE | ID: mdl-9143506

ABSTRACT

We report here on the identification and genomic mapping of a novel member of the family of the ATP-binding cassette (ABC) transporters, ABC7, conserved in mouse and in humans. The ABC7 gene encodes a protein with the typical features of half-transporters, such as those involved in translocation of antigenic peptides or in peroxisomal disorders. ABC7 shows a ubiquitous expression pattern and maps to the X chromosome both in mouse and in humans. The high sequence similarity to those of two yeast half-transporters supports once again the extreme evolutionary conservation of this family of proteins.


Subject(s)
ATP-Binding Cassette Transporters/genetics , Conserved Sequence , X Chromosome , Amino Acid Sequence , Animals , Base Sequence , Chromosome Mapping , DNA, Complementary , Female , Humans , In Situ Hybridization , Mice , Molecular Sequence Data , Sequence Homology, Amino Acid
18.
Eur J Hum Genet ; 5(2): 99-101, 1997.
Article in English | MEDLINE | ID: mdl-9195160

ABSTRACT

We report here on the chromosomal mapping of the adrenoleukodystrophy-related (ALDR) gene on both the human and the mouse genomes. This gene encodes a peroxisomal ATP binding cassette transporter, closely related to the transporter identified as responsible for the adrenoleukodystrophy phenotype. ALDR maps on the syntenic region on murine and human autosomes. In addition, we could determine its position in relation to known microsatellite framework markers; this will allow to test its role in Zellweger syndrome and/ or related peroxisomal disorders.


Subject(s)
ATP-Binding Cassette Transporters , Adrenoleukodystrophy/genetics , Proteins/genetics , ATP Binding Cassette Transporter, Subfamily D , Animals , Chromosome Mapping , Chromosomes/genetics , Chromosomes, Human, Pair 12/genetics , Humans , In Situ Hybridization , Membrane Proteins/genetics , Mice , Peroxisomal Disorders/genetics , Zellweger Syndrome/genetics
19.
Mamm Genome ; 7(9): 673-6, 1996 Sep.
Article in English | MEDLINE | ID: mdl-8703120

ABSTRACT

Pigmentation of Drosophila eyes requires the concerted action of several genes, most of which have been cloned and characterized. Three of them, white, brown, and scarlet, have been directly implicated in the import of pigment precursors into the cells. These three genes encode similar proteins, belonging to the evolutionary conserved family of ATP Binding Cassette transporters. The identification of a novel mouse gene, ABC8, closely related to white is reported here, together with an analysis of its expression profile and its comparative mapping in mouse and human genome.


Subject(s)
ATP-Binding Cassette Transporters/genetics , Chromosome Mapping , Drosophila/genetics , Genes, Insect , Amino Acid Sequence , Animals , Base Sequence , Chromosomes, Human, Pair 21 , Cloning, Molecular , DNA Primers , Eye Color/genetics , Humans , Mice , Molecular Sequence Data , Polymerase Chain Reaction , Sequence Homology, Amino Acid
20.
Proc Natl Acad Sci U S A ; 93(3): 1265-9, 1996 Feb 06.
Article in English | MEDLINE | ID: mdl-8577752

ABSTRACT

Adrenoleukodystrophy (ALD), a severe demyelinating disease, is caused by mutations in a gene coding for a peroxisomal membrane protein (ALDP), which belongs to the superfamily of ATP binding cassette (ABC) transporters and has the structure of a half transporter. ALDP showed 38% sequence identity with another peroxisomal membrane protein, PMP70, up to now its closest homologue. We describe here the cloning and characterization of a mouse ALD-related gene (ALDR), which codes for a protein with 66% identity with ALDP and shares the same half transporter structure. The ALDR protein was overexpressed in COS cells and was found to be associated with the peroxisomes. The ALD and ALDR genes show overlapping but clearly distinct expression patterns in mouse and may thus play similar but nonequivalent roles. The ALDR gene, which appears highly conserved in man, is a candidate for being a modifier gene that could account for some of the extreme phenotypic variability of ALD. The ALDR gene is also a candidate for being implicated in one of the complementation groups of Zellweger syndrome, a genetically heterogeneous disorder of peroxisome biogenesis, rare cases of which were found to be associated with mutations in the PMP70 (PXMP1) gene.


Subject(s)
ATP-Binding Cassette Transporters/biosynthesis , ATP-Binding Cassette Transporters/genetics , Gene Expression , Membrane Proteins/biosynthesis , Membrane Proteins/genetics , Protein Biosynthesis , Proteins/genetics , ATP Binding Cassette Transporter, Subfamily D , ATP Binding Cassette Transporter, Subfamily D, Member 1 , ATP-Binding Cassette Transporters/chemistry , Adrenoleukodystrophy/genetics , Animals , Base Sequence , Cell Line , Chlorocebus aethiops , Cloning, Molecular , DNA Primers , DNA, Complementary , Exons , Genetic Complementation Test , Humans , Membrane Proteins/chemistry , Mice , Microbodies/metabolism , Molecular Sequence Data , Organ Specificity , Polymerase Chain Reaction , Proteins/chemistry , RNA, Messenger/biosynthesis , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Sequence Homology, Amino Acid , Transfection , Zellweger Syndrome/genetics
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