Amino acid repeats cause extraordinary coding sequence variation in the social amoeba Dictyostelium discoideum.

Protein sequences are normally the most conserved elements of genomes owing to purifying selection to maintain their functions. We document an extraordinary amount of within-species protein sequence variation in the model eukaryote Dictyostelium discoideum stemming from triplet DNA repeats coding for long strings of single amino acids. D. discoideum has a very large number of such strings, many of which are polyglutamine repeats, the same sequence that causes various human neurological disorders in humans, like Huntington's disease. We show here that D. discoideum coding repeat loci are highly variable among individuals, making D. discoideum a candidate for the most variable proteome. The coding repeat loci are not significantly less variable than similar non-coding triplet repeats. This pattern is consistent with these amino-acid repeats being largely non-functional sequences evolving primarily by mutation and drift.

Polistes dominulus (Hymenoptera, Vespidae) larvae show different cuticular patterns according to their sex: workers seem not use this chemical information.

During reproductive phase, larvae of male and female are intermingled in nest of social wasps. Workers care for and feed larvae that gives them an opportunity to bias investment with respect to sex, or even to kill some larvae, if they can distinguish between immature males and females. Cuticular hydrocarbon (CHC) mixtures are the most studied cues for species, nestmate, and caste recognition in social Hymenoptera. In this study, we investigate the paper wasp Polistes dominulus to see if male and female larvae show different patterns of CHCs and if workers are able to discriminate between male and female larvae on this basis. We performed gas chromatography-mass spectrometry analysis on cuticular extracts of larvae, and then we genotyped them to assign sex. We found sex-based variation in CHC-profiles sufficient for discrimination. However, our behavioral assays do not support the view that adults discriminate between male and female larvae within nests.

An unusually low microsatellite mutation rate in Dictyostelium discoideum, an organism with unusually abundant microsatellites.

The genome of the social amoeba Dictyostelium discoideum is known to have a very high density of microsatellite repeats, including thousands of triplet microsatellite repeats in coding regions that apparently code for long runs of single amino acids. We used a mutation accumulation study to see if unusually high microsatellite mutation rates contribute to this pattern. There was a modest bias toward mutations that increase repeat number, but because upward mutations were smaller than downward ones, this did not lead to a net average increase in size. Longer microsatellites had higher mutation rates than shorter ones, but did not show greater directional bias. The most striking finding is that the overall mutation rate is the lowest reported for microsatellites: approximately 1 x 10(-6) for 10 dinucleotide loci and 6 x 10(-6) for 52 trinucleotide loci (which were longer). High microsatellite mutation rates therefore do not explain the high incidence of microsatellites. The causal relation may in fact be reversed, with low mutation rates evolving to protect against deleterious fitness effects of mutation at the numerous microsatellites.