Organic compounds in fluid inclusions of Archean quartz-Analogues of prebiotic chemistry on early Earth.

The origin of life is still an unsolved mystery in science. Hypothetically, prebiotic chemistry and the formation of protocells may have evolved in the hydrothermal environment of tectonic fault zones in the upper continental crust, an environment where sensitive molecules are protected against degradation induced e.g. by UV radiation. The composition of fluid inclusions in minerals such as quartz crystals which have grown in this environment during the Archean period might provide important information about the first organic molecules formed by hydrothermal synthesis. Here we present evidence for organic compounds which were preserved in fluid inclusions of Archean quartz minerals from Western Australia. We found a variety of organic compounds such as alkanes, halocarbons, alcohols and aldehydes which unambiguously show that simple and even more complex prebiotic organic molecules have been formed by hydrothermal processes. Stable-isotope analysis confirms that the methane found in the inclusions has most likely been formed from abiotic sources by hydrothermal chemistry. Obviously, the liquid phase in the continental Archean crust provided an interesting choice of functional organic molecules. We conclude that organic substances such as these could have made an important contribution to prebiotic chemistry which might eventually have led to the formation of living cells.

Chloromethane release from carbonaceous meteorite affords new insight into Mars lander findings.

Controversy continues as to whether chloromethane (CH3Cl) detected during pyrolysis of Martian soils by the Viking and Curiosity Mars landers is indicative of organic matter indigenous to Mars. Here we demonstrate CH3Cl release (up to 8 µg/g) during low temperature (150-400°C) pyrolysis of the carbonaceous chondrite Murchison with chloride or perchlorate as chlorine source and confirm unequivocally by stable isotope analysis the extraterrestrial origin of the methyl group (δ(2)H +800 to +1100‰, δ(13)C -19.2 to +10‰,). In the terrestrial environment CH3Cl released during pyrolysis of organic matter derives from the methoxyl pool. The methoxyl pool in Murchison is consistent both in magnitude (0.044%) and isotope signature (δ(2)H +1054 ± 626‰, δ(13)C +43.2 ± 38.8‰,) with that of the CH3Cl released on pyrolysis. Thus CH3Cl emissions recorded by Mars lander experiments may be attributed to methoxyl groups in undegraded organic matter in meteoritic debris reaching the Martian surface being converted to CH3Cl with perchlorate or chloride in Martian soil. However we cannot discount emissions arising additionally from organic matter of indigenous origin. The stable isotope signatures of CH3Cl detected on Mars could potentially be utilized to determine its origin by distinguishing between terrestrial contamination, meteoritic infall and indigenous Martian sources.

Natural abiotic formation of oxalic acid in soils: results from aromatic model compounds and soil samples.

Oxalic acid is the smallest dicarboxylic acid and plays an important role in soil processes (e.g., mineral weathering and metal detoxification in plants). We have first proven its abiotic formation in soils and investigated natural abiotic degradation processes based on the oxidation of soil organic matter, enhanced by Fe(3+) and H(2)O(2) as hydroxyl radical suppliers. Experiments with the model compound catechol and further hydroxylated benzenes were performed to examine a common degradation pathway and to presume a general formation mechanism of oxalic acid. Two soil samples were tested for the release of oxalic acid and the potential effects of various soil parameters on oxalic acid formation. Additionally, the soil samples were treated with different soil sterilization methods to prove the oxalic acid formation under abiotic soil conditions. Different series of model experiments were conducted to determine a range of factors including Fe(3+), H(2)O(2), reaction time, pH, and chloride concentration on oxalic acid formation. Under certain conditions, catechol is degraded up to 65.6% to oxalic acid referring to carbon. In serial experiments with two soil samples, oxalic acid was produced, and the obtained results are suggestive of an abiotic degradation process. In conclusion, Fenton-like conditions with low Fe(3+) concentrations and an excess of H(2)O(2) as well as acidic conditions were required for an optimal oxalic acid formation. The presence of chloride reduced oxalic acid formation.

Natural abiotic formation of furans in soil.

Furan and its derivates are a potentially important, and little studied, class of volatile organic compounds of relevance to atmospheric chemistry. The emission of these reactive compounds has been attributed previously to biomass burning processes and biogenic sources. This paper investigates the natural abiotic formation of furans in soils, induced by the oxidation of organic matter by iron(III) and hydrogen peroxide. Several model compounds like catechol, substituted catechols, and phenols as well as different organic-rich soil samples were investigated for the release of furans. The measurements were performed with a purge and trap GC/MS system and the influence of hydrogen peroxide, reaction temperature, iron(III), pH, and reaction time on furan yield was determined. The optimal reaction turnover obtained with catechol was 2.33 microg of furan from 0.36 mg of carbon. Results presented in this paper show that a cleavage of catechol into a C2- and a C4-fragment occurs, in which the C4-fragment forms furan by integrating an oxygen atom stemming from H2O2. Furthermore, phenols could be transformed into catecholic structures under these Fenton-like conditions and also display the formation of furans. In conclusion, catalytic amounts of iron(III), the presence of hydrogen peroxide, and acidic conditions can be seen as the most important parameters required for an optimized furan formation.

Natural abiotic formation of trihalomethanes in soil: results from laboratory studies and field samples.

Trihalomethanes (THM), especially trichloromethane, play an important role in photochemical processes of the lower atmosphere, but the current knowledge of the known sources and sinks of trichloromethane is still incomplete. The trichloromethane flux through the environment is estimated at approximately 660 kt year(-1) and 90% of the emissions are of natural origin. Next to offshore seawater contributing approximately 360 kt year(-1) unknown soil processes are the most prominent source (approximately 220 kt year(-1)). This paper describes a new abiotic source of trichloromethane from the terrestrial environment induced by the oxidation of organic matter by iron(III) and hydrogen peroxide in the presence of chloride. Different organic-rich soils and a series of organic substances regarded as monomeric constituents of humus were investigated for their release of trichloromethene. The influence of iron(III), hydrogen peroxide, halide, and pH on its formation was assayed. The optimal reaction turn over for the representative compound catechol was 58.4 ng of CHCl3 from 1.8 mg of carbon applying chloride and 1.55 microg of CHBr3 from 1.8 mg of carbon applying bromide; resorcin and hydroquinone displayed similar numbers. Results presented in this paper pinpoint 1,2,4,5-tetrahydroxybenzene as playing a key role as intermediate in the formation pathway of the trihalomethanes. The highest THM yields were obtained when applying the oxidized form of 1,2,4,5-tetrahydroxybenzene as THM precursor. These findings are consistent with the well-known degradation pathway starting from resorcin-like dihydroxylated compounds proceeding via further hydroxylation and after halogenation finally ending up in trihalomethanes. In conclusion, Fenton-like reaction conditions (iron(III) and hydrogen peroxide), elevated halide content and an extended reaction time can be seen as the most important parameters required for an optimal THM formation.

Carbon suboxide, a highly reactive intermediate from the abiotic degradation of aromatic compounds in soil.

The formation of volatile compounds during abiotic degradation processes of aromatic compounds in soil has been the subject of many experimental studies but should be examined further. In this context, the present work investigates the natural formation of carbon suboxide using the model compounds catechol and 3,5-dichlorocatechol and also a soil sample from a peat bog. The measurements were performed with a purge and trap GC/ MS system following various optimization steps. Under certain conditions, we obtained 16.7 ng of carbon suboxide from a 250 mg soil sample. We also found that the formation of carbon suboxide requires a definite activation energy and that it is rather short-lived in the natural environment. A subsequent reaction to malonic acid is expected in the presence of water. It is shown that iron-(III), hydrogen peroxide, and chloride are prerequisites for its formation. Experimental parameters for the highest yield of carbon suboxide depend on the precise molecular structure of the model compound or on the individual soil sample, respectively. The presented results point to a new degradation process for aromatic compounds in soil.

Field study using two immunoassays for the determination of estradiol and ethinylestradiol in the aquatic environment.

The effluent of four sewage treatment plants (STP) and eight surface water samples from the river Rhine in Germany and two smaller rivers were monitored for the hormones estradiol (E2) and ethinylestradiol (EE2). The studied STPs are using different treatment processes. Two facilities include an activated sludge treatment, one is a constructed wetland, and one is just an aerated lagoon. For analysis of E2 and EE2 in the aquatic environment two immunoassays have been developed allowing a very cost-effective screening for both hormones in environmental samples. Detection limits could be established at 0.05 ng L(-1) for E2 and 0.01 ng L(-1) for EE2, taking a 50-fold enrichment into account. Median concentrations for E2 and EE2 in effluent samples were 12 and 1.8 ng L(-1), in surface water 4.0 and 0.7 ng L(-1), respectively. The highest estrogen concentrations were found in the effluent of the lagoon, equipped with very basic means of wastewater treatment.

Preservation of hypericin and related polycyclic quinone pigments in fossil crinoids.

The fringelite pigments, a group ofphenanthroperylene quinones discovered in purple coloured specimens of the Upper Jurassic crinoid Liliocrinus, demonstrate exceptional preservation of organic compounds in macrofossils. Here we report the finding of hypericin and related phenanthroperylene quinones in Liliocrinus munsterianus from the original 'Fringeli' locality and in the Middle Triassic crinoid Carnallicrinus carnalli. Our results show that fringelites in fact consist ofhypericin and closely related derivatives and that the stratigraphic range of phenanthroperylene quinones is much wider than previously known. The fossil occurrence of hypericin indicates a polyketide biosynthesis of hypericin-type pigments in Mesozoic crinoids analogous to similar polyketides, which occur in living crinoids. The common presence of a characteristic distribution pattern of the fossil pigments and related polycyclic aromatic hydrocarbons further suggests that this assemblage is the result of a stepwise degradation of hypericin via a general diagenetic pathway.

De novo formation of chloroethyne in soil.

To date, chloroethyne in the environment has been proposed to occur as a reactive intermediate during the reductive dechlorination of tri- and tetrachloroethene with zerovalent metals. Such artificial conditions might possibly be found at organohalide-contaminated sites that are surrounded by remediation barriers made of metallic iron. In this paper, it is shown that the highly reactive chloroethyne is also a product of natural processes in soil. Soil air samples from three differentterrestrial ecosystems of Northern Germany showed significant chloroethyne concentrations, besides other naturally produced monochlorinated compounds, such as chloromethane, chloroethane and chloroethene. Measured amounts range from 5 to 540 pg chloroethyne in air purged from 1 L of soil. A possible route of chloroethyne formation in soil is discussed, where chloroethyne is probably produced as a byproduct of the oxidative halogenation of aromatic compounds in soil. A series of laboratory studies, using the redox-sensitive catechol as a discrete organic model compound, showed the formation of chloroethyne when Fe3+ and hydrogen peroxide were added to the system. We therefore propose that the natural formation of chloroethyne in soil proceeds via oxidative cleavage of a quinonic system in the presence of the ubiquitous soil component chloride.

Screening of organic halogens and identification of chlorinated benzoic acids in carbonaceous meteorites.

The occurrence of halogenated organic compounds measured as a sum parameter and the evidence of chlorinated benzoic acids in four carbonaceous meteorites (Cold Bokkeveld, Murray, Murchison and Orgueil) from four independent fall events is reported. After AOX (Adsorbable organic halogen) and EOX (Extractable organic halogen) screening to quantify organically bound halogens, chlorinated organic compounds were analyzed by gas chromatography. AOX concentrations varying from 124 to 209 microg Cl/g d.w. were observed in carbonaceous meteorites. Ion chromatographic analysis of the distribution of organically bound halogens performed on the Cold Bokkeveld meteorite revealed that chlorinated and brominated organic compounds were extractable, up to 70%, whereas only trace amounts of organofluorines could be extracted. Chlorinated benzoic acids have been identified in carbonaceous meteorite extracts. Their presence and concentrations raise the question concerning the origin of halogenated, especially chlorinated, organic compounds in primitive planetary matter.

A novel enzyme-linked immunosorbent assay for ethynylestradiol using a long-chain biotinylated EE2 derivative.

Ethynylestradiol (EE2) is one of the most potent endocrine disrupting compounds capable to induce estrogenic effects even at trace level concentrations in the aquatic environment. Methods for detecting EE2 in such concentrations are generally based on GC or HPLC coupled to at least one mass spectrometer. Another approach are immunoassays and sensor systems but for most designs, derivatives of EE2 are required (e.g. for coupling to carrier proteins, enzyme or fluorescent labels, etc.). Here we present the straightforward synthesis and complete characterization of a new long-chain biotinylated EE2 derivative. The new EE2 derivative is used as tracer in a direct competitive enzyme-linked immunosorbent assay (ELISA) for the determination of EE2. With pure water, the limit of detection (LOD, signal-to-noise ratio, S/N = 3) and the test midpoint were found to be 14 and 136 ng l(-1), respectively. Cross reactivity (CR) was tested for 10 endogenous steroids and the BSA-conjugate used for immunization, as well as a synthetic precursor of the conjugate. Among the naturally occurring compounds, CR was determined to be maximum for metabolites of EE2 conjugated at ring-position 3 (17% and 37% for 3-glucuronide and 3-sulphate, respectively). Assay stability was tested against humic substances and organic solvents. Increasing amounts of organic solvents in the sample caused a clear decrease in sensitivity, presence of humic substances lead to an overestimation of EE2.

Formation of volatile iodinated alkanes in soil: results from laboratory studies.

Volatile iodinated organic compounds play an important role in the tropospheric photochemical system, but the current knowledge of the known sources and sinks of these alkyl iodides is still incomplete. This paper describes a new source of alkyl iodides from the pedosphere. Different organic-rich soils and humic acid were investigated for their release of volatile organoiodides. Six volatile organoiodides, iodomethane, iodoethane, 1-iodopropane, 2-iodopropane, 1-iodobutane and 2-iodobutane were identified and their release rates were determined. We assume an abiotic reaction mechanism induced by the oxidation of organic matter by iron(III). The influence of iron(III), iodide and pH on the formation of alkyl iodides was investigated. Additionally, different organic substances regarded as monomeric constituents of humus were examined for the production of alkyl iodides. Two possible reaction pathways for the chemical formation of alkyl iodides are discussed. As humic acids and iron(III) are widespread in the terrestrial environment, and the concentration of iodide in soil is strongly enriched (compared to seawater), this soil source of naturally occurring organoiodides is suggested to contribute significantly to the input of iodine into the troposphere.

Natural formation of vinyl chloride in the terrestrial environment.

Vinyl chloride is a highly reactive and toxic substance which is widely used in industry. It is the parent compound of poly(vinyl chloride) (PVC), one of the most important industrial polymers. Until now, it was thought that vinyl chloride found in the environment is exclusively man-made or results from the degradation of other anthropogenic substances, such as trichloroethylene and tetrachloroethylene. Here, we demonstrate that vinyl chloride also has natural sources. Soil air and ambient air from a rural area in Northern Germany were investigated for volatile chlorinated halocarbons. The concentrations of vinyl chloride in the soil air were significantly enhanced as compared to ambient air, indicating a natural formation of this compound in the soil. A series of laboratory experiments using different soils and model compounds was conducted, which clearly proved that vinyl chloride could be produced during soil processes. We propose that this highly reactive compound can be formed during the oxidative degradation of organic matter in soil, for example, in a reaction between humic substances, chloride ions and an oxidant (ferric ions or hydroxyl radicals). The redox-sensitive aromatic compounds in soil such as catechols and o-quinones can be degraded to CO2, accompanied by the release of vinyl chloride and other volatile chlorinated compounds. This process could have started in the Late Silurian to Early Devonian, 400 million years ago, when the first soils on earth evolved.