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1.
Protein Expr Purif ; 153: 1-6, 2019 01.
Article in English | MEDLINE | ID: mdl-30102973

ABSTRACT

The drug discovery process in the biopharmaceutical industry usually starts with the generation of plasmids coding for certain proteins. Due to advances in cloning techniques the generation of thousands of different plasmids is not a limiting factor anymore. The next step is the expression and evaluation of the proteins. In recent years significant progress has been made in the miniaturization of protein expression and purification. These processes have been adapted to robotic platforms and hundreds of proteins can be expressed and purified in parallel. As a consequence of miniaturization, the protein purification is restricted to a one-step process. In addition the amount of purified protein is usually in the µg-range. This might be suitable if a sensitive initial screening assay is available. However, when larger amounts of proteins are required robotic platforms are no longer appropriate. In addition, a one-step purification procedure is often not sufficient to obtain pure protein preparations. To address this topic we have used the NGC chromatography system for automated purification of up to five samples using a three-step purification procedure. The first chromatographic step is the capture step followed by a desalting step. The final purification was done using size exclusion chromatography. This set-up reduces the overall-time needed for protein production, needs minimal operator invention, is easy to handle and thus increases the throughput.


Subject(s)
Automation, Laboratory/methods , Chromatography, Liquid/methods , Immunoglobulin Fc Fragments/genetics , Plasmids/chemistry , Proteomics/instrumentation , Chromatography, Affinity/instrumentation , Chromatography, Affinity/methods , Chromatography, Gel/instrumentation , Chromatography, Gel/methods , Chromatography, Liquid/instrumentation , Cloning, Molecular , Gene Expression , HEK293 Cells , Humans , Immunoglobulin Fc Fragments/metabolism , Plasmids/metabolism , Proteomics/methods , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism
2.
J Cell Physiol ; 233(1): 699-711, 2018 Jan.
Article in English | MEDLINE | ID: mdl-28369921

ABSTRACT

Aim of this study was a genome-wide identification of mechano-regulated genes and candidate pathways in human chondrocytes subjected to a single anabolic loading episode and characterization of time evolution and re-inducibility of the response. Osteochondral constructs consisting of a chondrocyte-seeded collagen-scaffold connected to ß-tricalcium-phosphate were pre-cultured for 35 days and subjected to dynamic compression (25% strain, 1 Hz, 9 × 10 min over 3 hr) before microarray-profiling was performed. Proteoglycan synthesis was determined by 35 S-sulfate-incorporation over 24 hr. Cell viability and hardness of constructs were unaltered by dynamic compression while proteoglycan synthesis was significantly stimulated (1.45-fold, p = 0.016). Among 115 significantly regulated genes, 114 were up-regulated, 48 of them ≥ twofold. AP-1-relevant transcription factors FOSB and FOS strongly increased in line with elevated ERK1/2-phosphorylation and rising MAP3K4 expression. Expression of proteoglycan-synthesizing enzymes CHSY1 and GALNT4 was load-responsive as were factors associated with the MAPK-, TGF-ß-, calcium-, retinoic-acid-, Wnt-, and Notch-signaling pathway which were significantly upregulated SOX9, and BMP6 levels rose significantly also after multiple loading episodes at daily intervals even at the 14th cycle with no indication for desensitation. Canonical pSmad2/3 and pSmad1/5/9-signaling showed no consistent regulation. This study associates novel genes with mechanoregulation in chondrocytes, raising SOX9 protein levels with anabolic loading and suggests that more pathways than so far anticipated apparently work together in a complex network of stimulators and feedback-regulators. Upregulation of mechanosensitive indicators extending differentially into the resting time provides crucial knowledge to maximize cartilage matrix deposition for the generation of high-level cartilage replacement tissue.


Subject(s)
Chondrocytes/metabolism , Chondrogenesis/genetics , Mechanotransduction, Cellular , Bioreactors , Bone Morphogenetic Proteins/genetics , Bone Morphogenetic Proteins/metabolism , Calcium Signaling/genetics , Cell Culture Techniques/instrumentation , Cells, Cultured , Chondrocytes/pathology , Computational Biology , Databases, Genetic , Gene Expression Profiling/methods , Gene Expression Regulation , Gene Regulatory Networks , Humans , Mitogen-Activated Protein Kinases/genetics , Mitogen-Activated Protein Kinases/metabolism , Oligonucleotide Array Sequence Analysis , Protein Interaction Maps , Receptors, Notch/genetics , Receptors, Notch/metabolism , SOX9 Transcription Factor/genetics , SOX9 Transcription Factor/metabolism , Stress, Mechanical , Time Factors , Tissue Scaffolds , Transcriptome , Wnt Signaling Pathway/genetics
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