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1.
Autophagy ; : 1-23, 2023 Oct 16.
Article in English | MEDLINE | ID: mdl-37840274

ABSTRACT

Activated transmembrane receptors continue to signal following endocytosis and are only silenced upon ESCRT-mediated internalization of the receptors into intralumenal vesicles (ILVs) of the endosomes. Accordingly, endosomes with dysfunctional receptor internalization into ILVs can cause sustained receptor signaling which has been implicated in cancer progression. Here, we describe a surveillance mechanism that allows cells to detect and clear physically intact endosomes with aberrant receptor accumulation and elevated signaling. Proximity biotinylation and proteomics analyses of ESCRT-0 defective endosomes revealed a strong enrichment of the ubiquitin-binding macroautophagy/autophagy receptors SQSTM1 and NBR1, a phenotype that was confirmed in cell culture and fly tissue. Live cell microscopy demonstrated that loss of the ESCRT-0 subunit HGS/HRS or the ESCRT-I subunit VPS37 led to high levels of ubiquitinated and phosphorylated receptors on endosomes. This was accompanied by dynamic recruitment of NBR1 and SQSTM1 as well as proteins involved in autophagy initiation and autophagosome biogenesis. Light microscopy and electron tomography revealed that endosomes with intact limiting membrane, but aberrant receptor downregulation were engulfed by phagophores. Inhibition of autophagy caused increased intra- and intercellular signaling and directed cell migration. We conclude that dysfunctional endosomes are surveyed and cleared by an autophagic process, simaphagy, which serves as a failsafe mechanism in signal termination.Abbreviations: AKT: AKT serine/threonine kinase; APEX2: apurinic/apyrimidinic endodoexyribonuclease 2; ctrl: control; EEA1: early endosome antigen 1; EGF: epidermal growth factor; EGFR: epidermal growth factor receptor; ESCRT: endosomal sorting complex required for transport; GFP: green fluorescent protein; HGS/HRS: hepatocyte growth factor-regulated tyrosine kinase substrate; IF: immunofluorescence; ILV: intralumenal vesicle; KO: knockout; LIR: LC3-interacting region; LLOMe: L-leucyl-L-leucine methyl ester (hydrochloride); MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MAPK1/ERK2: mitogen-activated protein kinase 1; MAPK3/ERK1: mitogen-activated protein kinase 3; NBR1: NBR1 autophagy cargo receptor; PAG10: Protein A-conjugated 10-nm gold; RB1CC1/FIP200: RB1 inducible coiled-coil 1; siRNA: small interfering RNA; SQSTM1: sequestosome 1; TUB: Tubulin; UBA: ubiquitin-associated; ULK1: unc-51 like autophagy activating kinase 1; VCL: Vinculin; VPS37: VPS37 subunit of ESCRT-I; WB: western blot; WT: wild-type.

2.
Nat Commun ; 13(1): 6283, 2022 10 21.
Article in English | MEDLINE | ID: mdl-36270994

ABSTRACT

During autophagy, cytosolic cargo is sequestered into double-membrane vesicles called autophagosomes. The contributions of specific lipids, such as cholesterol, to the membranes that form the autophagosome, remain to be fully characterized. Here, we demonstrate that short term cholesterol depletion leads to a rapid induction of autophagy and a corresponding increase in autophagy initiation events. We further show that the ER-localized cholesterol transport protein GRAMD1C functions as a negative regulator of starvation-induced autophagy and that both its cholesterol transport VASt domain and membrane binding GRAM domain are required for GRAMD1C-mediated suppression of autophagy initiation. Similar to its yeast orthologue, GRAMD1C associates with mitochondria through its GRAM domain. Cells lacking GRAMD1C or its VASt domain show increased mitochondrial cholesterol levels and mitochondrial oxidative phosphorylation, suggesting that GRAMD1C may facilitate cholesterol transfer at ER-mitochondria contact sites. Finally, we demonstrate that expression of GRAMD family proteins is linked to clear cell renal carcinoma survival, highlighting the pathophysiological relevance of cholesterol transport proteins.


Subject(s)
Autophagy , Carrier Proteins , Carrier Proteins/metabolism , Mitochondria/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Cholesterol/metabolism , Energy Metabolism , Protein Transport
3.
Nat Commun ; 12(1): 6101, 2021 10 20.
Article in English | MEDLINE | ID: mdl-34671015

ABSTRACT

The mechanisms involved in programmed or damage-induced removal of mitochondria by mitophagy remains elusive. Here, we have screened for regulators of PRKN-independent mitophagy using an siRNA library targeting 197 proteins containing lipid interacting domains. We identify Cyclin G-associated kinase (GAK) and Protein Kinase C Delta (PRKCD) as regulators of PRKN-independent mitophagy, with both being dispensable for PRKN-dependent mitophagy and starvation-induced autophagy. We demonstrate that the kinase activity of both GAK and PRKCD are required for efficient mitophagy in vitro, that PRKCD is present on mitochondria, and that PRKCD facilitates recruitment of ULK1/ATG13 to early autophagic structures. Importantly, we demonstrate in vivo relevance for both kinases in the regulation of basal mitophagy. Knockdown of GAK homologue (gakh-1) in C. elegans or knockout of PRKCD homologues in zebrafish led to significant inhibition of basal mitophagy, highlighting the evolutionary relevance of these kinases in mitophagy regulation.


Subject(s)
Intracellular Signaling Peptides and Proteins/metabolism , Mitophagy , Protein Kinase C-delta/metabolism , Protein Serine-Threonine Kinases/metabolism , Animals , Autophagy , Autophagy-Related Protein-1 Homolog/metabolism , Autophagy-Related Proteins/metabolism , Caenorhabditis elegans , Cell Line, Tumor , Deferiprone/pharmacology , Fatty Acid-Binding Proteins/genetics , Fatty Acid-Binding Proteins/metabolism , Humans , Intracellular Signaling Peptides and Proteins/antagonists & inhibitors , Intracellular Signaling Peptides and Proteins/genetics , Lysosomes/metabolism , Mitochondria/metabolism , Mitophagy/drug effects , Protein Kinase C-delta/antagonists & inhibitors , Protein Kinase C-delta/genetics , Protein Serine-Threonine Kinases/antagonists & inhibitors , Protein Serine-Threonine Kinases/genetics , Zebrafish
4.
EMBO J ; 40(18): e107336, 2021 09 15.
Article in English | MEDLINE | ID: mdl-34309071

ABSTRACT

During tumor growth-when nutrient and anabolic demands are high-autophagy supports tumor metabolism and growth through lysosomal organelle turnover and nutrient recycling. Ras-driven tumors additionally invoke non-autonomous autophagy in the microenvironment to support tumor growth, in part through transfer of amino acids. Here we uncover a third critical role of autophagy in mediating systemic organ wasting and nutrient mobilization for tumor growth using a well-characterized malignant tumor model in Drosophila melanogaster. Micro-computed X-ray tomography and metabolic profiling reveal that RasV12 ; scrib-/- tumors grow 10-fold in volume, while systemic organ wasting unfolds with progressive muscle atrophy, loss of body mass, -motility, -feeding, and eventually death. Tissue wasting is found to be mediated by autophagy and results in host mobilization of amino acids and sugars into circulation. Natural abundance Carbon 13 tracing demonstrates that tumor biomass is increasingly derived from host tissues as a nutrient source as wasting progresses. We conclude that host autophagy mediates organ wasting and nutrient mobilization that is utilized for tumor growth.


Subject(s)
Autophagy , Energy Metabolism , Neoplasms/etiology , Neoplasms/metabolism , Nutrients/metabolism , Animals , Autophagy/genetics , Cachexia/diagnostic imaging , Cachexia/etiology , Cachexia/pathology , Disease Models, Animal , Disease Progression , Drosophila melanogaster , Humans , Muscle, Skeletal/metabolism , Muscle, Skeletal/physiology , Neoplasms/complications
5.
Autophagy ; 17(4): 1046-1048, 2021 04.
Article in English | MEDLINE | ID: mdl-33629888

ABSTRACT

Phase-separated droplets with liquid-like properties can be degraded by macroautophagy/autophagy, but the mechanism underlying this degradation is poorly understood. We have recently derived a physical model to investigate the interaction between autophagic membranes and such droplets, uncovering that intrinsic wetting interactions underlie droplet-membrane contacts. We found that the competition between droplet surface tension and the increasing tendency of growing membrane sheets to bend determines whether a droplet is completely engulfed or isolated in a piecemeal fashion, a process we term fluidophagy. Intriguingly, we found that another critical parameter of droplet-membrane interactions, the spontaneous curvature of the membrane, determines whether the droplet is degraded by autophagy or - counterintuitively - serves as a platform from which autophagic membranes expand into the cytosol. We also discovered that the interaction of membrane-associated LC3 with the LC3-interacting region (LIR) found in the autophagic cargo receptor protein SQSTM1/p62 and many other autophagy-related proteins influences the preferred bending directionality of forming autophagosomes in living cells. Our study provides a physical account of how droplet-membrane wetting underpins the structure and fate of forming autophagosomes.


Subject(s)
Autophagosomes , Autophagy , Cytosol , Macroautophagy , Microtubule-Associated Proteins
6.
Nature ; 591(7848): 142-146, 2021 03.
Article in English | MEDLINE | ID: mdl-33473217

ABSTRACT

Compartmentalization of cellular material in droplet-like structures is a hallmark of liquid-liquid phase separation1,2, but the mechanisms of droplet removal are poorly understood. Evidence suggests that droplets can be degraded by autophagy3,4, a highly conserved degradation system in which membrane sheets bend to isolate portions of the cytoplasm within double-membrane autophagosomes5-7. Here we examine how autophagosomes sequester droplets that contain the protein p62 (also known as SQSTM1) in living cells, and demonstrate that double-membrane, autophagosome-like vesicles form at the surface of protein-free droplets in vitro through partial wetting. A minimal physical model shows that droplet surface tension supports the formation of membrane sheets. The model also predicts that bending sheets either divide droplets for piecemeal sequestration or sequester entire droplets. We find that autophagosomal sequestration is robust to variations in the droplet-sheet adhesion strength. However, the two sides of partially wetted sheets are exposed to different environments, which can determine the bending direction of autophagosomal sheets. Our discovery of this interplay between the material properties of droplets and membrane sheets enables us to elucidate the mechanisms that underpin droplet autophagy, or 'fluidophagy'. Furthermore, we uncover a switching mechanism that allows droplets to act as liquid assembly platforms for cytosol-degrading autophagosomes8 or as specific autophagy substrates9-11. We propose that droplet-mediated autophagy represents a previously undescribed class of processes that are driven by elastocapillarity, highlighting the importance of wetting in cytosolic organization.


Subject(s)
Autophagosomes/metabolism , Autophagy , Cell Compartmentation , Cytosol/metabolism , Wettability , Adhesiveness , Autophagosomes/chemistry , Cell Line , Cytosol/chemistry , Humans , Intracellular Membranes/chemistry , Intracellular Membranes/metabolism , Sequestosome-1 Protein/metabolism , Surface Tension
7.
Proc Natl Acad Sci U S A ; 117(46): 28614-28624, 2020 11 17.
Article in English | MEDLINE | ID: mdl-33139578

ABSTRACT

As part of the lysosomal degradation pathway, the endosomal sorting complexes required for transport (ESCRT-0 to -III/VPS4) sequester receptors at the endosome and simultaneously deform the membrane to generate intraluminal vesicles (ILVs). Whereas ESCRT-III/VPS4 have an established function in ILV formation, the role of upstream ESCRTs (0 to II) in membrane shape remodeling is not understood. Combining experimental measurements and electron microscopy analysis of ESCRT-III-depleted cells with a mathematical model, we show that upstream ESCRT-induced alteration of the Gaussian bending rigidity and their crowding in concert with the transmembrane cargo on the membrane induce membrane deformation and facilitate ILV formation: Upstream ESCRT-driven budding does not require ATP consumption as only a small energy barrier needs to be overcome. Our model predicts that ESCRTs do not become part of the ILV, but localize with a high density at the membrane neck, where the steep decline in the Gaussian curvature likely triggers ESCRT-III/VPS4 assembly to enable neck constriction and scission.


Subject(s)
Endosomal Sorting Complexes Required for Transport/metabolism , Endosomes/metabolism , Intracellular Membranes/physiology , Models, Biological , Endosomes/ultrastructure , HeLa Cells , Humans
8.
EMBO J ; 39(24): e104948, 2020 12 15.
Article in English | MEDLINE | ID: mdl-33226137

ABSTRACT

Autophagosome formation requires multiple autophagy-related (ATG) factors. However, we find that a subset of autophagy substrates remains robustly targeted to the lysosome in the absence of several core ATGs, including the LC3 lipidation machinery. To address this unexpected result, we performed genome-wide CRISPR screens identifying genes required for NBR1 flux in ATG7KO cells. We find that ATG7-independent autophagy still requires canonical ATG factors including FIP200. However, in the absence of LC3 lipidation, additional factors are required including TAX1BP1 and TBK1. TAX1BP1's ability to cluster FIP200 around NBR1 cargo and induce local autophagosome formation enforces cargo specificity and replaces the requirement for lipidated LC3. In support of this model, we define a ubiquitin-independent mode of TAX1BP1 recruitment to NBR1 puncta, highlighting that TAX1BP1 recruitment and clustering, rather than ubiquitin binding per se, is critical for function. Collectively, our data provide a mechanistic basis for reports of selective autophagy in cells lacking the lipidation machinery, wherein receptor-mediated clustering of upstream autophagy factors drives continued autophagosome formation.


Subject(s)
Autophagy-Related Proteins/genetics , Autophagy-Related Proteins/metabolism , Autophagy/genetics , Autophagy/physiology , Microtubule-Associated Proteins/genetics , Microtubule-Associated Proteins/metabolism , Autophagosomes/metabolism , Autophagy-Related Protein 7/genetics , Autophagy-Related Protein 7/metabolism , Cell Death , Cluster Analysis , HEK293 Cells , Humans , Intracellular Signaling Peptides and Proteins/metabolism , K562 Cells , Lysosomes/metabolism , Neoplasm Proteins/metabolism , Protein Serine-Threonine Kinases/metabolism , Ubiquitin/metabolism
9.
Nat Cell Biol ; 22(7): 856-867, 2020 07.
Article in English | MEDLINE | ID: mdl-32601372

ABSTRACT

The ESCRT-III membrane fission machinery maintains the integrity of the nuclear envelope. Although primary nuclei resealing takes minutes, micronuclear envelope ruptures seem to be irreversible. Instead, micronuclear ruptures result in catastrophic membrane collapse and are associated with chromosome fragmentation and chromothripsis, complex chromosome rearrangements thought to be a major driving force in cancer development. Here we use a combination of live microscopy and electron tomography, as well as computer simulations, to uncover the mechanism underlying micronuclear collapse. We show that, due to their small size, micronuclei inherently lack the capacity of primary nuclei to restrict the accumulation of CHMP7-LEMD2, a compartmentalization sensor that detects loss of nuclear integrity. This causes unrestrained ESCRT-III accumulation, which drives extensive membrane deformation, DNA damage and chromosome fragmentation. Thus, the nuclear-integrity surveillance machinery is a double-edged sword, as its sensitivity ensures rapid repair at primary nuclei while causing unrestrained activity at ruptured micronuclei, with catastrophic consequences for genome stability.


Subject(s)
Cell Nucleus/pathology , Chromatin/metabolism , Chromosome Aberrations , DNA Damage , Endosomal Sorting Complexes Required for Transport/metabolism , Genomic Instability , Membrane Proteins/metabolism , Nuclear Proteins/metabolism , Cell Nucleus/genetics , Cell Nucleus/metabolism , Chromatin/genetics , Endosomal Sorting Complexes Required for Transport/genetics , HeLa Cells , Humans
10.
Nat Commun ; 11(1): 440, 2020 01 23.
Article in English | MEDLINE | ID: mdl-31974402

ABSTRACT

p62/SQSTM1 is an autophagy receptor and signaling adaptor with an N-terminal PB1 domain that forms the scaffold of phase-separated p62 bodies in the cell. The molecular determinants that govern PB1 domain filament formation in vitro remain to be determined and the role of p62 filaments inside the cell is currently unclear. We here determine four high-resolution cryo-EM structures of different human and Arabidopsis PB1 domain assemblies and observed a filamentous ultrastructure of p62/SQSTM1 bodies using correlative cellular EM. We show that oligomerization or polymerization, driven by a double arginine finger in the PB1 domain, is a general requirement for lysosomal targeting of p62. Furthermore, the filamentous assembly state of p62 is required for autophagosomal processing of the p62-specific cargo KEAP1. Our results show that using such mechanisms, p62 filaments can be critical for cargo uptake in autophagy and are an integral part of phase-separated p62 bodies.


Subject(s)
Arabidopsis Proteins/chemistry , Carrier Proteins/chemistry , Sequestosome-1 Protein/chemistry , Sequestosome-1 Protein/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Arginine/chemistry , Autophagy/physiology , Carrier Proteins/genetics , Carrier Proteins/metabolism , Cryoelectron Microscopy , Crystallography, X-Ray , HeLa Cells , Humans , Kelch-Like ECH-Associated Protein 1/genetics , Kelch-Like ECH-Associated Protein 1/metabolism , Lysosomes/metabolism , Polymerization , Protein Conformation , Protein Domains , Sequestosome-1 Protein/genetics
11.
PLoS Biol ; 17(4): e2007044, 2019 04.
Article in English | MEDLINE | ID: mdl-30933966

ABSTRACT

The power of forward genetics in yeast is the foundation on which the field of autophagy research firmly stands. Complementary work on autophagy in higher eukaryotes has revealed both the deep conservation of this process, as well as novel mechanisms by which autophagy is regulated in the context of development, immunity, and neuronal homeostasis. The recent emergence of new clustered regularly interspaced palindromic repeats/CRISPR-associated protein 9 (CRISPR/Cas9)-based technologies has begun facilitating efforts to define novel autophagy factors and pathways by forward genetic screening in mammalian cells. Here, we set out to develop an expanded toolkit of autophagy reporters amenable to CRISPR/Cas9 screening. Genome-wide screening of our reporters in mammalian cells recovered virtually all known autophagy-related (ATG) factors as well as previously uncharacterized factors, including vacuolar protein sorting 37 homolog A (VPS37A), transmembrane protein 251 (TMEM251), amyotrophic lateral sclerosis 2 (ALS2), and TMEM41B. To validate this data set, we used quantitative microscopy and biochemical analyses to show that 1 novel hit, TMEM41B, is required for phagophore maturation. TMEM41B is an integral endoplasmic reticulum (ER) membrane protein distantly related to the established autophagy factor vacuole membrane protein 1 (VMP1), and our data show that these two factors play related, albeit not fully overlapping, roles in autophagosome biogenesis. In sum, our work uncovers new ATG factors, reveals a malleable network of autophagy receptor genetic interactions, and provides a valuable resource (http://crispr.deniclab.com) for further mining of novel autophagy mechanisms.


Subject(s)
Autophagy/genetics , Autophagy/physiology , Membrane Proteins/genetics , CRISPR-Cas Systems , Endoplasmic Reticulum/metabolism , Humans , K562 Cells , Membrane Proteins/metabolism , Membrane Proteins/physiology , Protein Transport
12.
Lipids ; 53(7): 727-735, 2018 07.
Article in English | MEDLINE | ID: mdl-30252937

ABSTRACT

In this fish-feeding study, we tested similarity patterns between fatty acids (FA) in diets and common carp (Cyprinus carpio) of fish ponds used for semi-intensive aquaculture, containing naturally occurring pond zooplankton and different feeds (marine or terrestrial feeds) until carp reached market size. We evaluated if and how total lipid contents in dorsal fillets can reflect dietary FA compositions in farm-raised common carp and hypothesized that increasing total lipid contents in dorsal fillets significantly increase the similarity between dietary and dorsal fillets' FA compositions. Results of this study showed that carps had higher total lipids when supplied with marine feeds and dietary FA compositions were indeed more strongly reflected in fatty (i.e. high total lipid contents) than in leaner dorsal fillets (low total lipid contents). Increasing total lipid contents in dorsal fillets significantly increased the similarity between the dietary and dorsal fillets' FA compositions. In contrast, leaner dorsal fillets had FA patterns that were more distinct from dietary FA. Total lipid contents higher than ~60 mg/g dry weight in dorsal fillets had only limited effects on increasing the similarity between FA compositions of diets and dorsal fillets, and were independent of feed sources. It is thus suggested that higher total lipid contents in dorsal fillets can be used as a proxy to predict dietary FA profiles in common carps, or perhaps even in farm-raised fish in general.


Subject(s)
Carps , Dietary Fats/analysis , Fatty Acids/analysis , Seafood/analysis , Animals , Fisheries
13.
PLoS One ; 13(7): e0200464, 2018.
Article in English | MEDLINE | ID: mdl-30011305

ABSTRACT

The brown shrimp (Crangon crangon) fishery is of great socio-economic importance to coastal communities on the North Sea. The fishery is exploited by beam trawlers often using codends with very small mesh sizes, leading to concerns about catch rates of undersized shrimp. However, little information is available on codend size selection, making it difficult to provide scientifically based advice on alternative codend designs. Therefore, this study establishes a predictive framework for codend size selection of brown shrimp, based on a large selectivity dataset from 33 different codend designs tested during four experimental fishing cruises, during which more than 350,000 brown shrimp were length measured. Predictions by the framework confirm concerns about the exploitation pattern in the fishery, because the retention probability of undersized shrimp reaches 95% with the currently applied designs. The framework predictions allow the exploration of obtainable exploitation patterns depending on codend design. For example, increasing codend mesh size to 25-29 mm would reduce the retention rate of undersized shrimp to a maximum of 50%, depending on codend mesh type.


Subject(s)
Crangonidae/anatomy & histology , Fisheries , Models, Theoretical , Animals , Body Size , Equipment Design , North Sea , Seafood
14.
Nat Commun ; 9(1): 2932, 2018 07 26.
Article in English | MEDLINE | ID: mdl-30050131

ABSTRACT

The endosomal sorting complex required for transport (ESCRT) machinery mediates cargo sorting, membrane deformation and membrane scission on the surface of endosomes, generating intraluminal vesicles (ILVs) to degrade signaling receptors. By live-cell imaging of individual endosomes in human cells, we find that ESCRT proteins are recruited in a repetitive pattern: ESCRT-0 and -I show a gradual and linear recruitment and dissociation, whereas ESCRT-III and its regulatory ATPase VPS4 display fast and transient dynamics. Electron microscopy shows that ILVs are formed consecutively, starting immediately after endocytic uptake of cargo proteins and correlating with the repeated ESCRT recruitment waves, unraveling the timing of ILV formation. Clathrin, recruited by ESCRT-0, is required for timely ESCRT-0 dissociation, efficient ILV formation, correct ILV size and cargo degradation. Thus, cargo sorting and ILV formation occur by concerted, coordinated and repetitive recruitment waves of individual ESCRT subcomplexes and are controlled by clathrin.


Subject(s)
Clathrin/metabolism , Endosomal Sorting Complexes Required for Transport/metabolism , Biological Transport , HeLa Cells , Humans , Multivesicular Bodies , Protein Transport
15.
Nat Cell Biol ; 19(12): 1412-1423, 2017 Dec.
Article in English | MEDLINE | ID: mdl-29084199

ABSTRACT

The molecular mechanisms underlying the interdependence between intracellular trafficking and epithelial cell polarity are poorly understood. Here we show that inactivation of class III phosphatidylinositol-3-OH kinase (CIII-PI3K), which produces phosphatidylinositol-3-phosphate (PtdIns3P) on endosomes, disrupts epithelial organization. This is caused by dysregulation of endosomally localized Liver Kinase B1 (LKB1, also known as STK11), which shows delocalized and increased activity accompanied by dysplasia-like growth and invasive behaviour of cells provoked by JNK pathway activation. CIII-PI3K inactivation cooperates with RasV12 to promote tumour growth in vivo in an LKB1-dependent manner. Strikingly, co-depletion of LKB1 reverts these phenotypes and restores epithelial integrity. The endosomal, but not autophagic, function of CIII-PI3K controls polarity. We identify the CIII-PI3K effector, WD repeat and FYVE domain-containing 2 (WDFY2), as an LKB1 regulator in Drosophila tissues and human organoids. Thus, we define a CIII-PI3K-regulated endosomal signalling platform from which LKB1 directs epithelial polarity, the dysregulation of which endows LKB1 with tumour-promoting properties.


Subject(s)
Class III Phosphatidylinositol 3-Kinases/metabolism , Drosophila Proteins/metabolism , Endosomes/metabolism , Protein Kinases/metabolism , Protein Serine-Threonine Kinases/metabolism , AMP-Activated Protein Kinase Kinases , Animals , Animals, Genetically Modified , Caco-2 Cells , Cell Movement , Cell Polarity , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , Endocytosis , Epithelium/metabolism , Gene Knockdown Techniques , Genes, Insect , Humans , Intracellular Signaling Peptides and Proteins/metabolism , Organoids/metabolism , Signal Transduction
16.
Nature ; 541(7637): 417-420, 2017 01 19.
Article in English | MEDLINE | ID: mdl-28077876

ABSTRACT

As malignant tumours develop, they interact intimately with their microenvironment and can activate autophagy, a catabolic process which provides nutrients during starvation. How tumours regulate autophagy in vivo and whether autophagy affects tumour growth is controversial. Here we demonstrate, using a well characterized Drosophila melanogaster malignant tumour model, that non-cell-autonomous autophagy is induced both in the tumour microenvironment and systemically in distant tissues. Tumour growth can be pharmacologically restrained using autophagy inhibitors, and early-stage tumour growth and invasion are genetically dependent on autophagy within the local tumour microenvironment. Induction of autophagy is mediated by Drosophila tumour necrosis factor and interleukin-6-like signalling from metabolically stressed tumour cells, whereas tumour growth depends on active amino acid transport. We show that dormant growth-impaired tumours from autophagy-deficient animals reactivate tumorous growth when transplanted into autophagy-proficient hosts. We conclude that transformed cells engage surrounding normal cells as active and essential microenvironmental contributors to early tumour growth through nutrient-generating autophagy.


Subject(s)
Autophagy , Drosophila melanogaster/cytology , Models, Biological , Neoplasms/pathology , Tumor Microenvironment , Amino Acids/metabolism , Animals , Autophagy/drug effects , Autophagy/genetics , Biological Transport , Cell Proliferation , Disease Models, Animal , Drosophila Proteins/deficiency , Drosophila Proteins/genetics , Drosophila melanogaster/drug effects , Drosophila melanogaster/metabolism , Female , Interleukin-6/metabolism , Membrane Proteins , Neoplasm Invasiveness , Neoplasms/genetics , Neoplasms/metabolism , Reactive Oxygen Species/metabolism , Signal Transduction , Tumor Necrosis Factor-alpha/metabolism , Tumor Suppressor Proteins/deficiency , Tumor Suppressor Proteins/genetics
17.
Nat Commun ; 7: 13889, 2016 12 22.
Article in English | MEDLINE | ID: mdl-28004827

ABSTRACT

A fundamental question is how autophagosome formation is regulated. Here we show that the PX domain protein HS1BP3 is a negative regulator of autophagosome formation. HS1BP3 depletion increased the formation of LC3-positive autophagosomes and degradation of cargo both in human cell culture and in zebrafish. HS1BP3 is localized to ATG16L1- and ATG9-positive autophagosome precursors and we show that HS1BP3 binds phosphatidic acid (PA) through its PX domain. Furthermore, we find the total PA content of cells to be significantly upregulated in the absence of HS1BP3, as a result of increased activity of the PA-producing enzyme phospholipase D (PLD) and increased localization of PLD1 to ATG16L1-positive membranes. We propose that HS1BP3 regulates autophagy by modulating the PA content of the ATG16L1-positive autophagosome precursor membranes through PLD1 activity and localization. Our findings provide key insights into how autophagosome formation is regulated by a novel negative-feedback mechanism on membrane lipids.


Subject(s)
Autophagy/physiology , Nerve Tissue Proteins/metabolism , Phosphatidic Acids/metabolism , Animals , Animals, Genetically Modified , Autophagosomes/metabolism , Autophagy-Related Proteins/metabolism , Cell Line , Cortactin/metabolism , HEK293 Cells , HeLa Cells , Humans , Membrane Lipids/metabolism , Models, Biological , Nerve Tissue Proteins/chemistry , Phospholipase D/metabolism , Protein Domains , Zebrafish , Zebrafish Proteins/metabolism
18.
PLoS One ; 11(8): e0160507, 2016.
Article in English | MEDLINE | ID: mdl-27482906

ABSTRACT

In canonical Wnt signaling, the protein levels of the key signaling mediator ß-catenin are under tight regulation by the multimeric destruction complex that mediates proteasomal degradation of ß-catenin. In colorectal cancer, destruction complex activity is often compromised due to mutations in the multifunctional scaffolding protein Adenomatous Polyposis Coli (APC), leading to a stabilization of ß-catenin. Recently, tankyrase inhibitors (TNKSi), a novel class of small molecule inhibitors, were shown to re-establish a functional destruction complex in APC-mutant cancer cell lines by stabilizing AXIN1/2, whose protein levels are usually kept low via poly(ADP-ribosyl)ation by the tankyrase enzymes (TNKS1/2). Surprisingly, we found that for the formation of the morphological correlates of destruction complexes, called degradasomes, functional proteasomes are required. In addition we found that AXIN2 is strongly upregulated after 6 h of TNKS inhibition. The proteasome inhibitor MG132 counteracted TNKSi-induced degradasome formation and AXIN2 stabilization, and this was accompanied by reduced transcription of AXIN2. Mechanistically we could implicate the transcription factor FoxM1 in this process, which was recently shown to be a transcriptional activator of AXIN2. We observed a substantial reduction in TNKSi-induced stabilization of AXIN2 after siRNA-mediated depletion of FoxM1 and found that proteasome inhibition reduced the active (phosphorylated) fraction of FoxM1. This can explain the decreased protein levels of AXIN2 after MG132 treatment. Our findings have implications for the design of in vitro studies on the destruction complex and for clinical applications of TNKSi.


Subject(s)
Forkhead Box Protein M1/genetics , Gene Expression Regulation, Neoplastic , Proteasome Endopeptidase Complex/metabolism , Tankyrases/genetics , Adenomatous Polyposis Coli Protein/genetics , Adenomatous Polyposis Coli Protein/metabolism , Axin Protein/genetics , Axin Protein/metabolism , Caco-2 Cells , Cell Line, Tumor , Enzyme Inhibitors/pharmacology , Forkhead Box Protein M1/antagonists & inhibitors , Forkhead Box Protein M1/metabolism , Humans , Leupeptins/pharmacology , Phosphorylation/drug effects , Proteasome Endopeptidase Complex/drug effects , Protein Stability , Proteolysis/drug effects , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Tankyrases/antagonists & inhibitors , Tankyrases/metabolism , Wnt Signaling Pathway , beta Catenin/genetics , beta Catenin/metabolism
19.
Cell Rep ; 14(3): 464-470, 2016 Jan 26.
Article in English | MEDLINE | ID: mdl-26774485

ABSTRACT

Hedgehog (Hh) signaling is a key regulatory pathway during development and also has a functional role in mature neurons. Here, we show that Hh signaling regulates the odor response in adult Drosophila olfactory sensory neurons (OSNs). We demonstrate that this is achieved by regulating odorant receptor (OR) transport to and within the primary cilium in OSN neurons. Regulation relies on ciliary localization of the Hh signal transducer Smoothened (Smo). We further demonstrate that the Hh- and Smo-dependent regulation of the kinesin-like protein Cos2 acts in parallel to the intraflagellar transport system (IFT) to localize ORs within the cilium compartment. These findings expand our knowledge of Hh signaling to encompass chemosensory modulation and receptor trafficking.


Subject(s)
Cilia/metabolism , Drosophila Proteins/metabolism , Drosophila/metabolism , Receptors, Cell Surface/metabolism , Receptors, Odorant/metabolism , Animals , Behavior, Animal , Calcium/metabolism , Drosophila Proteins/antagonists & inhibitors , Drosophila Proteins/genetics , Kinesins/metabolism , Mutagenesis , Odorants , RNA Interference , RNA, Small Interfering/metabolism , Receptors, Cell Surface/antagonists & inhibitors , Receptors, Cell Surface/genetics , Receptors, G-Protein-Coupled/antagonists & inhibitors , Receptors, G-Protein-Coupled/genetics , Receptors, G-Protein-Coupled/metabolism , Receptors, Odorant/genetics , Signal Transduction , Smoothened Receptor
20.
Mol Cancer Res ; 13(11): 1487-501, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26124443

ABSTRACT

UNLABELLED: Tankyrase (TNKS) enzymes, due to their poly(ADP-ribose) polymerase activity, have emerged as potential targets in experimental cancer therapy. However, the functional consequences of TNKS inhibition remain incompletely resolved because of the binding promiscuity of TNKS. One of the hallmarks of small-molecule TNKS inhibitors (TNKSi) is the stabilization of AXIN, which plays a pivotal role in the WNT/ß-catenin signaling pathway. The present study focused on the known ability of TNKSi to induce cytoplasmic puncta (degradasomes) consisting of components of the signal-limiting WNT/ß-catenin destruction complex. Using the colorectal cancer cell line SW480 stably transfected with GFP-TNKS1, it was demonstrated that a TNKS-specific inhibitor (G007-LK) induces highly dynamic and mobile degradasomes that contain phosphorylated ß-catenin, ubiquitin, and ß-TrCP. Likewise, G007-LK was found to induce similar degradasomes in other colorectal cancer cell lines expressing wild-type or truncated versions of the degradasome component APC. Super-resolution and electron microscopy revealed that the induced degradasomes in SW480 cells are membrane-free structures that consist of a filamentous assembly of high electron densities and discrete subdomains of various destruction complex components. Fluorescence recovery after photobleaching experiments further demonstrated that ß-catenin-mCherry was rapidly turned over in the G007-LK-induced degradasomes, whereas GFP-TNKS1 remained stable. In conclusion, TNKS inhibition attenuates WNT/ß-catenin signaling by promoting dynamic assemblies of functional active destruction complexes into a TNKS-containing scaffold even in the presence of an APC truncation. IMPLICATIONS: This study demonstrates that ß-catenin is rapidly turned over in highly dynamic assemblies of WNT destruction complexes (degradasomes) upon tankyrase inhibition and provides a direct mechanistic link between degradasome formation and reduced WNT signaling in colorectal cancer cells.


Subject(s)
Axin Signaling Complex/metabolism , Sulfones/pharmacology , Tankyrases/antagonists & inhibitors , Tankyrases/metabolism , Triazoles/pharmacology , Wnt Signaling Pathway/drug effects , Cell Line, Tumor , Colonic Neoplasms/drug therapy , Colonic Neoplasms/metabolism , Humans
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