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1.
Phys Chem Chem Phys ; 18(30): 20091-6, 2016 Jul 27.
Article in English | MEDLINE | ID: mdl-27253677

ABSTRACT

The free nucleobases and mononucleotides of RNA do not form Watson-Crick base pairs in water, a fact that presents several challenges for the prebiotic synthesis of RNA. 2,6-Diaminopurine and adenosine-5'-monophosphate (AMP) are shown to form supramolecular assemblies with cyanuric acid in water. These assemblies and their propensity to form liquid crystals suggest a possible means by which non-covalent structures might have originally selected the shape of the Watson-Crick base pairs.

2.
Phys Chem Chem Phys ; 18(20): 13799-810, 2016 05 18.
Article in English | MEDLINE | ID: mdl-27142478

ABSTRACT

The interaction of hydrogen chloride (HCl) with ice surfaces at temperatures between 190 and 220 K was investigated using a coated-wall flow-tube connected to a chemical ionization mass spectrometer. Equilibrium surface coverages of HCl were determined at gas phase concentrations as low as 2 × 10(9) molecules cm(-3) (∼4 × 10(-8) Torr at 200 K) to derive Langmuir adsorption isotherms. The data are described by a temperature independent partition coefficient: KLang = (3.7 ± 0.2) × 10(-11) cm(3) molecule(-1) with a saturation surface coverage Nmax = (2.0 ± 0.2) × 10(14) molecules cm(-2). The lack of a systematic dependence of KLang on temperature contrasts the behaviour of numerous trace gases which adsorb onto ice via hydrogen bonding and is most likely related to the ionization of HCl at the surface. The results are compared to previous laboratory studies, and the equilibrium partitioning of HCl to ice surfaces under conditions relevant to the atmosphere is evaluated.

3.
J Phys Chem A ; 118(6): 974-85, 2014 Feb 13.
Article in English | MEDLINE | ID: mdl-24491030

ABSTRACT

The reaction between HO2 and CH3C(O)O2 has three exothermic product channels, forming OH (R3a), peracetic acid (R3b), and acetic acid plus O3 (R3c). The branching ratios of the OH- and ozone-forming reaction channels were determined using a combination of laser-induced fluorescence (LIF, for time-resolved OH concentration measurement) and transient absorption spectroscopy (TAS, for time-resolved O3 concentration measurement) following pulsed laser generation of HO2 and CH3C(O)O2 from suitable precursors. TAS was also used to determine the initial concentration of the reactant peroxy radicals. The data were evaluated by numerical simulation using kinetic models of the measured concentration profiles; a Monte Carlo approach was used to estimate the uncertainties of the rate constants (k3) and branching ratios (α) thus obtained. The reaction channel forming OH (R3a) was found to be the most important with α3a = 0.61 ± 0.09 and α3c = 0.16 ± 0.08. The overall rate coefficient of the title reaction was found to be k3 = (2.1 ± 0.4) × 10(-11) cm(3) molecule(-1) s(-1) for both HO2 and DO2. Use of DO2 resulted in an increase in α3a to 0.80 ± 0.14. Comparison with former studies shows that OH formation via (R3) has been underestimated significantly to date. Possible reasons for these discrepancies and atmospheric implications are discussed.

4.
Phys Chem Chem Phys ; 14(24): 8551-61, 2012 Jun 28.
Article in English | MEDLINE | ID: mdl-22614220

ABSTRACT

The heterogeneous interaction of N2O5 with Saharan dust particles was investigated using aerosol flow tubes with detection of N2O5 by cavity-ring-down spectroscopy. The uptake coefficient, γ, was determined to be 0.02 ± 0.01 on airborne Saharan dust particles, independent of relative humidity (RH, 0-67%) and initial N2O5 concentration (5 × 10(11)-3 × 10(13) molecule cm(-3)). Analysis of gas- and particulate phase products suggests that N2O5 undergoes heterogeneous hydrolysis forming particulate nitrate. The independence of γ on the initial N2O5 concentration indicates that, on the seconds time scale of these experiments, the heterogeneous reaction of N2O5 with dust particles is not restricted to the external particle surface but internal reactive sites are also available. The particles could be deactivated with respect to N2O5 uptake only when pre-treated with very high levels of HNO3.

5.
Phys Chem Chem Phys ; 12(47): 15544-50, 2010 Dec 21.
Article in English | MEDLINE | ID: mdl-20976362

ABSTRACT

The interaction of H(2)O(2) with ice surfaces at temperatures between 203 and 233 K was investigated using a low pressure, coated-wall flow tube equipped with a chemical ionisation/electron impact mass spectrometer. Equilibrium surface coverages of H(2)O(2) on ice were measured at various concentrations and temperatures to derive Langmuir-type adsorption isotherms. H(2)O(2) was found to be strongly partitioned to the ice surface at low temperatures, with a partition coefficient, K(linC), equal to 2.1 × 10(-5) exp(3800/T) cm. At 228 K, this expression results in values of K(linC) which are orders of magnitude larger than the single previous determination and suggests that H(2)O(2) may be significantly partitioned to the ice phase in cirrus clouds. The partition coefficient for H(2)O(2) was compared to several other trace gases which hydrogen-bond to ice surfaces and a good correlation with the free energy of condensation found. For this class of trace gas a simple parameterisation for calculating K(linC)(T) from thermodynamic properties was established.

6.
Plant Dis ; 94(4): 481, 2010 Apr.
Article in English | MEDLINE | ID: mdl-30754480

ABSTRACT

In August 2008, 30% of tomato (Solanum lycopersicum) plants in plots in Lubbock County, Texas showed yellowing, lateral stem dieback, upward leaf curling, enlargement of stems, adventitious roots, and swollen nodes. Yellowing in leaves was similar to that seen with zebra chip disease (ZC) of potato that was confirmed in a potato field 112 km away in July 2008 and was associated with a 'Candidatus Liberibacter' species (1), similar to findings earlier in 2008 in New Zealand and California (2,3). Tissue from four symptomatic plants of cv. Spitfire and two of cv. Celebrity were collected and DNA was extracted from midribs and petioles with a FastDNA Spin Kit (Qbiogene, Inc., Carlsbad, CA,). PCR amplification was done with 16S rRNA gene primers OA2 and OI2c, which are specific for "Ca. Liberibacter solanacearum" from potato and tomato and amplify a 1.1-kb fragment of the 16S rRNA gene of this new species (1,3). Amplicons of 1.1 kb were obtained from all samples and these were sequenced in both orientations (McLab, San Francisco, CA). Sequences of the 16S rRNA gene were identical for both Spitfire and Celebrity and were submitted to the NCBI as GenBank Accession Nos. FJ939136 and FJ939137, respectively. On the basis of a BLAST search, sequence alignments revealed 99.9% identity with a new species of 'Ca. Liberibacter' from potato (EU884128 and EU884129) in Texas (1); 99.7% identity with the new species "Ca. Liberibacter solanacearum" described from potato and tomato (3) in New Zealand (EU849020 and EU834130, respectively) and from the potato psyllid Bactericera cockerelli in California (2) (EU812559, EU812556); 97% identity with 'Ca L. asiaticus' from citrus in Malaysia (EU224393) and 94% identity with both 'Ca. L. africanus' and 'Ca. L. americanus' from citrus (EU921620 and AY742824, respectively). A neighbor-joining cladogram constructed using the 16S rRNA gene fragments delineated four clusters corresponding to each species, and these sequences clustered with "Ca. L. solanacearum". A second PCR analysis was conducted with the CL514F/CL514R primer pair, which amplifies a sequence from the rplJ and rplL ribosomal protein genes of "Ca. L. solanacearum". The resulting 669-bp products were 100% identical to a sequence reported from tomato in Mexico (FJ498807). This sequence was submitted to NCBI (GU169328). ZC, a disease causing losses to the potato industry, is associated with a 'Candidatus Liberibacter' species (1-3) and was reported in Central America and Mexico in the 1990s, in Texas in 2000, and more recently in other states in the United States (4). In 2008, a "Ca. Liberibacter solanacearum" was detected on Capsicum annuum, S. betaceum, and Physalis peruviana in New Zealand (3). Several studies have shown that the potato psyllid, B. cockerelli, is a potential vector for this pathogen (2,4). To our knowledge, this is the first report of "Ca. Liberibacter solanacearum" in field tomatoes showing ZC-like foliar disease symptoms in the United States. References: (1). J. A. Abad et al. Plant Dis. 93:108, 2009 (2) A. K. Hansen et al. Appl. Environ. Microbiol. 74:5862, 2008. (3) L. W. Liefting et al. Plant Dis. 93:208, 2009. (4) G. A. Secor et al. Plant Dis. 93:574, 2009.

7.
Phys Chem Chem Phys ; 10(17): 2345-55, 2008 May 07.
Article in English | MEDLINE | ID: mdl-18414726

ABSTRACT

The physical adsorption of formic (HC(O)OH) and acetic (CH(3)C(O)OH) acid on ice was measured as a function of concentration and temperature. At low concentrations, the gas-ice interaction could be analysed by applying Langmuir adsorption isotherms to determine temperature dependent partition constants, K(Lang). Using temperature independent saturation coverages (N(max)) of (2.2 +/- 0.5) x 10(14) molecule cm(-2) and (2.4 +/- 0.6) x 10(14) molecule cm(-2) for HC(O)OH and CH(3)C(O)OH, respectively, we derive K(Lang)(HC(O)OH) = 1.54 x 10(-24) exp (6150/T) and K(Lang)(CH(3)C(O)OH) = 6.55 x 10(-25) exp (6610/T) cm(3) molecule(-1). Via a van't Hoff analysis, adsorption enthalpies were obtained for HC(O)OH and CH(3)C(O)OH. Experiments in which both acids or HC(O)OH and methanol interacted with the ice surface simultaneously were adequately described by competitive adsorption kinetics. The results are compared to previous measurements and used to calculate the equilibrium partitioning of these trace gases to ice surfaces under conditions relevant to the atmosphere.


Subject(s)
Acetic Acid/chemistry , Formates/chemistry , Ice , Temperature , Adsorption , Binding, Competitive , Surface Properties , Time Factors
8.
Phys Chem Chem Phys ; 9(24): 3136-48, 2007 Jun 28.
Article in English | MEDLINE | ID: mdl-17612737

ABSTRACT

The heterogeneous chemistry of HOI, ICl and IBr on sea salt and sea salt proxies has been studied at 274 K using two experimental approaches: a wetted wall flow tube coupled to an electron impact mass spectrometer (WWFT-MS) and an aerosol flow tube (AFT) coupled to a differential mobility analyser (DMA) and a chemical ionisation mass spectrometer (CIMS). Uptake of all three title molecules into bulk aqueous halide salt films was rapid and controlled by gas phase diffusion. Uptake of HOI gave rise to gas-phase ICl and IBr, with the latter being the predominant product whenever Br(-) was present. Only partial release of IBr was observed due to high solubility of dihalogens in the film. ICl uptake gave the same yield of IBr as HOI uptake. Uptake of ICl on NaBr aerosol was accommodation limited with alpha = 0.018 +/- 0.004 and gas phase IBr product has a yield of 0.6 +/- 0.3. The results show that HOI can act as a catalyst for activation of bromine from sea-salt aerosols in the marine boundary layer, via the reactions: HOI(aq) + Cl + H--> ICl(aq) + H(2)O(l) and ICl(aq) + Br--> IBr(aq) + Cl.


Subject(s)
Iodine Compounds/chemistry , Models, Chemical , Models, Molecular , Salts/chemistry , Seawater/chemistry , Aerosols/chemistry , Computer Simulation , Molecular Conformation , Solutions
9.
Int Endod J ; 40(5): 374-85, 2007 May.
Article in English | MEDLINE | ID: mdl-17326785

ABSTRACT

AIM: To compare the sealing of root canals filled with two single-cone obturation systems and a warm vertical compaction technique. METHODOLOGY: Forty-two single-rooted teeth were decoronated to obtain 17-mm-long root segments. The root canals were cleaned and shaped to size 40, 0.06 taper and filled with: (i) warm vertical compaction with AH Plus (control); (ii) ActiV GP and (iii) GuttaFlow with single master cones. Leakage was evaluated by fluid filtration at 10 psi before root resection, and after 3, 6, 9 and 12 mm apical resections. Repeated measures anovas on ranks and Dunn's multiple comparison tests were performed to examine differences in fluid flow rates amongst different resection lengths for each filling technique. The surface and interior aspects of glass-ionomer filler-coated ActiV GP gutta-percha cones was evaluated with SEM. RESULTS: No statistical difference amongst the filling techniques was seen at 0 and 3 mm root resections. ActiV GP and GuttaFlow exhibited more leakage than AH Plus at 6, 9 and 12 mm resections. AH Plus recorded the best overall results. A nonhomogeneous coating of glass-ionomer fillers on the surface of ActiV GP cones was detected. CONCLUSIONS: The two single-cone techniques examined are as effective in sealing the apex as AH Plus when the latter was used with warm vertical compaction. It is further hypothesized that the inferior coronal seal of these single-cone techniques may be improved with the placement of accessory cones to reduce sealer thickness or an immediate coronal adhesive restoration.


Subject(s)
Dental Leakage/prevention & control , Root Canal Obturation/methods , Analysis of Variance , Gutta-Percha/therapeutic use , Humans , Root Canal Filling Materials/therapeutic use , Statistics, Nonparametric
10.
Neurology ; 67(4): 607-13, 2006 Aug 22.
Article in English | MEDLINE | ID: mdl-16924013

ABSTRACT

BACKGROUND: Spinocerebellar ataxia type 10 (SCA10) is an autosomal dominant disorder characterized by cerebellar ataxia and seizures. SCA10 is caused by an expansion of an ATTCT pentanucleotide repeat in intron 9 of the ataxin 10 (ATXN10) gene encoding an approximately 55-kd protein of unknown function. However, how this mutation leads to SCA10 is unknown. METHODS: In an effort to understand the pathogenic mechanism of SCA10, the authors conducted a series of experiments to address the effect of repeat expansion on the transcription and RNA processing of the ATXN10 gene. In addition, we generated Sca10 (mouse ataxin 10 homolog)-null mice and addressed the role of Sca10 gene dosage on the cerebellum. RESULTS: Mutant ATXN10 allele is transcribed at the normal level, and the pre-mRNA containing an expanded repeat is processed normally in patient-derived cells. Sca10-null mice exhibited embryonic lethality. Heterozygous mutants were overtly normal and did not develop SCA10 phenotype CONCLUSION: A simple gain of function or loss of function of ATXN10 is unlikely to be the major pathogenic mechanism contributing to the spinocerebellar ataxia type 10 phenotype.


Subject(s)
Fibroblasts/metabolism , Lymphocytes/metabolism , Nerve Tissue Proteins/chemistry , Nerve Tissue Proteins/metabolism , Spinocerebellar Ataxias/metabolism , Amino Acid Sequence , Animals , Ataxin-10 , Biomarkers/metabolism , Cells, Cultured , Humans , Mice , Molecular Sequence Data , Tissue Distribution
11.
J Biomed Mater Res A ; 71(4): 685-92, 2004 Dec 15.
Article in English | MEDLINE | ID: mdl-15514964

ABSTRACT

Benzoyl peroxide (BP), a tumor promoter, has been shown to cause free-radical-induced lipid peroxidation and membrane damage at toxic concentrations. However, its effects on lipid metabolism at concentrations that were not overtly toxic have not been investigated. The purpose of the current study was to examine the effects of BP and its final degradation product, benzoic acid (BA), on lipid metabolism. Two cell lines, hamster cheek pouch (HCP) and human monocytes (THP-1), were used to determine the effects of BP, BA, and BP combined with FeCl2 on cell lipid metabolism. Cells were exposed to BP and 14C acetate for 24 h, or cells with prelabeled lipids were harvested, and the lipids were extracted and separated with the use of thin-layer chromatography. Lipid metabolism of some neutral lipids such as triglycerides was altered for both cell types in response to BP. Also, cholesterol content was reduced in THP-1 cells and a phospholipid, phosphatidylethanolamine (PE), was reduced in HCP cells. The final degradation product of BP, BA, failed to elicit any response in lipid metabolism. Subtoxic concentrations of BP induced changes in neutral lipids such as triglycerides and cholesterol. The metabolism of major phospholipids except PE remained unchanged. The effects were related to BP and its degradation and varied with the cell type.


Subject(s)
Benzoyl Peroxide/pharmacology , Keratolytic Agents/pharmacology , Lipid Metabolism , Animals , Benzoic Acid/pharmacology , Cell Count , Cell Line , Cell Membrane Permeability/drug effects , Cell Proliferation/drug effects , Cricetinae , Epithelial Cells/drug effects , Epithelial Cells/metabolism , Humans , Monocytes/drug effects , Monocytes/metabolism
12.
Biochem Soc Trans ; 32(Pt 4): 571-4, 2004 Aug.
Article in English | MEDLINE | ID: mdl-15270678

ABSTRACT

Chloroplast gene expression is mainly regulated at the post-transcriptional level by numerous nuclear-encoded RNA-binding protein factors. In the present study, we focus on two RNA-binding proteins: cpRNP (chloroplast ribonucleoprotein) and PPR (pentatricopeptide repeat) protein. These are suggested to be major contributors to chloroplast RNA metabolism. Tobacco cpRNPs are composed of five different proteins containing two RNA-recognition motifs and an acidic N-terminal domain. The cpRNPs are abundant proteins and form heterogeneous complexes with most ribosome-free mRNAs and the precursors of tRNAs in the stroma. The complexes could function as platforms for various RNA-processing events in chloroplasts. It has been demonstrated that cpRNPs contribute to RNA stabilization, 3'-end formation and editing. The PPR proteins occur as a superfamily only in the higher plant species. They are predicted to be involved in RNA/DNA metabolism in chloroplasts or mitochondria. Nuclear-encoded HCF152 is a chloroplast-localized protein that usually has 12 PPR motifs. The null mutant of Arabidopsis, hcf152, is impaired in the 5'-end processing and splicing of petB transcripts. HCF152 binds the petB exon-intron junctions with high affinity. The number of PPR motifs controls its affinity and specificity for RNA. It has been suggested that each of the highly variable PPR proteins is a gene-specific regulator of plant organellar RNA metabolism.


Subject(s)
Arabidopsis Proteins/metabolism , Chloroplasts/metabolism , RNA-Binding Proteins/metabolism , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/physiology , Gene Expression/physiology , RNA-Binding Proteins/chemistry , RNA-Binding Proteins/physiology , Repetitive Sequences, Amino Acid
13.
Biomed Tech (Berl) ; 48(9): 226-9, 2003 Sep.
Article in German | MEDLINE | ID: mdl-14526449

ABSTRACT

The development of the upper jaw during growth is influenced by the function and position of the tongue and perioral soft tissues, and the pressures exerted by them. Accurate determination of the forces exerted by the tongue would provide relevant information about this influence. To date, our ability to obtain continuous recordings of the tongue pressure during certain functions is limited. In this paper, an easy-to-employ and accurate telemetric system for such functional measurements is presented. The system, consisting of four piezoresistive pressure sensors, a microcontroller, a telemetric module and batteries, is integrated within a removable orthodontic plate and transmits the measured data out of the oral cavity to a receiver.


Subject(s)
Equipment Failure Analysis , Orthodontic Appliances, Removable , Palate/physiology , Physical Examination/instrumentation , Telemetry/instrumentation , Tongue/physiology , Transducers , Adult , Electronics , Equipment Design , Humans , Male , Miniaturization , Pressure , Reproducibility of Results , Sensitivity and Specificity
14.
Cell Prolif ; 35(3): 183-92, 2002 Jun.
Article in English | MEDLINE | ID: mdl-12027954

ABSTRACT

A human oral tumour progression model was established that consists of normal epithelial cells and three cell lines representing stages from dysplastic to metastatic cells. To investigate the impact of exogenous transforming growth factor-beta 1 on this model system, we analysed the responsiveness of those cells to transforming growth factor-beta 1 and explored the potential mechanism underlying the transforming growth factor-beta 1 activity. We found that the growth of all cell types, regardless of their stage of tumour progression, is inhibited by transforming growth factor-beta 1, although to different degrees. Transforming growth factor-beta 1 induced the expression of cyclin-dependent kinase inhibitors p15(INK4B), p21WAF1/(CIP1) and p27(KIP1). In contrast, transforming growth factor-beta 1 was found to stimulate the invasive potential of one cell type that represents the most advanced stage of tumour phenotype, suggesting that the impact of transforming growth factor-beta 1 on functional features of tumour cells other than cellular proliferation may play a significant role in the process of oral tumour progression.


Subject(s)
Carcinoma/metabolism , Mouth Neoplasms/metabolism , Transforming Growth Factor beta/pharmacology , Active Transport, Cell Nucleus , Carcinoma/pathology , Cell Cycle Proteins/metabolism , Cell Division/drug effects , Cell Line , Cell Movement/drug effects , Cell Nucleus/metabolism , Cells, Cultured , DNA-Binding Proteins/metabolism , Disease Progression , Humans , Keratinocytes/drug effects , Keratinocytes/physiology , Kinetics , Male , Middle Aged , Mouth Neoplasms/pathology , Smad3 Protein , Trans-Activators/metabolism , Transforming Growth Factor beta1 , Tumor Cells, Cultured
15.
RNA ; 7(10): 1464-75, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11680851

ABSTRACT

In Escherichia coli, the exoribonuclease polynucleotide phosphorylase (PNPase), the endoribonuclease RNase E, a DEAD-RNA helicase and the glycolytic enzyme enolase are associated with a high molecular weight complex, the degradosome. This complex has an important role in processing and degradation of RNA. Chloroplasts contain an exoribonuclease homologous to E. coli PNPase. Size exclusion chromatography revealed that chloroplast PNPase elutes as a 580-600 kDa complex, suggesting that it can form an enzyme complex similar to the E. coli degradosome. Biochemical and mass-spectrometric analysis showed, however, that PNPase is the only protein associated with the 580-600 kDa complex. Similarly, a purified recombinant chloroplast PNPase also eluted as a 580-600 kDa complex after gel filtration chromatography. These results suggest that chloroplast PNPase exists as a homo-multimer complex. No other chloroplast proteins were found to associate with chloroplast PNPase during affinity chromatography. Database analysis of proteins homologous to E. coli RNase E revealed that chloroplast and cyanobacterial proteins lack the C-terminal domain of the E. coli protein that is involved in assembly of the degradosome. Together, our results suggest that PNPase does not form a degradosome-like complex in the chloroplast. Thus, RNA processing and degradation in this organelle differ in several respects from those in E. coli.


Subject(s)
Chloroplasts/enzymology , Endoribonucleases/metabolism , Escherichia coli/enzymology , Multienzyme Complexes/metabolism , Polyribonucleotide Nucleotidyltransferase/metabolism , RNA Helicases/metabolism , Chaperonin 60/chemistry , Chromatography, Affinity , Electrophoresis, Polyacrylamide Gel , Endoribonucleases/chemistry , Multienzyme Complexes/chemistry , Photosynthesis , Polyribonucleotide Nucleotidyltransferase/chemistry , RNA Helicases/chemistry , Spinacia oleracea
16.
Science ; 294(5542): 567-71, 2001 Oct 19.
Article in English | MEDLINE | ID: mdl-11641491

ABSTRACT

Electron hole (radical cation) migration in DNA, where the quantum transport of an injected charge is gated in a correlated manner by the thermal motions of the hydrated counterions, is described here. Classical molecular dynamics simulations in conjunction with large-scale first-principles electronic structure calculations reveal that different counterion configurations lead to formation of states characterized by varying spatial distributions and degrees of charge localization. Stochastic dynamic fluctuations between such ionic configurations can induce correlated changes in the spatial distribution of the hole, with concomitant transport along the DNA double helix. Comparative ultraviolet light-induced cleavage experiments on native B DNA oligomers and on ones modified to contain counterion (Na(+))-starved bridges between damage-susceptible hole-trapping sites called GG steps show in the latter a reduction in damage at the distal step. This reduction indicates a reduced mobility of the hole across the modified bridge as predicted theoretically.


Subject(s)
Cations , DNA/chemistry , Chemical Phenomena , Chemistry, Physical , Computer Simulation , DNA/metabolism , Electrochemistry , Electron Transport , Electrons , Models, Molecular , Nucleic Acid Conformation , Organophosphorus Compounds , Oxidation-Reduction , Quantum Theory , Sodium/chemistry , Temperature , Thermodynamics , Ultraviolet Rays , Water
17.
J Orofac Orthop ; 62(4): 255-63, 2001 Jul.
Article in English, German | MEDLINE | ID: mdl-11508102

ABSTRACT

BACKGROUND: Infants and toddlers with Down's syndrome are treated at the Department of Orthodontics, University of Frankfurt/Main only when the tongue protrudes over the lower lip, hindering mouth closure. No plate therapy is applied in patients with less tongue protrusion. This study aimed to assess objectively the treatment effects of stimulation plate therapy after Castillo-Morales at this early stage of development. PATIENTS AND METHOD: The follow-up covered 33 children, 20 of whom showed no mouth closure with the tongue resting protrusively on the lower lip at first examination at the age of 8 months. These 20 children received orthodontic treatment based on a stimulation plate. The parents were advised to insert the plate four times a day for about half an hour respectively. The overall treatment time was ca. 2 years. The second group (13 children) received no early treatment, as the functional parameters were only slightly altered at the age of 7 months. At follow-up, the children of the treatment group were between 8.8 +/- 2.3, and those of the control group 8.9 +/- 3.0 years old. The children underwent clinical examination; the parents answered a questionnaire. Additionally, study casts and intraoral photographs were taken along with frontal and profile photographs. The factors assessed were various functions, dentition, facial development, and subjective rating of the parents. RESULTS: In contrast to the initial findings, no difference between the two groups was found at follow-up. CONCLUSION: Early treatment using a stimulation plate thus appears to mitigate or even normalize the initially more severe dysfunctions recorded in the study group as compared to the controls.


Subject(s)
Down Syndrome/therapy , Orthodontic Appliances, Removable , Age Factors , Follow-Up Studies , Humans , Infant , Retrospective Studies , Surveys and Questionnaires , Time Factors , Tongue
18.
J Orofac Orthop ; 62(4): 305-19, 2001 Jul.
Article in English, German | MEDLINE | ID: mdl-11508107

ABSTRACT

Orthodontic treatment is described in a case requiring an early treatment start due to disturbed eruption in the upper front, with displacement of an upper central incisor, tongue dysfunction and Class III tendency. The further course revealed additional problems which had been unforeseeable at treatment onset: ankylosis of the lower left first molar and dehiscences in the lower front. Treatment duration was very long due to treatment measures overlapping. The interdisciplinary treatment measures are outlined and the difficulties posed by contractual guidelines are pointed out.


Subject(s)
Gingival Diseases , Incisor , Molar , Orthodontics, Corrective , Tooth Ankylosis , Tooth Avulsion , Adolescent , Adult , Age Factors , Child , Dentition, Mixed , Female , Gingival Diseases/etiology , Gingival Diseases/therapy , Humans , Malocclusion/therapy , Models, Dental , Orthodontic Wires , Radiography, Panoramic , Time Factors , Tooth Ankylosis/therapy , Tooth Eruption , Tooth Movement Techniques
19.
Biochemistry ; 40(33): 9770-9, 2001 Aug 21.
Article in English | MEDLINE | ID: mdl-11502170

ABSTRACT

Furamidine and related diamidines represent a promising series of drugs active against widespread parasites, in particular the Pneumocystic carinii pathogen. In this series, the phenylfuranbenzimidazole diamidine derivative DB293 was recently identified as the first unfused aromatic dication capable of forming stacked dimers in the DNA minor groove of GC-containing sequences. Here we present a detailed biochemical and biophysical characterization of the DNA sequence recognition properties of DB293. Three complementary footprinting techniques using DNase I, Fe(II)-EDTA, and an anthraquinone photonuclease were employed to locate binding sites for DB293 in different DNA restriction fragments. Two categories of sites were identified by DNase I footprinting: (i) 4/5 bp sequences containing contiguous A.T pairs, such as 5'-AAAA and 5'-ATTA; and (ii) sequences including the motif 5'-ATGA.5'-TCAT. In particular, a 13-bp sequence including two contiguous ATGA motifs provided a highly preferential recognition site for DB293. Quantitative footprinting analysis revealed better occupancy of the 5'-ATGA site compared to the AT-rich sites. Preferential binding of DB293 to ATGA sites was also observed with other DNA fragments and was confirmed independently by means of hydroxyl radical footprinting generated by the Fe(II)-EDTA system, as well as by a photofootprinting approach using the probe anthraquinone-2-sulfonate (AQS). In addition, this photosensitive reagent revealed the presence of sites of enhanced cutting specific to DB293. This molecule, but not other minor groove binders such as netropsin, induces specific local structural changes in DNA near certain binding sites, as independently shown by DNase I and the AQS probe. Recognition of the ATGA sequence by DB293 was investigated further using melting temperature experiments and surface plasmon resonance (SPR). The use of different hairpin oligonucleotides showed that DB293 can interact with AT sites via the formation of 1:1 drug-DNA complexes but binds much more strongly, and cooperatively, to ATGA-containing sequences to form 2:1 drug-DNA complexes. DB293 binds strongly to ATGA sequences with no significant context dependence but is highly sensitive to the orientation of the target sequence. The formation of 2:1 DB293/DNA complexes is abolished by reversing the sequence 5'-ATGA-->3'-ATGA, indicating that directionality plays an important role in the drug-DNA recognition process. Similarly, a single mutation in the A[T-->G]GA sequence is very detrimental to the dimer interactions of DB293. From the complementary footprinting and SPR data, the 5'-ATGA sequence is identified as being a highly favored dimer binding site for DB293. The data provide clues for delineating a recognition code for diamidine-type minor groove binding agents, and ultimately to guide the rational design of gene regulatory molecules targeted to specific sites of the genetic material.


Subject(s)
Cations/chemistry , DNA/chemistry , Dimerization , Antifungal Agents/chemistry , Antifungal Agents/pharmacology , Base Sequence , Benzamidines/chemistry , Benzamidines/pharmacology , Binding Sites , DNA/metabolism , Deoxyribonuclease I/metabolism , Dose-Response Relationship, Drug , Drug Design , Kinetics , Molecular Sequence Data , Pneumocystis/chemistry , Protein Binding , Surface Plasmon Resonance , Temperature
20.
Mol Cell Biol ; 21(16): 5408-16, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11463823

ABSTRACT

The molecular mechanism of mRNA degradation in the chloroplast consists of sequential events including endonucleolytic cleavage, the addition of poly(A)-rich sequences to the endonucleolytic cleavage products, and exonucleolytic degradation by polynucleotide phosphorylase (PNPase). In Escherichia coli, polyadenylation is performed mainly by poly(A)-polymerase (PAP) I or by PNPase in its absence. While trying to purify the chloroplast PAP by following in vitro polyadenylation activity, it was found to copurify with PNPase and indeed could not be separated from it. Purified PNPase was able to polyadenylate RNA molecules with an activity similar to that of lysed chloroplasts. Both activities use ADP much more effectively than ATP and are inhibited by stem-loop structures. The activity of PNPase was directed to RNA degradation or polymerization by manipulating physiologically relevant concentrations of P(i) and ADP. As expected of a phosphorylase, P(i) enhanced degradation, whereas ADP inhibited degradation and enhanced polymerization. In addition, searching the complete Arabidopsis genome revealed several putative PAPs, none of which were preceded by a typical chloroplast transit peptide. These results suggest that there is no enzyme similar to E. coli PAP I in spinach chloroplasts and that polyadenylation and exonucleolytic degradation of RNA in spinach chloroplasts are performed by one enzyme, PNPase.


Subject(s)
Polyribonucleotide Nucleotidyltransferase/metabolism , Spinacia oleracea/enzymology , Chloroplasts/enzymology , Enzyme Activation , Exonucleases/metabolism , Plant Proteins/metabolism , Polynucleotide Adenylyltransferase/metabolism , Substrate Specificity
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