Flanged males have higher reproductive success in a completely wild orangutan population.

Male orangutans (Pongo spp.) exhibit bimaturism, an alternative reproductive tactic, with flanged and unflanged males displaying two distinct morphological and behavioral phenotypes. Flanged males are larger than unflanged males and display secondary sexual characteristics which unflanged males lack. The evolutionary explanation for alternative reproductive tactics in orangutans remains unclear because orangutan paternity studies to date have been from sites with ex-captive orangutans, provisioning via feeding stations and veterinary care, or that lack data on the identity of mothers. Here we demonstrate, using the first long-term paternity data from a site free of these limitations, that alternative reproductive tactics in orangutans are condition-dependent, not frequency-dependent. We found higher reproductive success by flanged males than by unflanged males, a pattern consistent with other Bornean orangutan (Pongo pygmaeus) paternity studies. Previous paternity studies disagree on the degree of male reproductive skew, but we found low reproductive skew among flanged males. We compare our findings and previous paternity studies from both Bornean and Sumatran orangutans (Pongo abelii) to understand why these differences exist, examining the possible roles of species differences, ecology, and human intervention. Additionally, we use long-term behavioral data to demonstrate that while flanged males can displace unflanged males in association with females, flanged males are unable to keep other males from associating with a female, and thus they are unable to completely mate guard females. Our results demonstrate that alternative reproductive tactics in Bornean orangutans are condition-dependent, supporting the understanding that the flanged male morph is indicative of good condition. Despite intense male-male competition and direct sexual coercion by males, female mate choice is effective in determining reproductive outcomes in this population of wild orangutans.

Mother-offspring proximity maintenance as an infanticide avoidance strategy in bornean orangutans (Pongo pygmaeus wurmbii).

Sexually-selected infanticide by males is widespread across primates. Maternal protection is one of many infanticide avoidance strategies employed by female primates. Bornean orangutan (Pongo pygmaeus wurmbii) mothers with younger offspring are less social with males than mothers with older offspring. Additionally, the distance between a mother and offspring decreases in the presence of male conspecifics, but not female conspecifics. We hypothesized that mothers are responsible for the change in mother-offspring proximity when males are present. Using a year of behavioral data from orangutans in Gunung Palung National Park, we tested whether the Hinde Index, a ratio of the number of approaches and leaves between two individuals, was indicative of mother or offspring proximity maintenance across different social groupings. The semi-solitary social organization of orangutans allows us to observe different social groupings. We found that the mother-offspring Hinde Index was typically indicative of offspring maintenance of proximity. However, the presence of male conspecifics was associated with an increase in the Hinde Index which indicates that mothers are responsible for the decrease in mother-offspring distance when males are present. The decrease in mother-offspring distances and increase in Hinde Index when males are present indicates that mothers react to the presence of males in a protective manner. We suggest this may be an infanticide avoidance behavior by mother orangutans.

Possible Male Infanticide in Wild Orangutans and a Re-evaluation of Infanticide Risk.

Infanticide as a male reproductive tactic is widespread across mammals, and is particularly prevalent in catarrhine primates. While it has never been observed in wild orangutans, infanticide by non-sire males has been predicted to occur due to their extremely long inter-birth intervals, semi-solitary social structure, and the presence of female counter-tactics to infanticide. Here, we report on the disappearance of a healthy four-month-old infant, along with a serious foot injury suffered by the primiparous mother. No other cases of infant mortality have been observed at this site in 30 years of study. Using photographic measurements of the injury, and information on the behavior and bite size of potential predators, we evaluate the possible causes of this injury. The context, including the behavior of the female and the presence of a new male at the time of the injury, lead us to conclude that the most likely cause of the infant loss and maternal injury was male infanticide. We suggest that in orangutans, and other species where nulliparous females are not preferred mates, these females may be less successful at using paternity confusion as an infanticide avoidance tactic, thus increasing the likelihood of infanticide of their first-born infants.

Aggregate-Induced Self-Assembly and Ultrafast Dynamics of Light-Harvesting D-A-A Polymorphs.

Organic dipolar molecules are an emerging class of light harvesters useful in electronic applications and have captured new urgency with the design and synthesis of new molecular structures for device testing. However, research has not evolved beyond the cyclical thin film preparation-device testing-chemical structural modification approach. Without an understanding of polymorphism, molecular photophysics at the interface or metastable morphologies that regulate charge carrier dynamics, it is not obvious a priori if a new molecular structure will produce a suitable thin film morphology for superior device performance without developing structure-function relationships that consider morphology and photophysics. Dipolar, light harvesting molecules are synthesized with a covalent, para-functionalized triphenylamine donor (D) and acceptor (A) in π-conjugated structures, D-A1 and D-A1 -A2 , that have previously achieved 9.6% power conversion efficiency in thermally evaporated organic solar cell devices with C70 . Solution processing and morphological manipulation are hypothesized to reduce ultrafast radiative charge recombination, unique to dipolar structures, that prevents full charge separation to the fullerene. The photophysics of the D-A interface using femtosecond transient absorption spectroscopy is explained, and microscopy data reveal a newly discovered, supramolecular amorphous polymer metastable state presented as a transient absorption assisted strategy for photofunctional polymorph design.

Ultrafast Spectroscopic Dynamics of Quinacrine-Riboflavin Binding Protein Interactions.

Redox active cofactors play a dynamic role inside protein binding active sites because the amino acids responsible for binding participate in electron transfer (ET) reactions. Here, we use femtosecond transient absorption (FsTA) spectroscopy to examine the ultrafast ET between quinacrine (Qc), an antimalarial drug with potential anticancer activity, and riboflavin binding protein (RfBP) with a known Kd = 264 nM. Steady-state absorption reveals a ∼ 10 nm red-shift in the ground state when QcH32+ is titrated with RfBP, and a Stern-Volmer analysis shows ∼84% quenching and a blue-shift of the QcH32+ photoluminescence to form a 1:1 binding ratio of the QcH32+-RfBP complex. Upon selective photoexcitation of QcH32+ in the QcH32+-RfBP complex, we observe charge separation in 7 ps to form 1[QcH3_red•+-RfBP•+], which persists for 138 ps. The FsTA spectra show the spectroscopic identification of QcH3_red•+, determined from spectroelectrochemical measurements in DMSO. We correlate our results to literature and report lifetimes that are 10-20× slower than the natural riboflavin, Rf-RfBP, complex and are oxygen independent. Driving force (ΔG) calculations, corrected for estimated dielectric constants for protein hydrophobic pockets, and Marcus theory depict a favorable one-electron ET process between QcH32+ and nearby redox active tyrosine (Tyr) or tryptophan (Trp) residues.

Photoinduced charge recombination in dipolar D-A-A photonic liquid crystal polymorphs.

A hexylalkoxy dipolar D-A-A molecule [7-(4-N,N-(bis(4-hexyloxyphenyl)amino)phenyl)-2,1,3-(benzothia-diazol-4-yl)methylene]propane-dinitrile, (C6-TPA-BT-CN) has been synthesized and the photophysics studied via femtosecond transient absorption spectroscopy (FsTA) in toluene and in amorphous and liquid crystalline spherulite thin films. Two spherulite macromolecular crystalline phases (banded, and non-banded) were observed through concentration dependent, solution processing techniques and are birefringent with a negative sign of elongation. A dramatic change in the electronic absorption from blue in amorphous films to green in spherulites was observed, and the molecular orientation was determined through the combined analysis of polarized light microscopy, X-ray diffraction, and scanning electron microscopy. FsTA was performed on amorphous films and show complex charge recombination dynamics, and a Stark effect, characterized from the combined TPA+˙ and [BT-CN]-˙ spectroscopic signatures at 450 nm and 510 nm and identified through spectroelectrochemistry. Radical cation dynamics of TPA+˙ was observed selectively at 750 nm with >503.3 ps (18%) recombination kinetics resulting in a rather significant yield of free charge carriers in amorphous films and consistent with previous reports on energetically disordered blend films. However, photoexcitation on large, non-banded spherulites areas (>250 µm) reveal average monoexponential charge recombination lifetimes of 169.2 ps from delocalized states similar to those observed in amorphous films and are 5× longer-lived than previous reports [Chang et al., J. Am. Chem. Soc., 2013, 135, 8790] of a related methyl-DPAT-BT-CN whose amorphous thin films were prepared through vapor deposition. Thus, the correlation between the microstructure of the blend film and the photoinduced radical pair dynamics described here is critical for developing a fundamental understanding of how dipolar states contribute to the charge carrier yield in a disordered energy system.

Cooperatively assembling donor-acceptor superstructures direct energy into an emergent charge separated state.

A novel supramolecular system composed of diketopyrrolopyrrole electron donors and perylene derived bisimide (PDI) electron acceptors forms superstructures that undergo fast photoinduced charge separation following assembly. This bioinspired route toward functional hierarchical structures, whereby assembly and electronic properties are closely coupled, could lead to new materials for artificial photosynthesis and organic electronics.

Probing the Quenching of Quantum Dot Photoluminescence by Peptide-Labeled Ruthenium(II) Complexes.

Charge transfer processes with semiconductor quantum dots (QDs) have generated much interest for potential utility in energy conversion. Such configurations are generally nonbiological; however, recent studies have shown that a redox-active ruthenium(II)-phenanthroline complex (Ru2+-phen) is particularly efficient at quenching the photoluminescence (PL) of QDs, and this mechanism demonstrates good potential for application as a generalized biosensing detection modality since it is aqueous compatible. Multiple possibilities for charge transfer and/or energy transfer mechanisms exist within this type of assembly, and there is currently a limited understanding of the underlying photophysical processes in such biocomposite systems where nanomaterials are directly interfaced with biomolecules such as proteins. Here, we utilize redox reactions, steady-state absorption, PL spectroscopy, time-resolved PL spectroscopy, and femtosecond transient absorption spectroscopy (FSTA) to investigate PL quenching in biological assemblies of CdSe/ZnS QDs formed with peptide-linked Ru2+-phen. The results reveal that QD quenching requires the Ru2+ oxidation state and is not consistent with Förster resonance energy transfer, strongly supporting a charge transfer mechanism. Further, two colors of CdSe/ZnS core/shell QDs with similar macroscopic optical properties were found to have very different rates of charge transfer quenching, by Ru2+-phen with the key difference between them appearing to be the thickness of their ZnS outer shell. The effect of shell thickness was found to be larger than the effect of increasing distance between the QD and Ru2+-phen when using peptides of increasing persistence length. FSTA and time-resolved upconversion PL results further show that exciton quenching is a rather slow process consistent with other QD conjugate materials that undergo hole transfer. An improved understanding of the QD-Ru2+-phen system can allow for the design of more sophisticated charge-transfer-based biosensors using QD platforms.

Quantum dots as platforms for charge transfer-based biosensing: challenges and opportunities.

Semiconductor quantum dots (QDs) have received significant attention as unique photoluminescent materials for biological imaging and sensing. Charge transfer (CT) modulation of QD emission has recently emerged as a promising detection modality in these applications; however, much still remains unknown about the mechanism through which an electron or hole transfers from a QD exciton to a redox active moiety in a bioconjugate construct. Here, we highlight the utility and challenges of CT for QD-based biosensing, particularly in comparison to Förster resonance energy transfer (FRET), and summarize the current understanding of this process, which is situated at the intersection between biological and photovoltaic research with QDs.

Competition between Förster resonance energy transfer and electron transfer in stoichiometrically assembled semiconductor quantum dot-fullerene conjugates.

Understanding how semiconductor quantum dots (QDs) engage in photoinduced energy transfer with carbon allotropes is necessary for enhanced performance in solar cells and other optoelectronic devices along with the potential to create new types of (bio)sensors. Here, we systematically investigate energy transfer interactions between C60 fullerenes and four different QDs, composed of CdSe/ZnS (type I) and CdSe/CdS/ZnS (quasi type II), with emission maxima ranging from 530 to 630 nm. C60-pyrrolidine tris-acid was first coupled to the N-terminus of a hexahistidine-terminated peptide via carbodiimide chemistry to yield a C60-labeled peptide (pepC60). This peptide provided the critical means to achieve ratiometric self-assembly of the QD-(pepC60) nanoheterostructures by exploiting metal affinity coordination to the QD surface. Controlled QD-(pepC60)N bioconjugates were prepared by discretely increasing the ratio (N) of pepC60 assembled per QD in mixtures of dimethyl sulfoxide and buffer; this mixed organic/aqueous approach helped alleviate issues of C60 solubility. An extensive set of control experiments were initially performed to verify the specific and ratiometric nature of QD-(pepC60)N assembly. Photoinitiated energy transfer in these hybrid organic-inorganic systems was then interrogated using steady-state and time-resolved fluorescence along with ultrafast transient absorption spectroscopy. Coordination of pepC60 to the QD results in QD PL quenching that directly tracks with the number of peptides displayed around the QD. A detailed photophysical analysis suggests a competition between electron transfer and Förster resonance energy transfer from the QD to the C60 that is dependent upon a complex interplay of pepC60 ratio per QD, the presence of underlying spectral overlap, and contributions from QD size. These results highlight several important factors that must be considered when designing QD-donor/C60-acceptor systems for potential optoelectronic and biosensing applications.

Covalently patterned graphene surfaces by a force-accelerated Diels-Alder reaction.

Cyclopentadienes (CPs) with Raman and electrochemically active tags were patterned covalently onto graphene surfaces using force-accelerated Diels-Alder (DA) reactions that were induced by an array of elastomeric tips mounted onto the piezoelectric actuators of an atomic force microscope. These force-accelerated cycloadditions are a feasible route to locally alter the chemical composition of graphene defects and edge sites under ambient atmosphere and temperature over large areas (∼1 cm(2)).

Controlled doping in thin-film transistors of large contorted aromatic compounds.

Bigger and better: The new thin-film organic material octabenzcircumbiphenyl (OBCB; see scheme) forms an active layer in a field effect transistor, which can be switched simultaneously with two different inputs, that is, electrical bias and protonation.

Spanning four mechanistic regions of intramolecular proton-coupled electron transfer in a Ru(bpy)3(2+)-tyrosine complex.

Proton-coupled electron transfer (PCET) from tyrosine (TyrOH) to a covalently linked [Ru(bpy)(3)](2+) photosensitizer in aqueous media has been systematically reinvestigated by laser flash-quench kinetics as a model system for PCET in radical enzymes and in photochemical energy conversion. Previous kinetic studies on Ru-TyrOH molecules (Sjödin et al. J. Am. Chem. Soc. 2000, 122, 3932; Irebo et al. J. Am. Chem. Soc. 2007, 129, 15462) have established two mechanisms. Concerted electron-proton (CEP) transfer has been observed when pH < pK(a)(TyrOH), which is pH-dependent but not first-order in [OH(-)] and not dependent on the buffer concentration when it is sufficiently low (less than ca. 5 mM). In addition, the pH-independent rate constant for electron transfer from tyrosine phenolate (TyrO(-)) was reported at pH >10. Here we compare the PCET rates and kinetic isotope effects (k(H)/k(D)) of four Ru-TyrOH molecules with varying Ru(III/II) oxidant strengths over a pH range of 1-12.5. On the basis of these data, two additional mechanistic regimes were observed and identified through analysis of kinetic competition and kinetic isotope effects (KIE): (i) a mechanism dominating at low pH assigned to a stepwise electron-first PCET and (ii) a stepwise proton-first PCET with OH(-) as proton acceptor that dominates around pH = 10. The effect of solution pH and electrochemical potential of the Ru(III/II) oxidant on the competition between the different mechanisms is discussed. The systems investigated may serve as models for the mechanistic diversity of PCET reactions in general with water (H(2)O, OH(-)) as primary proton acceptor.

Complex Förster energy transfer interactions between semiconductor quantum dots and a redox-active osmium assembly.

The ability of luminescent semiconductor quantum dots (QDs) to engage in diverse energy transfer processes with organic dyes, light-harvesting proteins, metal complexes, and redox-active labels continues to stimulate interest in developing them for biosensing and light-harvesting applications. Within biosensing configurations, changes in the rate of energy transfer between the QD and the proximal donor, or acceptor, based upon some external (biological) event form the principle basis for signal transduction. However, designing QD sensors to function optimally is predicated on a full understanding of all relevant energy transfer mechanisms. In this report, we examine energy transfer between a range of CdSe-ZnS core-shell QDs and a redox-active osmium(II) polypyridyl complex. To facilitate this, the Os complex was synthesized as a reactive isothiocyanate and used to label a hexahistidine-terminated peptide. The Os-labeled peptide was ratiometrically self-assembled to the QDs via metal affinity coordination, bringing the Os complex into close proximity of the nanocrystal surface. QDs displaying different emission maxima were assembled with increasing ratios of Os-peptide complex and subjected to detailed steady-state, ultrafast transient absorption, and luminescence lifetime decay analyses. Although the possibility exists for charge transfer quenching interactions, we find that the QD donors engage in relatively efficient Förster resonance energy transfer with the Os complex acceptor despite relatively low overall spectral overlap. These results are in contrast to other similar QD donor-redox-active acceptor systems with similar separation distances, but displaying far higher spectral overlap, where charge transfer processes were reported to be the dominant QD quenching mechanism.

Intersystem crossing involving strongly spin exchange-coupled radical ion pairs in donor-bridge-acceptor molecules.

Intersystem crossing involving photogenerated strongly spin exchange-coupled radical ion pairs in a series of donor-bridge-acceptor molecules was examined. These molecules have a 3,5-dimethyl-4-(9-anthracenyl)-julolidine (DMJ-An) donor either connected directly or connected by a phenyl bridge (Ph), to pyromellitimide (PI), 1 and 2, respectively, or naphthalene-1,8:4,5-bis(dicarboximide) (NI) acceptors, 3 and 4, respectively. Femtosecond transient optical absorption spectroscopy shows that photodriven charge separation produces DMJ(+•)-PI(-•) or DMJ(+•)-NI(-•) quantitatively in 1-4 (τ(CS) ≤ 10 ps), and that charge recombination occurs with τ(CR) = 268 and 158 ps for 1 and 3, respectively, and with τ(CR) = 2.6 and 10 ns for 2 and 4, respectively. Magnetic field effects (MFEs) on the neutral triplet state yield produced by charge recombination were used to measure the exchange coupling (2J) between DMJ(+•) and PI(-•) or NI(-•), giving 2J > 600 mT for 1-3 and 2J = 170 mT for 4. Time-resolved electron paramagnetic resonance (TREPR) spectroscopy revealed that the formation of (3)*An upon charge recombination occurs by spin-orbit charge transfer intersystem crossing (SOCT-ISC) and/or radical-pair intersystem crossing (RP-ISC) mechanisms with the magnitude of 2J determining which triplet formation mechanism dominates. SOCT-ISC is the exclusive triplet formation mechanism in 1-3, whereas both RP-ISC and SOCT-ISC are active for 4. The triplet sublevels populated by SOCT-ISC in 1-4 depend on the donor-acceptor geometry in the charge separated state. This is consistent with the fact that the SOCT-ISC mechanism requires the relevant donor and acceptor orbitals to be nearly perpendicular, so that electron transfer results in a large orbital angular momentum change that must be compensated by a fast spin flip to conserve overall system angular momentum.

CdSe/ZnS core shell quantum dot-based FRET binary oligonucleotide probes for detection of nucleic acids.

We report the design, synthesis, and characterization of a binary oligonucleotideprobe for selective DNA or RNA detection. The probe is based on fluorescence resonance energy transfer (FRET) from quantum dot (CdSe/ZnS core shell) DNA conjugates to organic dye (cyanine-5) DNA conjugates. Selective hybridization of the donor/acceptor DNA conjugates to target DNA enhances FRET and a change in fluorescence signature was observed.

Temperature dependence of spin-selective charge transfer pathways in donor-bridge-acceptor molecules with oligomeric fluorenone and p-phenylethynylene bridges.

The temperature dependence of spin-selective intramolecular charge recombination (CR) in a series of 2,7-fluorenone (FN(1-2)) and p-phenylethynylene (PE(1-2)P) linked donor-bridge-acceptor molecules with a 3,5-dimethyl-4-(9-anthracenyl) julolidine (DMJ-An) electron donor and a naphthalene-1,8:4,5-bis(dicarboximide) (NI) acceptor was studied using nanosecond transient absorption spectroscopy in the presence of a static magnetic field. Photoexcitation of DMJ-An into its charge transfer band and subsequent electron transfer to NI results in a nearly quantitative yield of (1)(DMJ(+•)-An-FN(n)-NI(-•)) and (1)(DMJ(+•)-An-PE(n)P-NI(-•)), which undergo rapid radical pair intersystem crossing (RP-ISC) to produce the triplet RPs, (3)(DMJ(+•)-An-FN(n)-NI(-•)) and (3)(DMJ(+•)-An-PE(n)P-NI(-•)), respectively. The CR rate constants, k(CR), in toluene were measured over a temperature range from 270 to 350 K, and a kinetic analysis of k(CR) in the presence of an applied static magnetic field was used to extract the singlet and triplet charge recombination rate constants, k(CRS) and k(CRT), respectively, as well as the intersystem crossing rate constant, k(ST). Plots of ln (kT(1/2)) versus 1/T for PE(1)P show a distinct crossover at 300 K from a temperature-independent singlet CR pathway to a triplet CR pathway that is positively activated with a barrier of 1047 ± 170 cm(-1). The singlet CR pathway via the FN(1) bridge displays a negative activation energy that results from donor-bridge and bridge-acceptor torsional motions about the single bonds joining them. In contrast, the triplet CR pathway via the FN(1-2) and PE(1-2)P bridges exhibits positive activation energies. The activation barriers to these torsional motions range from 1100 to 4500 cm(-1) and can be modeled by semiclassical electron transfer theory.

Magnetic field-induced switching of the radical-pair intersystem crossing mechanism in a donor-bridge-acceptor molecule for artificial photosynthesis.

A covalent, fixed-distance donor-bridge-acceptor (D-B-A) molecule was synthesized that upon photoexcitation undergoes ultrafast charge separation to yield a radical ion pair (RP) in which the spin-spin exchange interaction (2J) between the two radicals is sufficiently large to result in preferential RP intersystem crossing to the highest-energy RP eigenstate (T(+1)) at the 350 mT magnetic field characteristic of X-band (9.5 GHz) EPR spectroscopy. This behavior is unprecedented in covalent D-B-A molecules, and is evidenced by the time-resolved EPR (TREPR) spectrum at X-band of (3*)D-B-A derived from RP recombination, which shows all six canonical EPR transitions polarized in emission (e,e,e,e,e,e). In contrast, when the RP is photogenerated in a 3400 mT magnetic field, the TREPR triplet spectrum at W-band (94 GHz) of (3*)D-B-A displays the (a,e,e,a,a,e) polarization pattern characteristic of a weakly coupled RP precursor, similar to that observed in photosynthetic reaction center proteins, and indicates a switch to selective population of the lower-energy T(0) eigenstate.

Controlling electron transfer in donor-bridge-acceptor molecules using cross-conjugated bridges.

Photoinitiated charge separation (CS) and recombination (CR) in a series of donor-bridge-acceptor (D-B-A) molecules with cross-conjugated, linearly conjugated, and saturated bridges have been compared and contrasted using time-resolved spectroscopy. The photoexcited charge transfer state of 3,5-dimethyl-4-(9-anthracenyl)julolidine (DMJ-An) is the donor, and naphthalene-1,8:4,5-bis(dicarboximide) (NI) is the acceptor in all cases, along with 1,1-diphenylethene, trans-stilbene, diphenylmethane, and xanthone bridges. Photoinitiated CS through the cross-conjugated 1,1-diphenylethene bridge is about 30 times slower than through its linearly conjugated trans-stilbene counterpart and is comparable to that observed through the diphenylmethane bridge. This result implies that cross-conjugation strongly decreases the π orbital contribution to the donor-acceptor electronic coupling so that electron transfer most likely uses the bridge σ system as its primary CS pathway. In contrast, the CS rate through the cross-conjugated xanthone bridge is comparable to that observed through the linearly conjugated trans-stilbene bridge. Molecular conductance calculations on these bridges show that cross-conjugation results in quantum interference effects that greatly alter the through-bridge donor-acceptor electronic coupling as a function of charge injection energy. These calculations display trends that agree well with the observed trends in the electron transfer rates.

Comparing spin-selective charge transport through donor-bridge-acceptor molecules with different oligomeric aromatic bridges.

Burning bridges: The exponential distance dependence (ß value) of singlet and triplet charge recombination (CR) pathways is determined for three donor-bridge-acceptor (DBA) molecules. p-Phenylethynylene and fluorenone bridges have similar ß values, which differ significantly from those of p-phenylene bridges, thus implying that ß for both singlet and triplet CR is system-dependent, not bridge-specific.