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1.
J Phys Chem B ; 117(43): 13572-7, 2013 Oct 31.
Article in English | MEDLINE | ID: mdl-24073925

ABSTRACT

Small-molecule amphiphiles such as aspirin have unique properties arising from a combination of an aromatic hydrophobic part and a hydrophilic part. We show that crystals of aspirin are capable of generating convective flows at the air-aqueous interface from both Marangoni effects (through weak surface activity) and capillarity (surface deformations). The flow-driven motion of millimeter-sized crystals was found to depend on the presence of other ions in solution as well as the distance and orientation of the crystals. The interactions lead to the formation of groups of two or more crystals that also underwent motion. The convective flows created by small amphiphile crystals might be exploited in the dynamic self-organization of particles at interfaces.


Subject(s)
Aspirin/chemistry , Air , Crystallization , Hydrophobic and Hydrophilic Interactions , Motion , Particle Size , Surface Properties , Water/chemistry
2.
Biophys J ; 103(3): 610-615, 2012 Aug 08.
Article in English | MEDLINE | ID: mdl-22947878

ABSTRACT

The urease-catalyzed hydrolysis of urea displays feedback that results in a switch from acid (pH ~3) to base (pH ~9) after a controllable period of time (from 10 to >5000 s). Here we show that the spatially distributed reaction can support pH wave fronts propagating with a speed of the order of 0.1-1 mm min(-1). The experimental results were reproduced qualitatively in reaction-diffusion simulations including a Michaelis-Menten expression for the urease reaction with a bell-shaped rate-pH dependence. However, this model fails to predict that at lower enzyme concentrations, the unstirred reaction does not always support fronts when the well-stirred reaction still rapidly switches to high pH.


Subject(s)
Models, Chemical , Urea/metabolism , Urease/metabolism , Diffusion , Feedback , Hydrogen-Ion Concentration , Hydrolysis , Kinetics , Protein Binding
3.
J Phys Chem B ; 114(44): 14059-63, 2010 Nov 11.
Article in English | MEDLINE | ID: mdl-20954690

ABSTRACT

The bell-shaped rate-pH curve coupled to production of base in the urea-urease reaction was utilized to give feedback-driven behavior: an acid-to-base pH clock (a kinetic switch), bistability and hysteresis between an acid/base state when the initial pH was adjusted by a strong acid, and aperiodic pH oscillations when the initial pH was adjusted by a weak acid in an open reactor. A simple model of the reaction reproduced most of the experimental results and provided insight into the role of self-buffering in the dynamics. This reaction suggests new possibilities in the development of biocompatible feedback to couple to pH-sensitive processes for bioinspired applications in medicine, engineering, or materials science.


Subject(s)
Biocatalysis , Feedback, Physiological , Urea/metabolism , Urease/metabolism , Biomimetics , Enzyme Stability , Hydrogen-Ion Concentration , Kinetics , Models, Chemical , Protein Binding
4.
Phys Rev E Stat Nonlin Soft Matter Phys ; 77(4 Pt 2): 046215, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18517718

ABSTRACT

The simple proportional feedback (SPF) control algorithm may, in principle, be used to attain periodic oscillations in dynamic systems exhibiting low-dimensional chaos. However, if implemented within a discrete control framework with sampling frequency limitations, controller performance may deteriorate. This phenomenon is illustrated using simulations of a chaotic autocatalytic reaction system. A two-dimensional (2D) SPF controller that explicitly takes into account some of the problems caused by limited sampling rates is then derived by introducing suitable modifications to the original SPF method. Using simulations, the performance of the 2D-SPF controller is compared to that of a conventional SPF control law when implemented as a sampled data controller. Two versions of the 2D-SPF controller are described: linear (L2D-SPF) and quadratic (Q2D-SPF). The performance of both the L2D-SPF and Q2D-SPF controllers is shown to be superior to the SPF when controller sampling frequencies are decreased. Furthermore, it is demonstrated that the Q2D-SPF controller provides better fixed point stabilization compared to both the L2D-SPF and the conventional SPF when concentration measurements are corrupted by noise.

5.
Phys Chem Chem Phys ; 10(5): 749-53, 2008 Feb 07.
Article in English | MEDLINE | ID: mdl-19791459

ABSTRACT

This paper reports on the influence of oscillations on product selectivity as well as the dynamics of product formation during the palladium-catalysed phenylacetylene oxidative carbonylation reaction in a catalytic system (PdI2, KI, Air, NaOAc in methanol). The occurrence of the pH oscillations is related to PdI2 granularity and the initial pH drop after phenylacetylene addition. To achieve pH and reaction exotherm oscillations regulation of the amount of PdI2 is required, ensuring that the initial pH does not fall significantly below 1 after phenylacetylene addition. Experiments in both oscillatory and non-oscillatory pH regimes were performed in an HEL SIMULAR reaction calorimeter with the concentration-time profiles measured using a GC-MS. It is demonstrated that when operating in an oscillatory pH regime product formation may be suppressed until oscillations occur after which there is a steep increase in the formation of Z-2-phenyl-but-2-enedioic acid dimethyl ester. When operating in non-oscillatory pH mode the products are formed steadily over time with the main products being Z-2-phenyl-but-2-enedioic acid dimethyl ester, 2-phenyl-acrylic acid methyl ester and E-3-phenyl-acrylic acid methyl ester.

6.
Phys Chem Chem Phys ; 9(28): 3711-6, 2007 Jul 28.
Article in English | MEDLINE | ID: mdl-17622405

ABSTRACT

The Methylene Glycol-Sulfite-Gluconolactone (MGSG) reaction is the first example of an organic-based pH oscillator. This reaction is of particular interest as it displays large amplitude oscillations in hydroxide ion accompanied by small amplitude (10(-3) V) oscillations in potential, indicating that it is not driven by redox processes. We investigate the reaction in a batch (closed) and flow (open) reactor and examine the role of the aging of the gluconolactone stock solution. The system is found to display oscillations and bistability for a wide range of flow rates and initial compositions. The experimental results are reproduced in numerical simulations in an extended model of the reaction in which the decay of the stock solution is incorporated. Finally, we analyse the features of the reaction that make it a suitable basis for the development of novel pH oscillators.

7.
J Phys Chem A ; 111(4): 549-51, 2007 Feb 01.
Article in English | MEDLINE | ID: mdl-17249741

ABSTRACT

In a recent paper, we suggested that the acid- or base-catalyzed dehydration of a hydrated carbonyl compound provides a suitable foundation for an organic-based pH oscillator. Here we present the first experimental example of such an oscillator in a flow reactor, utilizing the base-catalyzed dehydration of methylene glycol as a source of positive feedback (OH- autocatalysis) coupled with the base-catalyzed hydrolysis of gluconolactone for negative feedback (H+ production). The large amplitude oscillations (between pH 7 and 10) are reproduced in a kinetic model of the reaction. Such experiments present new possibilities in the design of pH oscillators.


Subject(s)
Chemistry, Physical/methods , Oscillometry/methods , Anions , Biophysics/methods , Carbon/chemistry , Chemistry, Organic/methods , Glucose Oxidase/chemistry , Glycols/chemistry , Hydrogen-Ion Concentration , Kinetics , Models, Chemical , Sulfites/chemistry
8.
J Phys Chem A ; 109(37): 8306-13, 2005 Sep 22.
Article in English | MEDLINE | ID: mdl-16834220

ABSTRACT

The formation of stationary concentration patterns in a packed-bed reactor (PBR), using a manganese-catalyzed Belousov-Zhabotinsky (BZ) reaction in a mixed sulfuric-phosphoric acid medium, was studied using magnetic resonance imaging (MRI). The PBR was composed of a column filled with glass beads, which was fed by a continuous stirred tank reactor (CSTR). As the reactor is optically opaque, investigation of the three-dimensional (3D) structure of these reaction-diffusion-advection waves is not possible using conventional image capture techniques. MRI has been used to probe this system and the formation, 3D structure, and development of these waves has been studied. At reactor startup, traveling waves were observed. After this initial period the waves stabilized and became stationary. Once fixed, they were found to be remarkably stable. There was significant heterogeneity of the reaction fronts, which were not flat, as would be expected from a plug-flow reactor. Instead, the reaction wave fronts were observed to be conical in shape due to the local hydrodynamics of the bed and specifically the higher velocities and therefore lower residence times close to the wall of the reactor.


Subject(s)
Magnetic Resonance Imaging/methods , Catalysis , Kinetics , Manganese , Models, Molecular , Models, Theoretical , Molecular Conformation , Oscillometry , Phenanthrolines , Phosphoric Acids , Sulfuric Acids
9.
Phys Rev E Stat Nonlin Soft Matter Phys ; 68(3 Pt 2): 036210, 2003 Sep.
Article in English | MEDLINE | ID: mdl-14524871

ABSTRACT

The steady, spherically symmetric solutions to the reaction-diffusion equations based on a simple autocatalytic reaction followed by the decay of the autocatalyst are considered. Three parameters-the orders with respect to the autocatalyst in the autocatalysis p and in the decay q and the rate of decay of the autocatalyst relative to its autocatalytic production K-determine the steady concentration profiles. Numerical integrations for a fixed value of the order of the autocatalyst show that the concentration profiles have different forms depending on whether q

/=p. In the former case, there is a critical decay rate K(crit) for solutions to exist, with multiple solutions for K

10.
Phys Rev E Stat Nonlin Soft Matter Phys ; 66(1 Pt 2): 016207, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12241461

ABSTRACT

The existence of steady, spherically symmetric wave fronts ("isothermal flame balls") in chemical reaction systems exhibiting autocatalysis is demonstrated. Such solutions require relatively high kinetic orders p with respect to the autocatalytic species, with p>5, but occur even with equal diffusion coefficients. The flame balls are unstable, but have relevance as they indicate the minimum size for a perturbation to initiate a propagating front. A flame ball radius R(b) is identified and the dependence of this quantity on the autocatalytic order is determined. This shows R(b) tending to infinity as p-->5(+) and as p--> infinity, with a minimum for p approximately 6.71. Numerical computations are confirmed by asymptotic analysis appropriate for p-->5(+) and for systems with p large.

11.
Chaos ; 11(3): 479-486, 2001 Sep.
Article in English | MEDLINE | ID: mdl-12779485

ABSTRACT

The problem of chemical reaction-diffusion wave propagation through a random, heterogeneous medium is considered using a model based on cubic autocatalysis with decay. The autocatalyst is taken to diffuse and react through a reactant loaded at constant initial concentration in a reaction domain except that there may be gaps of arbitrary width in which the reactant concentration is zero. We first study the propagation of a permanent-form wave across a single gap and determine the critical width of the gap in terms of the kinetic parameters in the system. The numerical results are compared with an analytical estimate. Next, the critical conditions for propagation across two gaps separated by a domain are determined numerically, and this is extended to a series of three gaps. From these results, a series of "rules" is established to allow us to predict whether a wave will pass through an arbitrary random array of gaps of a given size subject to some imposed total void fraction for the material. (c) 2001 American Institute of Physics.

12.
Chaos ; 7(2): 350-358, 1997 Jun.
Article in English | MEDLINE | ID: mdl-12779662

ABSTRACT

The recent observations of transient complex oscillations in the Belousov-Zhabotinsky (BZ) reaction in a batch reactor are confirmed and an attempt is made to model this behavior using the Gyorgyi-Field mechanism (an extension of the classic Field-Koros-Noyes model). It is seen that the concentration of bromomalonic acid plays an important role, acting somewhat like a "slowly-varying parameter," causing the system to sweep through a region of oscillatory response even in the absence of reactant consumption. Complex behavior is not observed in the model if the usual "pre-equilibrium" assumption in made for the intermediate species BrO(2) but does arise if a full steady-state approximation is applied to this radical. These results may bring into question some assumptions made in the usual treatment of the cerium-catalyzed BZ system in closed reactors. (c) 1997 American Institute of Physics.

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