Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 63
Filter
1.
J Neurosci ; 43(9): 1475-1491, 2023 03 01.
Article in English | MEDLINE | ID: mdl-36732068

ABSTRACT

Synaptotagmin 9 (SYT9) is a tandem C2 domain Ca2+ sensor for exocytosis in neuroendocrine cells; its function in neurons remains unclear. Here, we show that, in mixed-sex cultures, SYT9 does not trigger rapid synaptic vesicle exocytosis in mouse cortical, hippocampal, or striatal neurons, unless it is massively overexpressed. In striatal neurons, loss of SYT9 reduced the frequency of spontaneous neurotransmitter release events (minis). We delved into the underlying mechanism and discovered that SYT9 was localized to dense-core vesicles that contain substance P (SP). Loss of SYT9 impaired SP release, causing the observed decrease in mini frequency. This model is further supported by loss of function mutants. Namely, Ca2+ binding to the C2A domain of SYT9 triggered membrane fusion in vitro, and mutations that disrupted this activity abolished the ability of SYT9 to regulate both SP release and mini frequency. We conclude that SYT9 indirectly regulates synaptic transmission in striatal neurons by controlling SP release.SIGNIFICANCE STATEMENT Synaptotagmin 9 (SYT9) has been described as a Ca2+ sensor for dense-core vesicle (DCV) exocytosis in neuroendocrine cells, but its role in neurons remains unclear, despite widespread expression in the brain. This article examines the role of SYT9 in synaptic transmission across cultured cortical, hippocampal, and striatal neuronal preparations. We found that SYT9 regulates spontaneous neurotransmitter release in striatal neurons by serving as a Ca2+ sensor for the release of the neuromodulator substance P from DCVs. This demonstrates a novel role for SYT9 in neurons and uncovers a new field of study into neuromodulation by SYT9, a protein that is widely expressed in the brain.


Subject(s)
Substance P , Synaptic Vesicles , Animals , Mice , Synaptotagmins/metabolism , Substance P/metabolism , Synaptic Vesicles/metabolism , Synaptic Transmission/physiology , Neurons/metabolism , Exocytosis , Neurotransmitter Agents/metabolism , Synaptotagmin I/metabolism , Calcium/metabolism
2.
Elife ; 122023 02 02.
Article in English | MEDLINE | ID: mdl-36729040

ABSTRACT

Neurotransmitter-filled synaptic vesicles (SVs) mediate synaptic transmission and are a hallmark specialization in neuronal axons. Yet, how SV proteins are sorted to presynaptic nerve terminals remains the subject of debate. The leading model posits that these proteins are randomly trafficked throughout neurons and are selectively retained in presynaptic boutons. Here, we used the RUSH (retention using selective hooks) system, in conjunction with HaloTag labeling approaches, to study the egress of two distinct transmembrane SV proteins, synaptotagmin 1 and synaptobrevin 2, from the soma of mature cultured rat and mouse neurons. For these studies, the SV reporter constructs were expressed at carefully controlled, very low levels. In sharp contrast to the selective retention model, both proteins selectively and specifically entered axons with minimal entry into dendrites. However, even moderate overexpression resulted in the spillover of SV proteins into dendrites, potentially explaining the origin of previous non-polarized transport models, revealing the limited, saturable nature of the direct axonal trafficking pathway. Moreover, we observed that SV constituents were first delivered to the presynaptic plasma membrane before incorporation into SVs. These experiments reveal a new-found membrane trafficking pathway, for SV proteins, in classically polarized mammalian neurons and provide a glimpse at the first steps of SV biogenesis.


Subject(s)
Nerve Tissue Proteins , Synaptic Vesicles , Animals , Rats , Mice , Synaptic Vesicles/metabolism , Nerve Tissue Proteins/metabolism , Neurons/physiology , Axons/metabolism , Presynaptic Terminals/metabolism , Membrane Proteins/metabolism , Synaptic Transmission , Cells, Cultured , Mammals/metabolism
3.
Biotechnol Biofuels ; 10: 16, 2017.
Article in English | MEDLINE | ID: mdl-28115988

ABSTRACT

In this review, a simple procedure that portends the open-pond growth of commercially viable diatoms is discussed. We examined a number of topics relevant to the production and harvesting of diatoms as well as topics concerning the production of bioproducts from diatoms. Among the former topics, we show that it is currently possible to continuously grow diatoms and control the presence of invasive species without chemical toxins at an average annual yield of 132 MT dry diatoms ha-1 over a period of almost 5 years, while maintaining the dominancy of the optimal diatom species on a seasonal basis. The dominant species varies during the year. The production of microalgae is essentially agriculture, but without the ability to control invasive species in the absence of herbicides and insecticides, pollution and production costs would be prohibitive. Among the latter topics are the discussions of whether it is better to produce lipids and then convert them to biofuels or maximize the production of diatom biomass and then convert it to biocrude products using, for example, hydrothermal processes. It is becoming increasingly evident that without massive public support, the commercial production of microalgal biofuels alone will remain elusive. While economically competitive production of biofuels from diatoms will be difficult, when priority is given to multiple high-value products, including wastewater treatment, and when biofuels are considered co-products in a systems approach to commercial production of diatoms, an economically competitive process will become more likely.

4.
J Bioenerg Biomembr ; 48(3): 227-40, 2016 06.
Article in English | MEDLINE | ID: mdl-26847716

ABSTRACT

We have investigated the interaction of Fe(II) cations with Ca-depleted PSII membranes (PSII[-Ca,4Mn]) in the dark and found that Fe(II) incubation removes 2 of 4 Mn ions from the tetranuclear Mn cluster of the photosynthetic O2-evolving complex (OEC). The reduction of Mn ions in PSII(-Ca,4Mn) by Fe(II) and the concomitant release of two Mn(II) cations is accompanied by the binding of newly generated Fe(III) in at least one vacated Mn site. Flash-induced chlorophyll (Chl) fluorescence yield measurements of this new 2Mn/nFe cluster (PSII[-Ca,2Mn,nFe]) show that charge recombination in the presence of 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU) occurs between Qa (-) and the remaining Mn/Fe cluster (but not YZ (●)) in the OEC, and extraction of 2 Mn occurs uniformly in all PSII complexes. No O2 evolution is observed, but the heteronuclear metal cluster in PSII(-Ca,2Mn,nFe) samples is still able to supply electrons for reduction of the exogenous electron acceptor, 2,6-dichlorophrenolindophenol, by photooxidizing water and producing H2O2 in the absence of an exogenous donor as seen previously with PSII(-Ca,4Mn). Selective extraction of Mn or Fe cations from the 2Mn/nFe heteronuclear cluster demonstrates that the high-affinity Mn-binding site is occupied by one of the iron cations. It is notable that partial water-oxidation function still occurs when only two Mn cations are present in the PSII OEC.


Subject(s)
Iron/chemistry , Manganese/chemistry , Photosynthesis , Photosystem II Protein Complex/chemistry , Water/metabolism , Binding Sites , Electron Transport , Ferric Compounds/chemistry , Oxidation-Reduction , Oxygen/metabolism , Spinacia oleracea
5.
J Proteome Res ; 13(12): 5431-51, 2014 Dec 05.
Article in English | MEDLINE | ID: mdl-25333711

ABSTRACT

Chlamydomonas reinhardtii is well adapted to survive under different environmental conditions due to the unique flexibility of its metabolism. Here we report metabolic pathways that are active during acclimation to anoxia, but were previously not thoroughly studied under dark, anoxic H2-producing conditions in this model green alga. Proteomic analyses, using 2D-differential in-gel electrophoresis in combination with shotgun mass fingerprinting, revealed increased levels of proteins involved in the glycolytic pathway downstream of 3-phosphoglycerate, the glyoxylate pathway, and steps of the tricarboxylic acid (TCA) reactions. Upregulation of the enzyme, isocitrate lyase (ICL), was observed, which was accompanied by increased intracellular succinate levels, suggesting the functioning of glyoxylate pathway reactions. The ICL-inhibitor study revealed presence of reverse TCA reactions under these conditions. Contributions of the serine-isocitrate lyase pathway, glycine cleavage system, and c1-THF/serine hydroxymethyltransferase pathway in the acclimation to dark anoxia were found. We also observed increased levels of amino acids (AAs) suggesting nitrogen reorganization in the form of de novo AA biosynthesis during anoxia. Overall, novel routes for reductant utilization, in combination with redistribution of carbon and nitrogen, are used by this alga during acclimation to O2 deprivation in the dark.


Subject(s)
Chlamydomonas reinhardtii/genetics , Chlamydomonas reinhardtii/metabolism , Gene Expression Profiling/methods , Hydrogen/metabolism , Metabolomics/methods , Proteomics/methods , Algal Proteins/genetics , Algal Proteins/metabolism , Amino Acids/metabolism , Anaerobiosis , Blotting, Western , Carbon/metabolism , Darkness , Electrophoresis, Gel, Two-Dimensional , Gas Chromatography-Mass Spectrometry , Mass Spectrometry , Metabolic Networks and Pathways/genetics , Metabolome , Nitrogen/metabolism , Proteome/metabolism , Reverse Transcriptase Polymerase Chain Reaction
6.
Photosynth Res ; 117(1-3): 385-99, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23794169

ABSTRACT

Extraction of Ca(2+) from the oxygen-evolving complex of photosystem II (PSII) in the absence of a chelator inhibits O2 evolution without significant inhibition of the light-dependent reduction of the exogenous electron acceptor, 2,6-dichlorophenolindophenol (DCPIP) on the reducing side of PSII. The phenomenon is known as "the decoupling effect" (Semin et al. Photosynth Res 98:235-249, 2008). Extraction of Cl(-) from Ca(2+)-depleted membranes (PSII[-Ca]) suppresses the reduction of DCPIP. In the current study we investigated the nature of the oxidized substrate and the nature of the product(s) of the substrate oxidation. After elimination of all other possible donors, water was identified as the substrate. Generation of reactive oxygen species HO, H2O2, and O 2 (·-) , as possible products of water oxidation in PSII(-Ca) membranes was examined. During the investigation of O 2 (·-) production in PSII(-Ca) samples, we found that (i) O 2 (·-) is formed on the acceptor side of PSII due to the reduction of O2; (ii) depletion of Cl(-) does not inhibit water oxidation, but (iii) Cl(-) depletion does decrease the efficiency of the reduction of exogenous electron acceptors. In the absence of Cl(-) under aerobic conditions, electron transport is diverted from reducing exogenous acceptors to reducing O2, thereby increasing the rate of O 2 (·-) generation. From these observations we conclude that the product of water oxidation is H2O2 and that Cl(-) anions are not involved in the oxidation of water to H2O2 in decoupled PSII(-Ca) membranes. These results also indicate that Cl(-) anions are not directly involved in water oxidation by the Mn cluster in the native PSII membranes, but possibly provide access for H2O molecules to the Mn4CaO5 cluster and/or facilitate the release of H(+) ions into the lumenal space.


Subject(s)
Calcium/metabolism , Chlorides/metabolism , Photosystem II Protein Complex/metabolism , Reactive Oxygen Species/metabolism , Spinacia oleracea/metabolism , 2,6-Dichloroindophenol/metabolism , Amino Acids/metabolism , Cytochromes c/metabolism , Hydrogen Peroxide/metabolism , Hydrogen-Ion Concentration , Hydroxyl Radical/metabolism , Light , Oxidation-Reduction , Oxygen/metabolism , Spinacia oleracea/radiation effects , Substrate Specificity/radiation effects , Superoxides/metabolism , Water/metabolism
7.
J Phys Chem B ; 116(38): 11780-90, 2012 Sep 27.
Article in English | MEDLINE | ID: mdl-22957798

ABSTRACT

Chlorophyll-protein complexes are ideal model systems for protein energy landscape research. Here pigments, used in optical spectroscopy experiments as sensitive probes to local dynamics, are built into protein by Nature (in a large variety of local environments; without extraneous chemical manipulations or genetic engineering). Distributions of the tunneling parameter, λ, and/or protein energy landscape barrier heights, V, have been determined for (the lowest energy state of) the CP43 core antenna complex of photosystem II. We demonstrate that spectral hole burning (SHB) and hole recovery (HR) measurements are capable of delivering important information on protein energy landscape properties and spectral diffusion mechanism details. In particular, we show that tunneling rather than barrier hopping is responsible for both persistent SHB and subsequent HR at 5-12 K, which allows us to estimate the md(2) parameter of the tunneling entities as ~1.0 × 10(-46) kg·m(2). The subdistributions of λ actually contributing to the nonsaturated spectral holes (and affecting their recovery) differ from the respective full true distributions. In the case of the full λ-distribution being uniform (or the barrier height distribution ~1/√V, a model which has been widely employed in theories of amorphous solids at low temperatures and in HR analysis), the difference is qualitative, with λ subdistributions probed in the HR experiments being highly asymmetrical, and barrier V subdistributions deviating significantly from ~1/√V. Thus, the distribution of λ for the protein energy landscape tier directly probed by SHB is likely Gaussian and not uniform. Additionally, a Gaussian distribution of barriers, with parameters incompatible with those of the landscape tier directly probed by SHB, contributes to the thermocycling results.


Subject(s)
Chlorophyll/chemistry , Photosystem II Protein Complex/chemistry , Temperature , Porosity , Surface Properties
8.
J Ind Microbiol Biotechnol ; 39(9): 1269-78, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22592947

ABSTRACT

We describe a latex wet coalescence method for gas-phase immobilization of microorganisms on paper which does not require drying for adhesion. This method reduces drying stresses to the microbes. It is applicable for microorganisms that do not tolerate desiccation stress during latex drying even in the presence of carbohydrates. Small surface area, 10-65 µm thick coatings were generated on chromatography paper strips and placed in the head-space of vertical sealed tubes containing liquid to hydrate the paper. These gas-phase microbial coatings hydrated by liquid in the paper pore space demonstrated absorption or evolution of H2, CO, CO2 or O2. The microbial products produced, ethanol and acetate, diffuse into the hydrated paper pores and accumulate in the liquid at the bottom of the tube. The paper provides hydration to the back side of the coating and also separates the biocatalyst from the products. Coating reactivity was demonstrated for Chlamydomonas reinhardtii CC124, which consumed CO2 and produced 10.2 ± 0.2 mmol O2 m⁻² h⁻¹, Rhodopseudomonas palustris CGA009, which consumed acetate and produced 0.47 ± 0.04 mmol H2 m⁻² h⁻¹, Clostridium ljungdahlii OTA1, which consumed 6 mmol CO m⁻² h⁻¹, and Synechococcus sp. PCC7002, which consumed CO2 and produced 5.00 ± 0.25 mmol O2 m⁻² h⁻¹. Coating thickness and microstructure were related to microbe size as determined by digital micrometry, profilometry, and confocal microscopy. The immobilization of different microorganisms in thin adhesive films in the gas phase demonstrates the utility of this method for evaluating genetically optimized microorganisms for gas absorption and gas evolution.


Subject(s)
Bacterial Adhesion , Gases/metabolism , Latex/chemistry , Paper , Rhodopseudomonas/metabolism , Absorption , Biocatalysis , Bioreactors , Carbon Dioxide/metabolism , Carbon Monoxide/metabolism , Gases/chemistry , Hydrogen/metabolism , Oxygen/metabolism , Rhodopseudomonas/growth & development
9.
Plant Cell ; 24(2): 692-707, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22353371

ABSTRACT

Chlamydomonas reinhardtii, a unicellular green alga, often experiences hypoxic/anoxic soil conditions that activate fermentation metabolism. We isolated three Chlamydomonas mutants disrupted for the pyruvate formate lyase (PFL1) gene; the encoded PFL1 protein catalyzes a major fermentative pathway in wild-type Chlamydomonas cells. When the pfl1 mutants were subjected to dark fermentative conditions, they displayed an increased flux of pyruvate to lactate, elevated pyruvate decarboxylation, ethanol accumulation, diminished pyruvate oxidation by pyruvate ferredoxin oxidoreductase, and lowered H(2) production. The pfl1-1 mutant also accumulated high intracellular levels of lactate, succinate, alanine, malate, and fumarate. To further probe the system, we generated a double mutant (pfl1-1 adh1) that is unable to synthesize both formate and ethanol. This strain, like the pfl1 mutants, secreted lactate, but it also exhibited a significant increase in the levels of extracellular glycerol, acetate, and intracellular reduced sugars and a decrease in dark, fermentative H(2) production. Whereas wild-type Chlamydomonas fermentation primarily produces formate and ethanol, the double mutant reroutes glycolytic carbon to lactate and glycerol. Although the metabolic adjustments observed in the mutants facilitate NADH reoxidation and sustained glycolysis under dark, anoxic conditions, the observed changes could not have been predicted given our current knowledge of the regulation of fermentation metabolism.


Subject(s)
Acetyltransferases/metabolism , Alcohol Dehydrogenase/metabolism , Chlamydomonas reinhardtii/metabolism , Fermentation , Acetyltransferases/genetics , Alcohol Dehydrogenase/genetics , Chlamydomonas reinhardtii/enzymology , Chlamydomonas reinhardtii/genetics , Ethanol/metabolism , Formates/metabolism , Gas Chromatography-Mass Spectrometry , Hydrogen/metabolism , Lactic Acid/metabolism , Molecular Sequence Data , Mutagenesis, Insertional , Oxidation-Reduction , Pyruvic Acid/metabolism
10.
Plant Physiol ; 158(3): 1293-305, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22271746

ABSTRACT

The green alga Chlamydomonas reinhardtii has numerous genes encoding enzymes that function in fermentative pathways. Among these, the bifunctional alcohol/acetaldehyde dehydrogenase (ADH1), highly homologous to the Escherichia coli AdhE enzyme, is proposed to be a key component of fermentative metabolism. To investigate the physiological role of ADH1 in dark anoxic metabolism, a Chlamydomonas adh1 mutant was generated. We detected no ethanol synthesis in this mutant when it was placed under anoxia; the two other ADH homologs encoded on the Chlamydomonas genome do not appear to participate in ethanol production under our experimental conditions. Pyruvate formate lyase, acetate kinase, and hydrogenase protein levels were similar in wild-type cells and the adh1 mutant, while the mutant had significantly more pyruvate:ferredoxin oxidoreductase. Furthermore, a marked change in metabolite levels (in addition to ethanol) synthesized by the mutant under anoxic conditions was observed; formate levels were reduced, acetate levels were elevated, and the production of CO(2) was significantly reduced, but fermentative H(2) production was unchanged relative to wild-type cells. Of particular interest is the finding that the mutant accumulates high levels of extracellular glycerol, which requires NADH as a substrate for its synthesis. Lactate production is also increased slightly in the mutant relative to the control strain. These findings demonstrate a restructuring of fermentative metabolism in the adh1 mutant in a way that sustains the recycling (oxidation) of NADH and the survival of the mutant (similar to wild-type cell survival) during dark anoxic growth.


Subject(s)
Alcohol Dehydrogenase/metabolism , Chlamydomonas reinhardtii/metabolism , Glycerol/metabolism , Plant Proteins/metabolism , Acetate Kinase/genetics , Acetate Kinase/metabolism , Acetates/metabolism , Acetyltransferases/genetics , Acetyltransferases/metabolism , Alcohol Dehydrogenase/genetics , Alcohol Dehydrogenase/physiology , Anaerobiosis , Blotting, Western , Carbon Dioxide/metabolism , Chlamydomonas reinhardtii/enzymology , Chlamydomonas reinhardtii/genetics , Chlamydomonas reinhardtii/physiology , Ethanol/metabolism , Fermentation , Formates/metabolism , Genes, Plant , Hydrogen/metabolism , Lactic Acid/metabolism , Metabolome , NAD/metabolism , Plant Proteins/genetics , Plant Proteins/physiology , Pyruvate Synthase/metabolism , Transcription, Genetic
11.
Biochem Biophys Res Commun ; 417(2): 704-9, 2012 Jan 13.
Article in English | MEDLINE | ID: mdl-22177948

ABSTRACT

Chlamydomonas reinhardtii (Chlamydomonas throughout) encodes two [FeFe]-hydrogenases, designated HYDA1 and HYDA2. While HYDA1 is considered the dominant hydrogenase, the role of HYDA2 is unclear. To study the individual functions of each hydrogenase and provide a platform for future bioengineering, we isolated the Chlamydomonas hydA1-1, hydA2-1 single mutants and the hydA1-1 hydA2-1 double mutant. A reverse genetic screen was used to identify a mutant with an insertion in HYDA2, followed by mutagenesis of the hydA2-1 strain coupled with a H(2) chemosensor phenotypic screen to isolate the hydA1-1 hydA2-1 mutant. Genetic crosses of the hydA1-1 hydA2-1 mutant to wild-type cells allowed us to also isolate the single hydA1-1 mutant. Fermentative, photosynthetic, and in vitro hydrogenase activities were assayed in each of the mutant genotypes. Surprisingly, analyses of the hydA1-1 and hydA2-1 single mutants, as well as the HYDA1 and HYDA2 rescued hydA1-1 hydA2-1 mutant demonstrated that both hydrogenases are able to catalyze H(2) production from either fermentative or photosynthetic pathways. The physiology of both mutant and complemented strains indicate that the contribution of HYDA2 to H(2) photoproduction is approximately 25% that of HYDA1, which corresponds to similarly low levels of in vitro hydrogenase activity measured in the hydA1-1 mutant. Interestingly, enhanced in vitro and fermentative H(2) production activities were observed in the hydA1-1 hydA2-1 strain complemented with HYDA1, while maximal H(2)-photoproduction rates did not exceed those of wild-type cells.


Subject(s)
Chlamydomonas reinhardtii/enzymology , Hydrogen/metabolism , Hydrogenase/metabolism , Iron-Sulfur Proteins/metabolism , Chlamydomonas reinhardtii/genetics , Hydrogenase/genetics , Iron-Sulfur Proteins/genetics , Mutagenesis, Insertional
12.
J Phys Chem B ; 115(50): 15098-109, 2011 Dec 22.
Article in English | MEDLINE | ID: mdl-22046956

ABSTRACT

Effects of the distributions of excitation energy transfer (EET) rates (homogeneous line widths) on the nonphotochemical (resonant) spectral hole burning (SHB) processes in photosynthetic chlorophyll-protein complexes (reaction center [RC] and CP43 antenna of Photosystem II from spinach) are considered. It is demonstrated that inclusion of such a distribution results in somewhat more dispersive hole burning kinetics. More importantly, however, inclusion of the EET rate distributions strongly affects the dependence of the hole width on the fractional hole depth. Different types of line width distributions have been explored, including those resulting from Förster type EET between weakly interacting pigments as well as Gaussian ones, which may be a reasonable approximation for those resulting, for instance, from so-called extended Förster models. For Gaussian line width distributions, it is possible to determine the parameters of both line width and tunneling parameter distributions from SHB data without a priori knowledge of any of them. Concerning more realistic asymmetric distributions, we demonstrate, using the simple example of CP43 antenna, that one can use SHB modeling to estimate electrostatic couplings between pigments and support or exclude assignment of certain pigment(s) to a particular state.


Subject(s)
Chlorophyll/metabolism , Energy Transfer , Photosystem II Protein Complex/metabolism , Temperature , Electron Transport , Kinetics , Models, Molecular , Normal Distribution , Photosystem II Protein Complex/chemistry , Protein Conformation , Spinacia oleracea/enzymology
13.
PLoS One ; 6(10): e25851, 2011.
Article in English | MEDLINE | ID: mdl-22043295

ABSTRACT

Biofuels derived from algal lipids represent an opportunity to dramatically impact the global energy demand for transportation fuels. Systems biology analyses of oleaginous algae could greatly accelerate the commercialization of algal-derived biofuels by elucidating the key components involved in lipid productivity and leading to the initiation of hypothesis-driven strain-improvement strategies. However, higher-level systems biology analyses, such as transcriptomics and proteomics, are highly dependent upon available genomic sequence data, and the lack of these data has hindered the pursuit of such analyses for many oleaginous microalgae. In order to examine the triacylglycerol biosynthetic pathway in the unsequenced oleaginous microalga, Chlorella vulgaris, we have established a strategy with which to bypass the necessity for genomic sequence information by using the transcriptome as a guide. Our results indicate an upregulation of both fatty acid and triacylglycerol biosynthetic machinery under oil-accumulating conditions, and demonstrate the utility of a de novo assembled transcriptome as a search model for proteomic analysis of an unsequenced microalga.


Subject(s)
Gene Expression Profiling , Microalgae/metabolism , Proteomics , Triglycerides/biosynthesis , Biofuels , Biosynthetic Pathways , Microalgae/genetics , Oils , Up-Regulation
14.
J Phys Chem B ; 115(45): 13339-49, 2011 Nov 17.
Article in English | MEDLINE | ID: mdl-21978372

ABSTRACT

The PSI-CP43' supercomplex of the cyanobacterium Synechocystis PCC 6803, grown under iron-starvation conditions, consists of a trimeric core Photosystem I (PSI) complex and an outer ring of 18 CP43' light-harvesting complexes. We have investigated the electronic structure and excitation energy transfer (EET) pathways within the CP43' (also known as the isiA gene product) ring using low-temperature absorption, fluorescence, fluorescence excitation, and hole-burning (HB) spectroscopies. Analysis of the absorption spectra of PSI, CP43', and PSI-CP43' complexes suggests that there are 13 chlorophylls (Chls) per CP43' monomer, i.e., a number that was observed in the CP43 complex of Photosystem II (PSII) (Umena, Y. et al. Nature 2011, 473, 55-60). This is in contrast with the recent modeling studies of Zhang et al. (Biochim. Biophys. Acta 2010, 1797, 457-465), which suggested that IsiA likely contains 15 Chls. Modeling studies of various optical spectra of the CP43' ring using the uncorrelated EET model (Zazubovich, V.; Jankowiak, R. J. Lumin. 2007, 127, 245-250) suggest that CP43' monomers (in analogy to the CP43 complexes of the PSII core) also possess two quasi-degenerate low-energy states, A' and B'. The site distribution functions of states A' and B' maxima/full width at half-maximum (fwhm) are at 684 nm/180 cm(-1) and 683 nm/80 cm(-1), respectively. Our analysis shows that pigments mostly contributing to the lowest-energy A' and B' states must be located on the side of the CP43' complex facing the PSI core, a finding that contradicts the model of Zhang et al. but is in agreement with the model suggested by Nield et al. (Biochemistry2003, 42, 3180-3188). We demonstrate that the A'-A' and B'-B' EET between different monomers is possible, though with a slower rate than intramonomer A'-B' and/or B'-A' energy transfer.


Subject(s)
Bacterial Proteins/chemistry , Cyanobacteria/metabolism , Light-Harvesting Protein Complexes/chemistry , Photosystem I Protein Complex/chemistry , Chlorophyll/chemistry , Energy Transfer , Spectrometry, Fluorescence , Temperature
15.
Biotechnol Prog ; 27(5): 1248-56, 2011.
Article in English | MEDLINE | ID: mdl-21751433

ABSTRACT

The goal of the study was to show that immobilized purple bacteria could photoproduce H(2) using dark fermentation effluent (FE) as substrate. Simple pretreatment of an inexpensive glass-fiber matrix accelerated the immobilization process. Photobioreactors (PhBR) containing immobilized Rhodobacter sphaeroides GL produced 0.128 L H(2) h(-1) L(-1) of PhBR volume (0.570 L h(-1) L(-1) of matrix) for up to 3 months when continuously fed artificial media with volatile fatty acids (VFAs) or FE from potato and starch fermentations. Hydrogen production was insensitive to NH(4)(+) up to 1 mM and saturated at 8 mM lactate or 1.5% potato FE (diluted in water and supplemented with critical micronutrients). The efficiency of VFA transformation to H(2) was 50-70% of theoretical. At nonlimiting substrate concentrations in artificial media or FE, acetate was utilized before butyrate. High volumetric rates of continuous H(2) photoproduction and stability of the process are advantages of using immobilized cultures. Use of H(2) photoproduction as a polishing step in the treatment of FEs from dark fermentations increased the total amount of H(2) produced from 0.9 to 4.7 mol mol(-1) glucose equivalent in the original potato homogenate.


Subject(s)
Fermentation , Hydrogen/metabolism , Light , Proteobacteria/metabolism , Solanum tuberosum/metabolism , Starch/metabolism , Rhodobacter sphaeroides/metabolism
16.
New Phytol ; 190(2): 279-88, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21563367

ABSTRACT

Many microbes in the soil environment experience micro-oxic or anoxic conditions for much of the late afternoon and night, which inhibit or prevent respiratory metabolism. To sustain the production of energy and maintain vital cellular processes during the night, organisms have developed numerous pathways for fermentative metabolism. This review discusses fermentation pathways identified for the soil-dwelling model alga Chlamydomonas reinhardtii, its ability to produce molecular hydrogen under anoxic conditions through the activity of hydrogenases, and the molecular flexibility associated with fermentative metabolism that has only recently been revealed through the analysis of specific mutant strains.


Subject(s)
Chlamydomonas reinhardtii/cytology , Chlamydomonas reinhardtii/metabolism , Hydrogen/metabolism , Anaerobiosis , Chlamydomonas reinhardtii/enzymology , Chlamydomonas reinhardtii/genetics , Fermentation , Hydrogenase/chemistry , Hydrogenase/metabolism , Mutation/genetics
17.
J Phys Chem B ; 115(12): 2737-47, 2011 Mar 31.
Article in English | MEDLINE | ID: mdl-21391534

ABSTRACT

The parameters of barrier distributions on the protein energy landscape in the excited electronic state of the pigment/protein system have been determined by means of spectral hole burning for the lowest-energy pigments of CP43 core antenna complex and CP29 minor antenna complex of spinach Photosystem II (PS II) as well as of trimeric and monomeric LHCII complexes transiently associated with the pea Photosystem I (PS I) pool. All of these complexes exhibit sixty to several hundred times lower spectral hole burning yields as compared with molecular glassy solids previously probed by means of the hole growth kinetics measurements. Therefore, the entities (groups of atoms), which participate in conformational changes in protein, appear to be significantly larger and heavier than those in molecular glasses. No evidence of a small (∼1 cm(-1)) spectral shift tier of the spectral diffusion dynamics has been observed. Therefore, our data most likely reflect the true barrier distributions of the intact protein and not those related to the interface or surrounding host. Possible applications of the barrier distributions as well as the assignments of low-energy states of CP29 and LHCII are discussed in light of the above results.


Subject(s)
Energy Transfer , Light-Harvesting Protein Complexes/metabolism , Absorption , Chlorophyll/metabolism , Kinetics , Light-Harvesting Protein Complexes/chemistry , Models, Molecular , Pisum sativum/enzymology , Photosystem II Protein Complex/metabolism , Protein Multimerization , Protein Structure, Quaternary , Spectrometry, Fluorescence , Spinacia oleracea/enzymology
18.
Methods Mol Biol ; 684: 17-27, 2011.
Article in English | MEDLINE | ID: mdl-20960118

ABSTRACT

Methods to isolate and purify 6- and 5-Chl D1/D2/Cyt b559 photosystem II (PSII) reaction center (RC) complexes from plants are presented, and the advantages and disadvantages of each procedure are discussed. One of the simpler 6-Chl procedures and a procedure for isolating 5-Chl complexes are described in detail. Furthermore, a rapid procedure that produces relatively large amounts of less pure 6-Chl material (i.e., more nonpigmented protein) is also described. Criteria to assess the purity of PSII RC preparations are presented, and problems associated with each of the isolation procedures are discussed.


Subject(s)
Chemical Fractionation/methods , Photosystem II Protein Complex/isolation & purification , Plants/enzymology , Cell Membrane/enzymology , Chlorophyll/metabolism , Electrophoresis, Polyacrylamide Gel , Octoxynol/chemistry , Peptide Fragments/analysis , Photosystem II Protein Complex/chemistry , Photosystem II Protein Complex/metabolism , Plant Cells , Spectrophotometry, Ultraviolet , Time Factors
19.
Methods Mol Biol ; 684: 105-12, 2011.
Article in English | MEDLINE | ID: mdl-20960125

ABSTRACT

A method to isolate and purify CP43 and CP47 pigment-protein complexes from Photosystem (PS) II of higher plants is presented. The method has been developed in spinach, but it may also be valid for other plant species, since there is high PSII core complex homology in all plants. Core complex, obtained from highly enriched PSII membrane fragments (the extrinsic proteins were previously removed by Tris treatment), is used as starting material. The core complex is first treated with the chaotropic agent, LiClO4, and the nonionic detergent, n-dodecyl ß-D-maltoside. After dialysis against buffer lacking detergent or chaotropic agent, the solubilized material is separated by anion-exchange chromatography using a TSK Toyopearl DEAE 650s column. CP43 complex does not bind to the column under these conditions and elutes along with free pigments and few other contaminants. When the eluate becomes colorless, the column is subjected to a 0-170-mM LiClO4 linear gradient. The main pigment elution band corresponds to the CP47 complex with some contaminants. To obtain pure preparations of CP43 and CP47 complexes, other chromatographic steps were developed. The CP43 material is passed through a S-Sepharose cation-exchange column at room temperature and then through a Q-Sepharose anion-exchange column. After dialysis, the solution is passed through a new Q-Sepharose anion-exchange column at a different pH. The bound material is eluted with a 10-70-mM MgSO4 linear gradient, and the fractions with a prominent peak at 670 nm and a clear shoulder at 683 nm are combined. This constitutes the pure CP43 complex. The CP47 material from the first column is dialyzed, loaded onto a new TSK Toyopearl DEAE 650s column, and eluted with a 0-175-mM LiClO4 linear gradient. The fractions with a peak at 674.8 nm are combined and constitute the pure CP47 complex.


Subject(s)
Chemical Fractionation/methods , Photosystem II Protein Complex/analysis , Photosystem II Protein Complex/isolation & purification , Spinacia oleracea/enzymology , Chromatography, Ion Exchange , Quality Control
20.
Neurosurgery ; 66(5): 883-92; discussion 892, 2010 May.
Article in English | MEDLINE | ID: mdl-20414977

ABSTRACT

OBJECTIVE: The anterior skull base, in front of the sphenoid sinus, can be approached using a variety of techniques including extended subfrontal, transfacial, and craniofacial approaches. These methods include risks of brain retraction, contusion, cerebrospinal fluid leak, meningitis, and cosmetic deformity. An alternate and more direct approach is the endonasal, transethmoidal, transcribriform, transfovea ethmoidalis approach. METHODS: An endoscopic, endonasal approach was used to treat a variety of conditions of the anterior skull base arising in front of the sphenoid sinus and between the orbits in a series of 44 patients. A prospective database was used to detail the corridor of approach, closure technique, use of intraoperative lumbar drainage, operative time, and postoperative complications. Extent of resection was determined by a radiologist using volumetric analysis. RESULTS: Pathology included meningo/encephaloceles (19), benign tumors (14), malignant tumors (9), and infectious lesions (2). Lumbar drains were placed intraoperatively in 20 patients. The CSF leak rate was 6.8% for the whole series and 9% for intradural cases. Leaks were effectively managed with lumbar drainage. Early reoperation for cerebrospinal fluid (CSF) leak occurred in 1 patient (2.2%). There were no intracranial infections. Greater than 98% resection was achieved in 12 of 14 benign and 5 of 9 malignant tumors. CONCLUSION: The endoscopic, endonasal, transethmoidal, transcribriform, transfovea ethmoidalis approach is versatile and suitable for managing a variety of pathological entities. This minimal access surgery is a feasible alternative to transcranial, transfacial, or combined craniofacial approaches to the anterior skull base and anterior cranial fossa in front of the sphenoid sinus. The risk of CSF leak and infection are reasonably low and decrease with experience. Longer follow-up and larger series of patients will be required to validate the long-term efficacy of this minimally invasive approach.


Subject(s)
Brain Diseases/surgery , Cranial Fossa, Anterior/surgery , Neuroendoscopy/methods , Neurosurgical Procedures/methods , Adolescent , Adult , Aged , Aged, 80 and over , Female , Humans , Male , Middle Aged , Minimally Invasive Surgical Procedures/adverse effects , Minimally Invasive Surgical Procedures/methods , Neuroendoscopy/adverse effects , Neurosurgical Procedures/adverse effects , Postoperative Complications/epidemiology , Postoperative Complications/etiology , Postoperative Complications/pathology , Skull Base/surgery , Young Adult
SELECTION OF CITATIONS
SEARCH DETAIL
...