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1.
Geophys Res Lett ; 47(19): e2020GL089252, 2020 Oct 16.
Article in English | MEDLINE | ID: mdl-33173248

ABSTRACT

Efforts to stem the spread of COVID-19 in China hinged on severe restrictions to human movement starting 23 January 2020 in Wuhan and subsequently to other provinces. Here, we quantify the ancillary impacts on air pollution and human health using inverse emissions estimates based on multiple satellite observations. We find that Chinese NOx emissions were reduced by 36% from early January to mid-February, with more than 80% of reductions occurring after their respective lockdown in most provinces. The reduced precursor emissions increased surface ozone by up to 16 ppb over northern China but decreased PM2.5 by up to 23 µg m-3 nationwide. Changes in human exposure are associated with about 2,100 more ozone-related and at least 60,000 fewer PM2.5-related morbidity incidences, primarily from asthma cases, thereby augmenting efforts to reduce hospital admissions and alleviate negative impacts from potential delayed treatments.

2.
J Geophys Res Atmos ; 124(1): 387-413, 2019 Jan 16.
Article in English | MEDLINE | ID: mdl-31007989

ABSTRACT

Global multiconstituent concentration and emission fields obtained from the assimilation of the satellite retrievals of ozone, CO, NO2, HNO3, and SO2 from the Ozone Monitoring Instrument (OMI), Global Ozone Monitoring Experiment 2, Measurements of Pollution in the Troposphere, Microwave Limb Sounder, and Atmospheric Infrared Sounder (AIRS)/OMI are used to understand the processes controlling air pollution during the Korea-United States Air Quality (KORUS-AQ) campaign. Estimated emissions in South Korea were 0.42 Tg N for NO x and 1.1 Tg CO for CO, which were 40% and 83% higher, respectively, than the a priori bottom-up inventories, and increased mean ozone concentration by up to 7.5 ± 1.6 ppbv. The observed boundary layer ozone exceeded 90 ppbv over Seoul under stagnant phases, whereas it was approximately 60 ppbv during dynamical conditions given equivalent emissions. Chemical reanalysis showed that mean ozone concentration was persistently higher over Seoul (75.10 ± 7.6 ppbv) than the broader KORUS-AQ domain (70.5 ± 9.2 ppbv) at 700 hPa. Large bias reductions (>75%) in the free tropospheric OH show that multiple-species assimilation is critical for balanced tropospheric chemistry analysis and emissions. The assimilation performance was dependent on the particular phase. While the evaluation of data assimilation fields shows an improved agreement with aircraft measurements in ozone (to less than 5 ppbv biases), CO, NO2, SO2, PAN, and OH profiles, lower tropospheric ozone analysis error was largest at stagnant conditions, whereas the model errors were mostly removed by data assimilation under dynamic weather conditions. Assimilation of new AIRS/OMI ozone profiles allowed for additional error reductions, especially under dynamic weather conditions. Our results show the important balance of dynamics and emissions both on pollution and the chemical assimilation system performance.

4.
Placenta ; 34(12): 1202-10, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24140079

ABSTRACT

OBJECTIVE: A common haplotype M2 consisting of minor SNP alleles located in the ANXA5 gene promoter region has been described as a risk factor for various obstetric complications such as recurrent pregnancy loss, pre-eclampsia and pregnancy-related thrombophilic disorder. However, the question of whether it is the maternal or fetal genotype that contributes to the onset of these disorders remains to be resolved. METHODS: We analyzed ANXA5 gene variants in the blood and placental tissues from pre-eclampsia patients and normotensive controls. ANXA5 expression was examined by qRT-PCR, Western blotting and immunostaining. Results were compared between M2 and non-M2 carriers. RESULTS: The M2 haplotype was found to be significantly frequent in placentas from pre-eclamptic patients relative to the controls (25.5% versus 10%, P = 0.044), In contrast, no significant differences were observed in maternal blood (13.0% versus 11.3%, P = 0.597). The placental expression of ANXA5 mRNA was found to be lower in M2 carriers. When examined by Western blot and immunostaining, the ANXA5 protein levels were found to be affected more by the placental than the maternal genotype. Histological examination of the placentas from the pre-eclamptic patients demonstrated that a placental M2 haplotype correlated more closely than maternal M2 with the severity of perivillous fibrin deposition. CONCLUSIONS: Although preliminary, these results suggest that hypomorphic M2 alleles in the in placental ANXA5 promoter, whether transmitted maternally or paternally, might be an essential determinant of an increased risk of pre-eclampsia via local thrombophilia at the feto-maternal interface.


Subject(s)
Annexin A5/genetics , Placenta/metabolism , Polymorphism, Genetic , Pre-Eclampsia/genetics , Promoter Regions, Genetic , Adult , Alleles , Annexin A5/metabolism , Case-Control Studies , Cesarean Section , Chorionic Villi/chemistry , Chorionic Villi/metabolism , Chorionic Villi/pathology , Down-Regulation , Female , Fetus/metabolism , Fibrin/metabolism , Genetic Association Studies , Heterozygote , Humans , Japan/epidemiology , Placenta/pathology , Pre-Eclampsia/metabolism , Pre-Eclampsia/pathology , Pre-Eclampsia/physiopathology , Pregnancy , Risk , Severity of Illness Index , Surface Properties
5.
BJOG ; 120(9): 1144-9, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23639121

ABSTRACT

OBJECTIVE: To determine the feasibility and safety of transverse fundal incision with manual placental removal in women with placenta praevia and possible placenta accreta. DESIGN: Case series. SETTING: Four level-three Japanese obstetric centres. POPULATION: Thirty-four women with prior caesarean section and placenta praevia that widely covers the anterior uterine wall, in whom placenta accreta cannot be ruled out. METHODS: A transverse fundal incision was performed at the time of caesarean section and manual placental removal was attempted under direct observation. MAIN OUTCOME MEASURE: Operative fluid loss. RESULTS: The total volume of fluid lost during our operative procedure compares favourably with the volume lost during our routine transverse lower-segment caesarean sections performed in patients without placenta praevia or accreta. The average fluid loss was 1370 g. No patients required transfer to intensive care, and there were no cases of fetal anaemia. CONCLUSIONS: This procedure has the potential to reduce the heavy bleeding that arises from caesarean deliveries in women with placenta praevia and placenta accreta.


Subject(s)
Cesarean Section , Placenta Accreta/surgery , Placenta Previa/surgery , Postoperative Complications/surgery , Uterine Hemorrhage/prevention & control , Uterus/surgery , Case-Control Studies , Cesarean Section/statistics & numerical data , Feasibility Studies , Female , Guidelines as Topic , Humans , Japan/epidemiology , Placenta Accreta/diagnosis , Placenta Previa/diagnosis , Postoperative Complications/diagnosis , Pregnancy , Uterus/pathology
6.
Placenta ; 33(11): 919-26, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22964307

ABSTRACT

High temperature requirement A (HtrA) family proteins are serine proteases that may serve in the quality control of misfolded or mislocalized proteins. Recently, possible involvements of HtrA1 in the normal development of the placenta and in the pathogenesis of pre-eclampsia were reported. In this study, we characterized HtrA4, a previously uncharacterized HtrA protein family member, in pre-eclampsia. Elevated expression levels of placental HtrA4 in pre-eclampsia patients were observed by qRT-PCR. Western blotting also showed an increased production of HtrA4 at the protein level in pre-eclamptic placentas. In normal chorionic villi, HtrA4 protein was more abundant in the cytoplasm of cytotrophoblasts than in syncytiotrophoblasts. In contrast, the amount of HtrA4 protein in syncytiotrophoblasts was dramatically increased in pre-eclamptic placentas. Circulating HtrA4 was detected at higher levels in sera from women with pre-eclampsia than from those with normotensive pregnancies. Serum HtrA4 levels were higher in patients with early onset and inversely correlated with the weights of the newborn and placenta. Furthermore, serum levels correlated with serum PAPP-A and PAPP-A2 levels, indicating a functional role for HtrA4 in the common pathway. These data suggest that increased HtrA4 may be involved in the onset of pre-eclampsia, and elevated levels in sera imply a potential application as a biomarker for this disorder.


Subject(s)
Enzyme Induction , Placenta/enzymology , Pre-Eclampsia/metabolism , Serine Proteases/metabolism , Adult , Biomarkers/blood , Birth Weight , Chorionic Villi/enzymology , Chorionic Villi/metabolism , Cytoplasm/enzymology , Cytoplasm/metabolism , Female , High-Temperature Requirement A Serine Peptidase 1 , Humans , Organ Specificity , Placenta/metabolism , Placentation , Pre-Eclampsia/blood , Pre-Eclampsia/physiopathology , Pregnancy , Pregnancy-Associated Plasma Protein-A/analysis , Protein Isoforms/blood , RNA, Messenger/metabolism , Serine Endopeptidases/blood , Serine Endopeptidases/genetics , Serine Endopeptidases/metabolism , Serine Proteases/blood , Serine Proteases/genetics , Severity of Illness Index , Trophoblasts/enzymology , Trophoblasts/metabolism
7.
Article in English | MEDLINE | ID: mdl-21502411

ABSTRACT

There exists a hierarchy by which transcription factors can engage their target sites in chromatin, in that a subset of factors can bind transcriptionally silent, nucleosomal DNA, whereas most factors cannot, and this hierarchy is reflected, at least in part, in the developmental function of the factors. For example, transcription factors possessing the Forkhead box (Fox) DNA-binding domain contain an overall fold resembling that of linker histone and thus are structured to bind DNA, site specifically, in a nucleosomal context. Where tested, Fox factors bind early in the developmental or physiological activation of target genes, thereby enabling the binding of other factors that cannot engage chromatin on their own. To investigate the basis for early chromatin binding, we have used fluorescence recovery after photobleaching (FRAP) to analyze the mobility, in the live cell nucleus, of FoxA factors in comparison to linker histone and other transcription factors. We have further analyzed the factors for their ability to bind to chromatin in mitosis and thereby serve as epigenetic marks. The results indicate that the "pioneer" features of FoxA factors involve various chromatin-binding parameters seen in linker histones and that distinguish the factors with respect to their regulatory and mechanistic functions.


Subject(s)
Chromosomes/metabolism , Hepatocyte Nuclear Factor 3-alpha/metabolism , Histones/metabolism , Mitosis , Cell Line, Tumor , Green Fluorescent Proteins/metabolism , Hepatocyte Nuclear Factor 3-alpha/chemistry , Humans , Nucleosomes/metabolism , Protein Binding , Protein Structure, Tertiary , Protein Transport , Recombinant Fusion Proteins/metabolism
8.
Article in English | MEDLINE | ID: mdl-19028990

ABSTRACT

The endoderm is a multipotent progenitor cell population in the embryo that gives rise to the liver, pancreas, and other cell types and provides paradigms for understanding cell-type specification. Studies of isolated embryo tissue cells and genetic approaches in vivo have defined fibroblast growth factor/mitogen-activated protein kinase (FGF/MAPK) and bone morphogenetic protein (BMP) signaling pathways that induce liver and pancreatic fates in the endoderm. In undifferentiated endoderm cells, the FoxA and GATA transcription factors are among the first to engage silent genes, helping to endow competence for cell-type specification. FoxA proteins can bind their target sites in highly compacted chromatin and open up the local region for other factors to bind; hence, they have been termed "pioneer factors." We recently found that FoxA proteins remain bound to chromatin in mitosis, as an epigenetic mark. In embryonic stem cells, which lack FoxA, FoxA target sites can be occupied by FoxD3, which in turn helps to maintain a local demethylation of chromatin. By these means, a cascade of Fox factors helps to endow progenitor cells with the competence to activate genes in response to tissue-inductive signals. Understanding such epigenetic mechanisms for transcriptional competence coupled with knowledge of the relevant signals for cell-type specification should greatly facilitate efforts to predictably differentiate stem cells to liver and pancreatic fates.


Subject(s)
Embryonic Stem Cells/cytology , Liver/embryology , Pancreas/embryology , Animals , Chromatin/genetics , Chromatin/metabolism , Embryonic Stem Cells/metabolism , Endoderm/cytology , Endoderm/embryology , Endoderm/metabolism , Enhancer Elements, Genetic , Epigenesis, Genetic , Female , Forkhead Transcription Factors/genetics , Forkhead Transcription Factors/metabolism , Liver/cytology , Liver/metabolism , Mice , Mitosis , Models, Biological , Multipotent Stem Cells/cytology , Multipotent Stem Cells/metabolism , Pancreas/cytology , Pancreas/metabolism , Pregnancy , Signal Transduction
9.
Clin Exp Dermatol ; 31(2): 278-80, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16487109

ABSTRACT

Granulocyte-macrophage colony-stimulating factor (GM-CSF) is thought to play an important role in the pathogenesis of atopic dermatitis. To examine whether GM-CSF single nucleotide polymorphisms (SNPs) are associated with susceptibility to atopic dermatitis, we investigated the genotype and allele frequencies of the SNPs 3606T/C and 3928C/T of the GM-CSF gene in 181 Japanese patients with atopic dermatitis and 100 controls, using a PCR restriction fragment length polymorphism method. A strong linkage disequilibrium existed between the polymorphisms 3606 and 3928, suggesting two common GM-CSF haplotypes, 3606*T-3928*C and 3606*C-3928*T. However, there was no significant difference in genotype or allele frequencies between patients with atopic dermatitis and controls for either of the two polymorphisms, thus GM-CSF SNPs do not appear to be associated with susceptibility to atopic dermatitis in Japanese patients. A large-scale study is necessary to confirm these findings.


Subject(s)
Dermatitis, Atopic/genetics , Granulocyte-Macrophage Colony-Stimulating Factor/genetics , Polymorphism, Genetic/genetics , Polymorphism, Single Nucleotide , Adolescent , Adult , Case-Control Studies , Child , Dermatitis, Atopic/ethnology , Female , Humans , Japan/ethnology , Male , Middle Aged
10.
Arch Oral Biol ; 48(5): 389-95, 2003 May.
Article in English | MEDLINE | ID: mdl-12711383

ABSTRACT

The effect of daily use of three different dentifrices on glucose retention after glucose mouth rinsing was tested in this study regarding xylitol and fluoride. Six experimental groups used three different dentifrices produced by two different companies: xylitol- and fluoride-containing dentifrice (XF), non-xylitol- and fluoride-containing dentifrice (F), and non-xylitol- and non-fluoride-containing dentifrice (NonX-NonF). Subjects were divided at random and rinsed their mouths for 15s with 20ml of 0.5M glucose solution. Glucose and lactate retention were determined by collecting samples of saliva from the approximal areas of the maxillary and mandibular anterior teeth and using the enzyme membrane test. Samples were collected 0, 1 and 2 months after the start of regular dentifrice use. There were significant differences in glucose retention in relation to the dentifrice used, month of sampling, site of sampling, and time since start of rinsing. Their contribution ratios were 2.0, 4.4, 11.7 and 7.4%, respectively (P<0.01). There were significant differences observed between the XF and NonX-NonF groups, with the XF group presenting lower glucose retention than the NonX-NonF group. The XF group presented lower glucose retention than the F group. The F group showed lower glucose retention than the NonX-NonF group. There were significant differences in lactate retention in relation to the month and site of sampling, and their contribution ratios were 3.3 and 2.8%, respectively (P<0.01). There were, however, no significant differences in glucose and lactate retention in relation to the dentifrice manufacturer. It was concluded that the XF dentifrice was the most effective, and the F dentifrice was more effective in reducing glucose retention than the NonX-NonF dentifrice.


Subject(s)
Dentifrices , Fluorides/administration & dosage , Glucose/pharmacokinetics , Saliva/chemistry , Sweetening Agents/administration & dosage , Xylitol/administration & dosage , Adult , Analysis of Variance , Dental Plaque/metabolism , Female , Glucose/analysis , Humans , Lactic Acid/analysis , Time Factors
11.
Allergy ; 57(2): 173-7, 2002 Feb.
Article in English | MEDLINE | ID: mdl-11929424

ABSTRACT

BACKGROUND: Cytokines liberated by TH2 cells play crucial roles in the pathogenesis of bronchial asthma. Recent studies have demonstrated that CC chemokine receptor (CCR)4 is preferentially expressed by TH2 cells. These facts suggest possible involvement of two CCR4-specific ligands i.e., thymus and activation-regulated chemokine (TARC) and macrophage-derived chemokine (MDC), in the pathogenesis of bronchial asthma via recruitment of TH2 cells to inflammatory sites. We investigated the levels of TARC and MDC in the serum and induced sputum of asthmatics. METHODS: The levels of TARC in the serum (46 asthmatics and 26 healthy subjects) and induced sputum (30 asthmatics and 6 healthy subjects) were measured using a highly sensitive ELISA system. The levels of eotaxin and MDC were also measured by ELISA. RESULTS: TARC, but not MDC, was significantly increased in asthmatic sera (P<0.001). Although MDC was undetectable in the sputum of most cases by our assay system, sputum TARC was significantly increased (P=0.027). CONCLUSIONS: The elevated TARC levels in asthmatics might be involved in the pathophysiology of asthma.


Subject(s)
Asthma/metabolism , Chemokines, CC/blood , Ribonucleases , Sputum/chemistry , Sputum/metabolism , Th2 Cells/metabolism , Adult , Aged , Blood Proteins/metabolism , Chemokine CCL11 , Chemokine CCL17 , Chemokine CCL22 , Eosinophil Granule Proteins , Female , Humans , Immunoglobulin E/blood , Male , Middle Aged , Statistics as Topic
12.
Gene ; 273(2): 181-9, 2001 Aug 08.
Article in English | MEDLINE | ID: mdl-11595164

ABSTRACT

Loss of heterozygosity for a locus on human chromosome 11q22-23 is observed at high frequency in non-small cell lung carcinoma (NSCLC). Introduction of a 1.1 Mb fragmented yeast artificial chromosome (YAC) mapping to this region completely suppresses the tumorigenic properties of a human NSCLC cell line, A549. Smaller fragmented YACs give partial but not complete suppression. To further localize the gene(s) responsible for this partial suppression, a bacterial artificial chromosome (BAC) and P1-based artificial chromosome (PAC) contig was constructed, completely spanning the candidate region. End sequence generated in the construction of the BAC/PAC contig identified a previously unmapped EST and served to order genomic sequence contigs from the publicly available Celera Genomics (CG) and Human Genome Project (HGP) efforts. Comparison showed that CG provided larger contigs, while HGP provided more coverage. Neither CG nor HGP provided complete sequence coverage, alone or in combination. The sequence was used to map 110 ESTs and to predict new genes, including two GenScan gene predictions that overlapped ESTs and were shown to be differentially expressed in tumorigenic and suppressed A549 cell lines.


Subject(s)
Chromosomes, Human, Pair 11/genetics , Genes, Tumor Suppressor/genetics , Genetic Predisposition to Disease/genetics , Immunoglobulins , Membrane Proteins , Proteins/genetics , Cell Adhesion Molecule-1 , Cell Adhesion Molecules , Contig Mapping , DNA, Neoplasm/chemistry , DNA, Neoplasm/genetics , Humans , Molecular Sequence Data , Physical Chromosome Mapping , Sequence Analysis, DNA , Tumor Cells, Cultured , Tumor Suppressor Proteins
13.
J Urol ; 166(4): 1280-5, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11547058

ABSTRACT

PURPOSE: Patients with superficial bladder cancer can be treated with transurethral resection. However, 50% to 70% of them have intravesical recurrence after transurethral resection and muscle invasive disease develops in 10% to 20%, which is eventually indicated for radical cystectomy. Therefore, reliable predictors of intravesical recurrence are required for management of superficial bladder cancer. We investigated whether detection of the loss of heterozygosity in urine samples would be available as a sensitive diagnostic modality for recurrence of bladder cancer. MATERIALS AND METHODS: Urine samples, cancer tissue and peripheral blood lymphocytes were obtained from 37 patients with newly diagnosed bladder cancer, and analyzed for the loss of heterozygosity on chromosomes 9 and 17p by single strand DNA conformation polymorphism analysis. RESULTS: Chromosomal loss was detected on 24 (65%) cancer tissues and 26 (70%) urine samples. The loss of heterozygosity on chromosome 17p was detected in 19 (51%) urine samples, mostly in cancers with higher grades and/or stages. During postoperative followup of 24 patients with superficial bladder cancer who had undergone transurethral resection, intravesical recurrence did not develop in 9 of 10 without chromosomal aberrations in urine samples. In contrast, intravesical recurrence developed in 11 of 14 patients who had a loss of heterozygosity in urine samples. This loss showed a significant correlation with the intravesical disease-free period (p = 0.004). Multivariate analysis revealed that the loss of heterozygosity in urine samples was a significant predictor of intravesical recurrence. CONCLUSIONS: Detection of the loss of heterozygosity in urine samples is available as a sensitive marker for predicting intravesical recurrence of superficial bladder cancer.


Subject(s)
Neoplasm Recurrence, Local/genetics , Neoplasm Recurrence, Local/urine , Urinary Bladder Neoplasms/genetics , Urinary Bladder Neoplasms/urine , Adult , Aged , Aged, 80 and over , Female , Follow-Up Studies , Humans , Loss of Heterozygosity , Male , Middle Aged , Neoplasm Recurrence, Local/diagnosis , Urinary Bladder Neoplasms/diagnosis
14.
Oncogene ; 20(38): 5401-7, 2001 Aug 30.
Article in English | MEDLINE | ID: mdl-11536053

ABSTRACT

We have recently identified the TSLC1 gene as a novel tumor suppressor in human non-small cell lung cancers. TSLC1 encodes a membrane glycoprotein with an extracellular domain homologous to those of immunoglobulin superfamily proteins. Truncation of TSLC1 in the cytoplasmic domain in a primary human tumor suggests that this domain is important for tumor suppressor activity. Here, we report the isolation of two TSLC1-like genes, TSLL1 and TSLL2, based on their structural homology with the sequences corresponding to the cytoplasmic domain of TSLC1. Significant similarity was also observed in the extracellular domain as well as in the overall gene structure, indicating that these three genes form a unique subfamily (the TSLC1-gene family) in the immunoglobulin superfamily genes. In contrast to the ubiquitous expression of TSLC1, TSLL1 is expressed exclusively in adult and fetal human brain, while TSLL2 is expressed in several specific tissues including prostate, brain, kidney and some other organs. Expression of TSLL1 and TSLL2 was lost or markedly reduced in many human glioma cell lines or some prostate cancer cell lines, suggesting that loss of expression of these genes might be involved in some human cancers.


Subject(s)
Immunoglobulins , Membrane Proteins , Protein Biosynthesis , Proteins/genetics , Adult , Amino Acid Sequence , Base Sequence , Blotting, Northern , Brain/embryology , Carcinoma, Non-Small-Cell Lung/genetics , Cell Adhesion Molecule-1 , Cell Adhesion Molecules , Cell Membrane/metabolism , Chromosome Mapping , Cloning, Molecular , DNA, Complementary/metabolism , Exons , Humans , In Situ Hybridization, Fluorescence , Introns , Lung Neoplasms/genetics , Models, Genetic , Molecular Sequence Data , Multigene Family , Protein Structure, Tertiary , Proteins/chemistry , Sequence Homology, Amino Acid , Tissue Distribution , Tumor Cells, Cultured , Tumor Suppressor Proteins
15.
No To Shinkei ; 53(6): 567-70, 2001 Jun.
Article in Japanese | MEDLINE | ID: mdl-11436342

ABSTRACT

A 20-year-old female experienced temporary unintentional mirror writing associated with low perfusion of the bilateral anterior cerebral arteries. When she was 17 years old, she had developed multiple idiopathic intracerebral hemorrhages and right hemiparesis. At the age of 20, she had a generalized convulsion for which she was transferred to our department. Computed tomography (CT) and magnetic resonance images of the brain were obtained, but no fresh abnormal lesion could be detected. The following day, after she had recovered from postictal symptoms, she wrote mirror image words, and her mirror writing then gradually improved within one week. Single photon emission CT showed low perfusion of both anterior cerebral arteries. We concluded that bilateral vascular insufficiency to the supplementary motor areas and corpus callosum caused mirror writing in this case.


Subject(s)
Anterior Cerebral Artery , Cerebral Arterial Diseases/physiopathology , Cerebrovascular Circulation , Dominance, Cerebral , Adult , Brain/diagnostic imaging , Brain/pathology , Cerebral Arterial Diseases/diagnosis , Female , Humans , Magnetic Resonance Imaging , Tomography, Emission-Computed, Single-Photon
16.
Electrophoresis ; 22(10): 1946-56, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11465493

ABSTRACT

We have applied a methylation-sensitive restriction endonuclease, NotI, to the existing amplified fragment length polymorphism (AFLP) method and developed NotI-MseI methylation-sensitive-AFLP (MS-AFLP). NotI-MseI MS-AFLP allows the analysis of DNA methylation alterations at the NotI sites scattered over the genome. Hypermethylation and hypomethylation are visualized by the decrease and increase in the band intensity of DNA fingerprints. Identification of consistent changes can be facilitated through parallel electrophoresis of multiple samples. DNA fragments exhibiting alterations can be cloned from fingerprint bands by amplification of gel-eluted DNA with the same pair of primers used for radioactive fingerprint presentation. Fluorescent NotI-MseI MS-AFLP offers a safer method of studying the alterations in DNA methylation, and may be applied to the hybridization of DNA microarrays in the future. Using NotI-MseI MS-AFLP, we observed frequent hypomethylation of a satellite DNA repeat sequence in a majority of breast tumors.


Subject(s)
DNA Methylation , DNA, Neoplasm/chemistry , DNA, Neoplasm/genetics , Neoplasms/chemistry , Neoplasms/genetics , Polymorphism, Restriction Fragment Length , Blotting, Southern/methods , Breast Neoplasms/chemistry , Breast Neoplasms/genetics , DNA Fingerprinting/methods , DNA, Satellite/chemistry , DNA, Satellite/genetics , Deoxyribonucleases, Type II Site-Specific , Female , Fluorescent Dyes , Humans , Lung Neoplasms/chemistry , Lung Neoplasms/genetics , Male , Prostatic Neoplasms/chemistry , Prostatic Neoplasms/genetics , Reproducibility of Results
17.
Brain Res ; 905(1-2): 152-60, 2001 Jun 29.
Article in English | MEDLINE | ID: mdl-11423090

ABSTRACT

Post-traumatic invasion of macrophages into the cochlear nerve of the rat and measurement of how their invasion was modified by the administration of methylprednisolone were investigated for the first time by using a reproducible and quantifiable experimental model of cochlear nerve injury. Two weeks after precise cochlear nerve compression, a massive invasion of ED1 immunostained macrophages was observed at the compressed portion of the cochlear nerve, and this invasion of macrophages was markedly reduced in the rats to which methylprednisolone had been administered during the pre- and post-compression period. Concomitantly, the residual number of spiral ganglion cells was found to be greater in the compression+methylprednisolone group than in the control compression group. The tissue loss observed in the lesion epicenter was also significantly less in the compression+methylprednisolone group than in the control compression group. The results of our present study demonstrated the effectiveness of methylprednisolone treatment to ameliorate trauma induced cochlear nerve degeneration in the acute phase. However, these results may reflect the sum effects of methylprednisolone on macrophages, including both its beneficial effect by inhibiting the negative aspects of macrophages through attenuating macrophage recruitment to the lesion site, and at the same time an undesirable effect by sacrificing the positive aspects of macrophage function. Moreover, one reservation should be added that the protective effects of steroid to injured cochlear nerve may have operated via a pathway not related to macrophage function. Besides macrophages, various cells and factors participate in the process of CNS injury, and their effects may potentially work either positively or negatively with respect to CNS protection and regeneration at each particular time during the on-going process of CNS injury. Therefore, future investigation in CNS injury should be directed toward understanding such complex mechanisms involved in this process.


Subject(s)
Anti-Inflammatory Agents/pharmacology , Cochlear Nerve/drug effects , Cochlear Nerve/injuries , Macrophage Activation/drug effects , Macrophages/drug effects , Methylprednisolone/pharmacology , Vestibulocochlear Nerve Diseases/drug therapy , Action Potentials/drug effects , Action Potentials/physiology , Animals , Cochlear Nerve/pathology , Disease Models, Animal , Macrophage Activation/physiology , Macrophages/metabolism , Macrophages/pathology , Male , Nerve Crush , Neural Conduction/drug effects , Neural Conduction/physiology , Rats , Rats, Sprague-Dawley , Retrograde Degeneration/drug therapy , Retrograde Degeneration/pathology , Retrograde Degeneration/physiopathology , Spiral Ganglion/drug effects , Spiral Ganglion/injuries , Spiral Ganglion/pathology , Vestibulocochlear Nerve Diseases/pathology , Vestibulocochlear Nerve Diseases/physiopathology
18.
Mutat Res ; 477(1-2): 173-82, 2001 Jun 02.
Article in English | MEDLINE | ID: mdl-11376698

ABSTRACT

A rat line carrying three copies of the human c-Ha-ras proto-oncogenes, including its own promoter region, was established and designated as Hras128. Expression of the transgene was detected in all organs by Northern blot analysis. To examine its influence on susceptibility to mammary carcinogenesis, female rats were treated with N-methyl-N-nitrosourea (MNU) or 7,12-dimethylbenz[a]anthracene (DMBA) at 50 days of age. With MNU, all the transgenic rats rapidly developed multiple mammary carcinomas within as short as 8 weeks (14.1 tumors/rat), in contrast to 0.46 tumors/rat in non-transgenic rats. PCR-RFLP analysis and direct sequencing for the transgene indicated that the large majority of carcinomas (38/44, 86.4%) contained cells with mutations at codon 12 in exon 1. However, comparison of the signal densities of the mutated band to dilution scale bands revealed that the cells with the mutated transgene were not in the majority. By PCR-SSCP analysis for codons 12 and 61 of the rat endogenous c-Ha-ras gene, no mutations were detected. Similarly, with DMBA, almost all (13/14, 92.9%) the transgenic rats developed multiple mammary carcinomas (9.39 tumors/rat) within 16 weeks, and 4 out of 12 (33.3%) non-transgenic rats had only small tumors (0.83 tumors/rat). A lower incidence of mutation of the transgene was found in codon 12 (5/25, 25%) than in MNU-induced tumors, but mutations were detected in codon 61 (7/20, 35%). No mutations were detected in the rat endogenous gene. No mutation was found in the rat endogenous c-Ha-ras gene in non-transgenic rats. As observed in both the MNU- and DMBA-induced tumor cases, the population of cells with the mutated transgene were in the minority. The results thus indicate that rats carrying the transduced human c-Ha-ras proto-oncogene are highly susceptible to MNU- and DMBA-induced mammary carcinogenesis and that this is not primarily due to mutations of the transgene or endogenous c-Ha-ras gene. Furthermore, irrespective of the mechanism of enhanced susceptibility, the Hras128 transgenic rats can be utilized for the screening of mammary carcinogens.


Subject(s)
Carcinogens/toxicity , Genes, ras , Mammary Neoplasms, Experimental/genetics , 9,10-Dimethyl-1,2-benzanthracene/toxicity , Animals , Animals, Genetically Modified , Cell Transformation, Neoplastic , Female , Genetic Predisposition to Disease , Humans , Mammary Neoplasms, Experimental/chemically induced , Methylnitrosourea/toxicity , Polymorphism, Single-Stranded Conformational , Proto-Oncogene Mas , Rats
19.
J Hum Genet ; 46(3): 150-1, 2001.
Article in English | MEDLINE | ID: mdl-11310583

ABSTRACT

Four single-nucleotide polymorphisms have been found in the human BUB1 gene, which encodes a kinase involved in the mitotic spindle checkpoint. A cytosine-to-thymine change in exon 10, corresponding to codon 375 (c.1124C>T), causes an amino acid substitution of serine to phenylalanine. A guanine/cytosine polymorphism in exon 4 (c.279G>C) and a thymine/cytosine polymorphism in exon 12 (c.1293T>C) do not cause amino acid substitution. The other polymorphism, of thymine/cytosine (IVS9-8T>C), is found at 8bp upstream of exon 10. As mutations of the hBUB1 gene were reported in a subset of human cancers, these polymorphisms could provide useful tools for the genetic study of susceptibility to various human cancers.


Subject(s)
Polymorphism, Single Nucleotide , Protein Kinases/genetics , Alleles , Amino Acid Substitution , Base Sequence , Chromosomes, Human, Pair 2/genetics , DNA Primers/genetics , Gene Frequency , Humans , Neoplasms/enzymology , Neoplasms/genetics , Polymerase Chain Reaction , Protein Serine-Threonine Kinases
20.
Oncogene ; 20(3): 314-9, 2001 Jan 18.
Article in English | MEDLINE | ID: mdl-11313960

ABSTRACT

Loss of heterozygosity on chromosome 10p was observed frequently in human prostate cancers. Studies have demonstrated that the introduction of the short arm of human chromosome 10 into a human prostate cancer cell line, PPC-1, by microcell-mediated chromosome transfer (MMCT), suppressed the malignant phenotype, suggesting the presence of a prostate tumor suppressor gene(s) within a region of 17 cM at distal 10p. To narrow down the candidate region harboring the tumor suppressor gene, a series of 10p fragments were transferred into PPC-1 cells by MMCT using a panel of hamster-human hybrid cells containing various portions of 10p. Four of the six hybrid cells obtained showed decreased tumorigenicity when injected subcutaneously into athymic nude mice. Tumors developed only at six of 40 injection sites for these four hybrid cells. In contrast, the other two hybrid cells, as well as parental PPC-1 cells, were judged to be fully tumorigenic because tumors appeared at a total 26 of 32 sites for the two hybrid cells and 15 of 16 sites for PPC-1. Allelotyping of 10p combined with fluorescence in situ hybridization in these hybrid cells suggested that a prostate tumor suppressor gene was located within a fragment of approximately 1.2 Mb flanked by D10S1172 and D10S226 on 10p15.1.


Subject(s)
Chromosomes, Human, Pair 10 , Genes, Tumor Suppressor , Prostatic Neoplasms/genetics , Adenocarcinoma/genetics , Adenocarcinoma/pathology , Animals , Carcinogenicity Tests , Cricetinae , Gene Transfer Techniques , Genetic Markers , Humans , Hybrid Cells , Male , Mice , Mice, Inbred BALB C , Mice, Nude , Prostatic Neoplasms/pathology , Sequence Tagged Sites , Tumor Cells, Cultured
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