An eco-systems biology approach for modeling tritrophic networks reveals the influence of dietary amino acids on symbiont dynamics of Bemisia tabaci.

Metabolic conversions allow organisms to produce essential metabolites from the available nutrients in an environment, frequently requiring metabolic exchanges among co-inhabiting organisms. Here, we applied genomic-based simulations for exploring tri-trophic interactions among the sap-feeding insect whitefly (Bemisia tabaci), its host-plants, and symbiotic bacteria. The simplicity of this ecosystem allows capturing the interacting organisms (based on genomic data) and the environmental content (based on metabolomics data). Simulations explored the metabolic capacities of insect-symbiont combinations under environments representing natural phloem. Predictions were correlated with experimental data on the dynamics of symbionts under different diets. Simulation outcomes depict a puzzle of three-layer origins (plant-insect-symbionts) for the source of essential metabolites across habitats and stratify interactions enabling the whitefly to feed on diverse hosts. In parallel to simulations, natural and artificial feeding experiments provide supporting evidence for an environment-based effect on symbiont dynamics. Based on simulations, a decrease in the relative abundance of a symbiont can be associated with a loss of fitness advantage due to an environmental excess in amino-acids whose production in a deprived environment used to depend on the symbiont. The study demonstrates that genomic-based predictions can bridge environment and community dynamics and guide the design of symbiont manipulation strategies.

Impact of hydrogeochemical processes and its evolution in controlling groundwater chemistry along the east coast of Tamil Nadu and Puducherry, India.

The present study area falls beside the coastal zone of Tamil Nadu, and Puducherry is characterized by varied geological formations that mostly contain groundwater resources that are primarily utilized for domestic, agricultural, industrial, and other utilities. The study aims to differentiate various hydrogeochemical processes responsible for disparities in water chemistry. Groundwater samples were collected from 66 sites during the two major seasons: pre-monsoon and post-monsoon. The analytical data were separated into terrain vice and utilized for preparing graphical plots as well as mathematical calculations to obtain the existing relationship among chemical constituents and water quality. The Ca-HCO3, Na-Cl, Ca-Na-HCO3, mixed Ca-Mg-Cl, Ca-Cl, and Na-HCO3 are the main hydrochemical facies observed from the groundwater samples. The ionic relationship among the samples indicates the control of direct and reverse ion exchange in the concentration of Ca2+, Mg2+, Na+, and K+ in groundwater. Moreover, silicate weathering contributes more in comparison with carbonate and evaporite dissolution. Gibbs plots reveal that water-rock interaction and evaporation processes are the main mechanisms controlling the water chemistry. The saturation index of different mineral phases indicates groundwater to be oversaturated with silicate mineral phases irrespective of the terrain. Statistical methods like correlation and principal component analysis were also performed to differentiate the specific association and possible source of the dissolved constituent in the groundwater. The study concludes the influence of multiple processes such as silicate weathering, direct and reverse ion exchange, secondary dissolution, saline water intrusion, and anthropogenic sources as the main reasons responsible for variation in groundwater chemistry.

Hydrogeochemical investigations to assess groundwater and saline water interaction in coastal aquifers of the southeast coast, Tamil Nadu, India.

Groundwater and saline water interaction is the most common processes in the coastal aquifers that alters the quality of aquifer waters. The quaternary alluvium aquifer system is a significant water resource of southeast coastal Tamil Nadu that provides water supplies for industrial, agriculture, and domestic utilities. Hydrogeochemical investigations were attempted to analyze groundwater-saline water interactions for which a total of three hundred and sixty samples representing surface water, pore water, and groundwater samples collected from three significant locations (location A, B, and C) and analyzed for major ion concentrations. Piper plot infers surface and pore water samples representing saline water type (Na-Cl) in all the three locations due to tidal variation and sand dominant surface layer. Groundwater samples represent (Ca-HCO3) type at location A due to fresh groundwater discharge, mixed or subterranean estuary (Ca, Mg-Cl, HCO3) at location B due to conversion of freshwater (Ca-HCO3) at low tide to saline water (Na-Cl) at high tide, and saline (Na-Cl) water at location C due to proximity and influence of tides. The Cl-/HCO3- vs. Cl- plot represents two water types, such as fresh groundwater (0.5) and strongly affected by seawater intrusion (6.6). The plot (Ca2++Mg2+)/(K++Na+) vs. log Cl- represents freshwater in location A, mixing in location B, and saline water in location C. Groundwater samples observed to be fresh in location A (20.0 km away from the coast), recirculated in location B (9.0 km away from the coast), and saline in location C (0.5 km away from the coast).

Assessment of the Nutritional and Medicinal Potential of Tubers from Hairy Stork's-Bill (Erodium crassifolium L 'Hér), a Wild Plant Species Inhabiting Arid Southeast Mediterranean Regions.

Emerging needs for diversifying human diet and to explore novel therapeutic procedures have led to increasing attempts to retrieve traditional nourishments and recruit beneficial wild plant species. Species of the genus Erodium (Geraniaceae) harbor medicinal indications and substances known from folklore and scientific research. Hairy stork's bill (Erodium crassifolium L'Hér), is a small hemicryptophyte that inhabits arid southeast Mediterranean regions. E. crassifolium is among the very few Geraniaceae species known to produce tubers. Traditional knowledge holds that the tubers are edible and used by Bedouin tribes. However, no scientific information was found regarding nutrition or medicinal properties of these tubers. The objectives of our project are to unravel potential nutritional and medicinal benefits of the tubers, conduct initial steps towards domestication and develop agricultural practices enhancing E. crassifolium tuber yield and quality. Tubers show high water content (90%), low caloric value (23 Kcal 100-1 g) and considerable contents of minerals and vitamins. In addition, the tubers contain significant amounts of catechins and epigallocatechin, polyphenolic compounds known for their antioxidative, anti-inflammatory and antiproliferative activities. Furthermore, in vitro experiments demonstrated significant anti-inflammatory effects on human cell cultures. E. crassifolium is highly responsive to environmental changes; fertigation (700 mm) increased tuber yield by 10-fold, compared to simulated wild conditions (50-200 mm). These results indicate a significant potential of E. crassifolium becoming a valuable crop species. Therefore, there is a need for continued efforts in domestication, including ecotype selection, breeding, development of suitable agricultural practices and further exploration of its medicinal benefits.

NetMet: A Network-Based Tool for Predicting Metabolic Capacities of Microbial Species and their Interactions.

Metabolic conversions allow organisms to produce a set of essential metabolites from the available nutrients in an environment, frequently requiring metabolic exchanges among co-inhabiting organisms. Genomic-based metabolic simulations are being increasingly applied for exploring metabolic capacities, considering different environments and different combinations of microorganisms. NetMet is a web-based tool and a software package for predicting the metabolic performances of microorganisms and their corresponding combinations in user-defined environments. The algorithm takes, as input, lists of (i) species-specific enzymatic reactions (EC numbers), and (ii) relevant metabolic environments. The algorithm generates, as output, lists of (i) compounds that individual species can produce in each given environment, and (ii) compounds that are predicted to be produced through complementary interactions. The tool is demonstrated in two case studies. First, we compared the metabolic capacities of different haplotypes of the obligatory fruit and vegetable pathogen Candidatus Liberibacter solanacearum to those of their culturable taxonomic relative Liberibacter crescens. Second, we demonstrated the potential production of complementary metabolites by pairwise combinations of co-occurring endosymbionts of the plant phloem-feeding whitefly Bemisia tabaci. NetMet, a new web-based tool, is available at https://freilich-lab-tools.com/.

Influence of N-acylhomoserine lactonase silver nanoparticles on the quorum sensing system of Helicobacter pylori: A potential strategy to combat biofilm formation.

The treatment of Helicobacter pylori usually fails due to their ability to form biofilms and resistance to antibiotics. This might potentially lead to gastric carcinoma and mucosa-associated lymphoid tissue lymphoma. In the present study, we elucidate the potential role of N-acylhomoserine lactonase stabilized silver nanoparticles (AiiA-AgNPs) in treating biofilms produced by H. pylori. AiiA-AgNPs inhibited quorum sensing (QS) by degradation of QS molecules, thereby reducing biofilm formation, urease production, and altering cell surface hydrophobicity of H. pylori. AiiA-AgNPs showed no cytotoxic effects on RAW 264.7 macrophages at the effective concentration (1-5 µM) of antibiofilm activity. In addition, AiiA-AgNP in high concentration (80-100 µM) exhibited cytotoxicity against HCT-15 carcinoma cells, depicting its therapeutic role in treating cancer.

Review on Anti-Cancer Activity in Wild Plants of the Middle East.

BACKGROUND: The Mediterranean basin is one of the richest biodiversity areas in the world, and the use of medicinal plants for treating cancer in this area has been documented for generations in different cultures. OBJECTIVE: To present and discuss the findings related to medicinal plants with confirmed data on active compounds and/or clear mode of action. METHODS: We undertook a structured search of bibliography of peer-reviewed research literature using key words and a focused review question. Papers with sufficient quality were reviewed, their findings presented and integrated into a coherent, state of the art document on wild plants of the Middle East with anti-cancer activity. RESULTS: 121 papers were included in the review, among them 10 define herbal medicine, 3 describe the status of cancer worldwide, 18 discuss biodiversity, chemodiversity, ethnopharmacological survey and conservation of medicinal plants, 12 describe well known natural products from plants used to treat cancer and 78 papers describe specific compounds and mode of action in different wild plants from the middle east, traditionally used to treat cancer. CONCLUSIONS: Confirmed data on active compounds and/or clear mode of action exist for several wild plants traditionally used in herbal medicine to treat cancer. Yet, medicinal plants were mainly gathered from the wild, resulting in some of the commonly used herbs becoming endangered species. Also, in many cases, the activity and biochemical profile of plants harvested over different time spans and ecosystems may vary. Rational cultivation may ensure optimized yield with a uniform high quality of products.

Anti-Inflammatory Activity in Colon Models Is Derived from Δ9-Tetrahydrocannabinolic Acid That Interacts with Additional Compounds in Cannabis Extracts.

Introduction: Inflammatory bowel diseases (IBDs) include Crohn's disease, and ulcerative colitis. Cannabis sativa preparations have beneficial effects for IBD patients. However, C. sativa extracts contain hundreds of compounds. Although there is much knowledge of the activity of different cannabinoids and their receptor agonists or antagonists, the cytotoxic and anti-inflammatory activity of whole C. sativa extracts has never been characterized in detail with in vitro and ex vivo colon models. Material and Methods: The anti-inflammatory activity of C. sativa extracts was studied on three lines of epithelial cells and on colon tissue. C. sativa flowers were extracted with ethanol, enzyme-linked immunosorbent assay was used to determine the level of interleukin-8 in colon cells and tissue biopsies, chemical analysis was performed using high-performance liquid chromatography, mass spectrometry and nuclear magnetic resonance and gene expression was determined by quantitative real-time PCR. Results: The anti-inflammatory activity of Cannabis extracts derives from D9-tetrahydrocannabinolic acid (THCA) present in fraction 7 (F7) of the extract. However, all fractions of C. sativa at a certain combination of concentrations have a significant increased cytotoxic activity. GPR55 receptor antagonist significantly reduces the anti-inflammatory activity of F7, whereas cannabinoid type 2 receptor antagonist significantly increases HCT116 cell proliferation. Also, cannabidiol (CBD) shows dose dependent cytotoxic activity, whereas anti-inflammatory activity was found only for the low concentration of CBD, and in a bell-shaped rather than dose-dependent manner. Activity of the extract and active fraction was verified on colon tissues taken from IBD patients, and was shown to suppress cyclooxygenase-2 (COX2) and metalloproteinase-9 (MMP9) gene expression in both cell culture and colon tissue. Conclusions: It is suggested that the anti-inflammatory activity of Cannabis extracts on colon epithelial cells derives from a fraction of the extract that contains THCA, and is mediated, at least partially, via GPR55 receptor. The cytotoxic activity of the C. sativa extract was increased by combining all fractions at a certain combination of concentrations and was partially affected by CB2 receptor antagonist that increased cell proliferation. It is suggested that in a nonpsychoactive treatment for IBD, THCA should be used rather than CBD.

Functional soil microbiome: belowground solutions to an aboveground problem.

There is considerable evidence in the literature that beneficial rhizospheric microbes can alter plant morphology, enhance plant growth, and increase mineral content. Of late, there is a surge to understand the impact of the microbiome on plant health. Recent research shows the utilization of novel sequencing techniques to identify the microbiome in model systems such as Arabidopsis (Arabidopsis thaliana) and maize (Zea mays). However, it is not known how the community of microbes identified may play a role to improve plant health and fitness. There are very few detailed studies with isolated beneficial microbes showing the importance of the functional microbiome in plant fitness and disease protection. Some recent work on the cultivated microbiome in rice (Oryza sativa) shows that a wide diversity of bacterial species is associated with the roots of field-grown rice plants. However, the biological significance and potential effects of the microbiome on the host plants are completely unknown. Work performed with isolated strains showed various genetic pathways that are involved in the recognition of host-specific factors that play roles in beneficial host-microbe interactions. The composition of the microbiome in plants is dynamic and controlled by multiple factors. In the case of the rhizosphere, temperature, pH, and the presence of chemical signals from bacteria, plants, and nematodes all shape the environment and influence which organisms will flourish. This provides a basis for plants and their microbiomes to selectively associate with one another. This Update addresses the importance of the functional microbiome to identify phenotypes that may provide a sustainable and effective strategy to increase crop yield and food security.