Genetic diversity and population structure of Raffaelea quercus-mongolicae, a fungus associated with oak mortality in South Korea.

Raffaelea quercus-mongolicae is a fungus associated with oak wilt and deemed to cause extensive oak mortality in South Korea. Since the discovery of this fungus on a dead Mongolian oak (Quercus mongolica) in 2004, the mortality continued to spread southwards in South Korea. Despite continued expansion of the disease and associated significant impacts on forest ecosystems, information is lacking about the origin and genetic diversity of R. quercus-mongolicae. Restriction-site-Associated DNA (RAD) sequencing was used to assess genetic diversity and population structure among five populations (provinces) of R. quercus-mongolicae in South Korea. In total, 179 single nucleotide polymorphisms (SNPs) were identified among 2,639 RAD loci across the nuclear genome of the 54 R. quercus-mongolicae isolates (0.0012 SNPs per bp), which displayed an overall low expected heterozygosity and no apparent population structure. The low genetic diversity and no apparent population structure among South Korean populations of this ambrosia beetle-vectored fungus supports the hypothesis that this fungus was introduced to South Korea.

First Report of Anthracnose of Smoothlip Cymbidium (Cymbidium kanran) Caused by Colletotrichum gloeosporioides in Korea.

Smoothlip cymbidium (Cymbidium kanran Makino) is one of the national endangered species in Korea and in situ and ex situ conservation measures have been implemented for its threatened habitat and population. Jeju Island in Korea is one of few places where wild populations of the plant remain. In 2012, leaf blotch and blight occurred on leaves of smoothlip cymbidium in Jeju Island throughout the growing season. Affected plants were collected in May and October to determine the causal agent. Leaves had multiple brownish lesions that often developed from the leaf tip or leaf margin, eventually coalescing together and proceeding toward the base. In the lesions, fungal fruiting bodies formed concentric rings and exuded salmon-colored spore masses when put in moist chambers for 1 to 2 days. Colletotrichum gloeosporioides was consistently isolated from the spore masses or the margins of fresh lesions. When cultured on potato dextrose agar (PDA), colonies were olive to gray on the upper side and dark gray to black on the reverse side. On affected leaves, mature acervuli were dark brown to black, waxy, subepidermal, circular to ellipsoid, and 142 to 255 µm in diameter. Setae on the acervuli were dark brown, acicular, and 67 to 103 µm long. Conidia were hyaline, cylindrical with both ends rounded, and 13.7 to 19.2 × 4.0 to 6.1 µm. Hyphopodia were lobed and 7.6 to 13.7 × 5.7 to 11.6 µm (43 to 157 µm2 in area). These morphological characteristics were consistent with descriptions of C. gloeosporioides (1,3). The identities of two representative isolates were confirmed by sequencing the internal transcribed spacer (ITS) regions and the large subunit (LSU) rDNA (GenBank Accession Nos. KC408373, KC408374, and KC408375). BLAST analysis of the sequences from each isolate against the GenBank database found 99% similarities to more than 30 accessions of C. gloeosporioides (e.g., AY266392, EU552111). Pathogenicity was tested with one isolate on four leaves obtained from four plants of asymptomatic smoothlip cymbidium. Two places on the epidermis of each leaf were gently pinpricked using a sterile dissecting needle. One disk (0.6 cm diameter) of either PDA containing the fungus or sterile water agar was placed on one of the two places on each leaf. Laboratory film and aluminum foil held the disks in place. Inoculated leaves were kept in a moist chamber for 24 hr. After 1 week, buff-colored lesions with young acervuli were found on all fungus inoculation sites but no lesions occurred with control inoculations. C. gloeosporioides was recovered from all inoculations, but not from the controls. To our knowledge, this is the first report of anthracnose caused by C. gloeosporioides on smoothlip cymbidium in Korea. The same fungus has been previously reported to cause anthracnose of other orchid plants in the genera Aspidistra, Cymbidium, and Dendrobium in Korea (2). This pathogen can pose a threat to smoothlip cymbidium. References: (1) M. Du et al. Mycologia 97: 641, 2005. (2) The Korean Society of Plant Pathology. List of Plant Diseases in Korea, 5th ed. The Korean Society of Plant Pathology, Suwon, Korea, 2009. (3) B. C. Sutton. Pages 1-26 in: Colletotrichum: Biology, Pathology, and Control. J. A. Bailey and M. J. Jeger, eds. CAB International, Wallingford, U.K., 1992.

First Report of Leaf Spot Caused by Pseudocercospora subsessilis on Melia azedarach in Korea.

Melia azedarach L., called chinaberry, is native to Southeast Asia and Australia. The trees are commonly planted as ornamentals in the southern part of Korea. In October 2010, a leaf spot disease was observed on trees for the first time in Wando, Korea. Further surveys conducted from 2010 to 2012 showed that the disease occurs on trees in Jeju, Seogwipo, and Tongyeong cities as well as Wando county with nearly 100% incidence. Leaf spots were circular to semicircular, later becoming angular, small, pale brown in the center with a dark brown margin, and later becoming milky white. Leaf spots sometimes coalesced to blight the entire leaf and were capable of rapidly defoliating whole trees in late September. Fruiting was amphigenous, but mostly hypogenous. Stromata were substomatal, globular, dark brown, and 25 to 70 µm in diameter. Conidiophores were densely fasciculate, pale olivaceous to pale brown, substraight to mildly curved, not geniculate, 10 to 30 µm long, 2.5 to 4.5 µm wide, and aseptate or uniseptate. Conidia were pale olivaceous, generally darker than conidiophores, cylindric to obclavate, substraight in shorter ones, curved to mildly sinuous in longer ones, obconically truncate at the base, obtuse at the apex, 2- to 14-septate, 16 to 120 × 3 to 5 µm, guttulate, and had inconspicuous hila. Morphological characteristics of the fungus were consistent with the previous descriptions of Pseudocercospora subsessilis (Syd. & P. Syd.) Deighton (2). Voucher specimens (n = 6) were deposited in the Korea University Herbarium (KUS). An isolate from KUS-F25395 was deposited in the Korean Agricultural Culture Collection (KACC45688). The complete internal transcribed spacer (ITS) region of rDNA was amplified with the primers ITS1/ITS4 (3) and sequenced. The resulting sequence of 517 bp was deposited in GenBank (Accession No. JX993904). A BLAST search in GenBank revealed that the sequence shows >99% similarity (1 bp substitution) with a sequence of P. subsessilis ex M. azedarach from Cuba (GU269815). For pathogenicity tests, hyphal suspensions were prepared by grinding 3-week-old colonies grown on potato dextrose agar with distilled water using a mortar and pestle. Five 3-year-old chinaberry trees were inoculated with hyphal suspensions using a fine haired paint brush. Three healthy trees of the same age, serving as controls, were sprayed with sterile water. The plants were covered with plastic bags to maintain 100% relative humidity for 24 h and then transferred to a greenhouse. Typical symptoms of necrotic spots that appeared on the inoculated leaves 10 days after inoculation were identical to the ones observed in the field. P. subsessilis was reisolated from symptomatic leaf tissues, confirming Koch's postulates. No symptoms were observed on control plants. The disease has been reported in several Asian countries as well as in Cuba and the United States (1). To our knowledge, this is the first report of leaf spot on chinaberry caused by P. subsessilis in Korea. The observed high incidence and severity suggest that this disease can be a limiting factor in utilizing this tree species as ornamentals in public areas. References: (1) D. F. Farr and A. Y. Rossman. Fungal Databases. Syst. Mycol. Microbiol. Lab., Online publication, ARS, USDA, Retrieved October 22, 2012. (2) Y. L. Guo and W. H. Hsieh. The genus Pseudocercospora in China. International Academic Publishers, Beijing, China, 1995. (3) T. J. White et al. PCR Protocols. Academic Press, San Diego, CA, 1990.

First Report of Leaf Spot Caused by Corynespora cassiicola on Rose of Sharon in Korea.

Rose of Sharon, Hibiscus syriacus L., is a flowering shrub in the family Malvaceae planted as the national flower of South Korea. In September 2012, previously unknown leaf spots with premature defoliation were observed on dozens of Rose of Sharon plants growing in the shaded area in a park of Dongducheon, Korea. The same symptoms were found on Rose of Sharon in several localities of Korea in 2012. The symptoms usually started as small, dark brown to grayish leaf spots, eventually causing leaf yellowing with significant premature defoliation. The diseased leaves retained for a while green color at the margin of the spots. Representative samples (n = 5) were deposited in the Korea University Herbarium (KUS). Conidiophores of the fungus observed microscopically on the leaf spots were erect, brown to dark brown, single or in clusters, amphigenous but mostly hypophyllous, and measured 80 to 400 × 5 to 10 µm. Conidia were borne singly or in short chains, ranging from cylindrical to broadest at the base and tapering apically, straight to slightly curved, pale olivaceous brown, 2 to 16 pseudoseptate, 50 to 260 × 9 to 20 µm, each with a conspicuous thickened hilum. On potato dextrose agar, single-spore cultures of two isolates were identified as Corynespora cassiicola (Berk. & M.A. Curtis) C.T. Wei on the basis of morphological and cultural characteristics (1,2). Two monoconidial isolates were preserved at the Korean Agricultural Culture Collection (KACC46956 and KACC46957). Genomic DNA was extracted using the DNeasy Plant Mini DNA Extraction Kit (Qiagen Inc., Valencia, CA). The complete internal transcribed spacer (ITS) region of rDNA was amplified with the primers ITS1/ITS4 and sequenced. The resulting sequences of 520 bp were deposited in GenBank (Accession Nos. KC193256, KC193257). A BLAST search in GenBank revealed that the sequences showed 100% identity with those of numerous C. cassiicola isolates from diverse substrates. To conduct a pathogenicity test, a conidial suspension (ca. 2 × 104 conidia/ml) was prepared in sterile water by harvesting conidia from 2-week-old cultures of KACC46956, and the suspension was sprayed onto the leaves of three healthy 2-year-old plants. Inoculated plants were kept in humid chambers for the first 48 h and thereafter placed in the glasshouse. After 10 days, typical leaf spot symptoms developed on the leaves of all three inoculated plants. C. cassiicola was reisolated from the lesions, confirming Koch's postulates. Control plants treated with sterile water remained symptomless. C. cassiicola is cosmopolitan with a very wide host range (1,2). Though Corynespora hibisci Goto was recorded to be associated with brown spot disease of H. syriacus in Japan (4), there is no previous record of C. cassiicola on H. syriacus (3). To our knowledge, this is the first report of Corynespora leaf spot on Rose of Sharon in Korea. According to our field observations in Korea, this disease was found in August and September, following a prolonged period of moist weather. Severe infection resulted in leaf yellowing and premature defoliation, reducing tree vigor and detracting the beauty of green leaves. References: (1) L. J. Dixon et al. Phytopathology 99:1015, 2009. (2) M. B. Ellis. Dematiaceous Hyphomycetes. Commonw. Mycol. Inst., Kew, UK, 1971. (3) D. F. Farr and A. Y. Rossman. Fungal Databases. Syst. Mycol. Microbiol. Lab., Online publication, ARS, USDA, Retrieved November 22, 2012. (4) K. Goto. Ann. Phytopathol. Soc. Japan 12:14, 1942.

First Report of Brown Spot Needle Blight on Pinus thunbergii Caused by Lecanosticta acicola in Korea.

Pinus thunbergii Parl., known as black pine, is a pine native to coastal areas of Japan and Korea. Because of its resistance to pollution and salt, it is planted as windbreakers along the coast. In March 2010, needle blight symptoms were found on several trees of black pine in Naju, southern Korea. Further surveys in 2010 and 2011 showed that these symptoms are rather common but disease incidence is less than 1%. Small, circular grayish green spots first appeared on the needles. The spots developed into brown bands reaching 1 to 2 mm long, sometimes with yellow margins. Dark olivaceous to dark grayish stromata were erumpent and conspicuous on the brown lesions in the later stage of disease development. Conidiophores were simple or occasionally branched, 1- to 2-septate, pale brown to olivaceous brown, and smooth walled. Conidia (n = 30) were olivaceous brown to grayish brown, verrucose, thick-walled, mildly curved, allantoid to fusiform, one- to five-septate (mostly three-septate), and 20 to 45 × 3.5 to 5 µm. Morphological characteristics of the fungus were consistent with those of Lecanosticta acicola (Thüm.) Syd. (anamorph of Mycosphaerella dearnessii M.E. Barr), previously known as the causal agent of brown spot needle blight of pines (2,4). The teleomorph was not observed. On potato dextrose agar, single-spore cultures of three isolates were obtained from conidia sporulating on needles. An isolate was preserved at the Korean Agricultural Culture Collection (Accession No. KACC44982). Genomic DNA was extracted using the DNeasy Plant Mini DNA Extraction Kit (Qiagen Inc., Valencia, CA) and the complete internal transcribed spacer (ITS) region of rDNA was amplified and sequenced with the primers ITS1/ITS4. The resulting ITS sequence of 543 bp was deposited in GenBank (Accession No. JQ245448). A GenBank BLAST search produced an exact match for the sequences of M. dearnessii (= L. acicola) on P. mugo Tura from Lithuania (HM367708) and P. radiata D. Don from France (GU214663), with 100% sequence similarity. To conduct a pathogenicity test, a conidial suspension (approx. 2 × 105 conidia/ml) was prepared by harvesting conidia from 5-week-old cultures of KACC44982 and sprayed onto the needles of five 3-year-old healthy seedlings. Five noninoculated seedlings of the same age served as controls. Inoculated and noninoculated plants were kept in humid chambers for 48 h in a glasshouse. After 28 days, typical leaf spot symptoms started to develop on the needles of inoculated plants. The fungus, L. acicola, was reisolated from those lesions, confirming Koch's postulates. No symptoms were observed on control plants. The disease has been previously reported on several species of Pinus in the Americas (1) and recently in China (3), Japan (4), and Europe (2). To our knowledge, this is the first report of the Lecanosticta-Pinus association in Korea. Occurrence of the disease in Korea is a new threat to the health of black pine, especially in nursery plots. References: (1) D. F. Farr and A. Y. Rossman. Fungal Databases. Systematic Mycology and Microbiology Laboratory, ARS, USDA. Retrieved from http://nt.arsgrin.gov/fungaldatabases/ December 2011. (2) L. Jankovsky et al. Plant Protect. Sci. 45:16, 2009. (3) C. Li et al. J. Nanjing Inst. For. 1986:11, 1986. (4) Y. Suto and D. Ougi. Mycoscience 39:319, 1998.

PCR-based identification and characterization of Burkholderia cepacia complex bacteria from clinical and environmental sources.

AIMS: To study the genotypic identification and characterization of the 119 Burkholderia cepacia complex (Bcc) strains recovered from clinical and environmental sources in Japan and Thailand. METHODS AND RESULTS: Based on the results of analysis by 16S rDNA RFLP generated after digestion with DdeI, the Bcc strains were differentiated into two patterns: pattern 1 (including Burkholderia vietnamiensis) and pattern 2 (including B. cepacia genomovar I, Burkholderia cenocepacia and Burkholderia stabilis). All strains belonged to pattern 2 except for one strain. In the RFLP analysis of the recA gene using HaeIII, strains were separated into eight patterns designated as A, D, E, G, H, I, J and K, of which pattern K was new. Burkholderia cepacia epidemic strain marker (BCESM) encoded by esmR [corrected] and the pyrrolnitrin biosynthetic locus encoded by prnC were present in 22 strains (18%) and 88 strains (74%) from all sources, respectively. All esmR-positive [corrected] strains belonged to B. cenocepacia, whereas most prnC-positive strains belonged to B. cepacia genomovar I. CONCLUSIONS: Strains derived from clinical sources were assigned to B. cepacia genomovar I, B. cenocepacia, B. stabilis and B. vietnamiensis. The majority of Bcc strains from environmental sources (77 of a total 95 strains) belonged to B. cepacia genomovar I, whereas the rest belonged to B. cenocepacia. On the basis of genomovar-specific PCR and prnC RFLP analysis, strains belonging to recA pattern K were identified as B. cepacia genomovar I. SIGNIFICANCE AND IMPACT OF THE STUDY: This work provides the genotypic identification of a collection of the Bcc strains from Japan and Thailand. RFLP analysis of the prnC gene promises to be a useful method for differentiating Burkholderia pyrrocinia from B. cepacia genomovar I strains.