Small- and large-scale processes including anthropogenic pressures as drivers of gastropod communities in the NE Atlantic coast: A citizen science based approach.

Rocky-shores are among the most threatened coastal habitats, particularly under human pressures. While rocky-shore communities have been increasingly used to evaluate local anthropogenic perturbations such as water eutrophication for instance, large-scale variability in relation to both natural and anthropogenic pressures is still overlooked. Here, using citizen science-based data, we applied a Random Forest modelling approach to assess the relative impact of both small-and large-scale processes (including natural and some anthropogenic pressures) on intertidal gastropod communities as well as taxa-specific gastropod abundances over more than 1000 km of the North-East Atlantic coast. Our model results demonstrate that small-scale conditions (i.e. within shore) are determinant in shaping gastropod communities. However, community responses are mainly driven by taxon-specific effects. Among large-scale predictors, high concentrations of inorganic nutrients and total suspended matter, as found in large river plumes, are the main drivers impacting the gastropod communities by depleting both taxon abundances and richness. According to models, the decline in abundance of the yet most prevalent taxa (Steromphala umbilicalis, Patella spp., S. pennanti and Phorcus lineatus) is expected to be between 65% and 85%, while Littorina littorea was the only taxon which may be favoured by high concentrations of inorganic nutrients and total suspended matter. Such results provide relevant insights in the context of ever-increasing needs for bioindicators of coastal ecosystems. Finally, this work sheds light on the value of a citizen science program resulting from a consultation between professional and citizen volunteers as a useful and efficient tool to investigate large-scale processes.

Local adaptations of Mediterranean sheep and goats through an integrative approach.

Small ruminants are suited to a wide variety of habitats and thus represent promising study models for identifying genes underlying adaptations. Here, we considered local Mediterranean breeds of goats (n = 17) and sheep (n = 25) from Italy, France and Spain. Based on historical archives, we selected the breeds potentially most linked to a territory and defined their original cradle (i.e., the geographical area in which the breed has emerged), including transhumant pastoral areas. We then used the programs PCAdapt and LFMM to identify signatures of artificial and environmental selection. Considering cradles instead of current GPS coordinates resulted in a greater number of signatures identified by the LFMM analysis. The results, combined with a systematic literature review, revealed a set of genes with potentially key adaptive roles in relation to the gradient of aridity and altitude. Some of these genes have been previously implicated in lipid metabolism (SUCLG2, BMP2), hypoxia stress/lung function (BMPR2), seasonal patterns (SOX2, DPH6) or neuronal function (TRPC4, TRPC6). Selection signatures involving the PCDH9 and KLH1 genes, as well as NBEA/NBEAL1, were identified in both species and thus could play an important adaptive role.

Search for Selection Signatures Related to Trypanosomosis Tolerance in African Goats.

Livestock is heavily affected by trypanosomosis in Africa. Through strong selective pressure, several African indigenous breeds of cattle and small ruminants have acquired varying degrees of tolerance against this disease. In this study, we combined LFMM and PCAdapt for analyzing two datasets of goats from West-Central Africa and East Africa, respectively, both comprising breeds with different assumed levels of trypanotolerance. The objectives were (i) to identify molecular signatures of selection related to trypanotolerance; and (ii) to guide an optimal sampling for subsequent studies. From 33 identified signatures, 18 had been detected previously in the literature as being mainly associated with climatic adaptations. The most plausible signatures of trypanotolerance indicate the genes DIS3L2, COPS7B, PD5A, UBE2K, and UBR1. The last gene is of particular interest since previous literature has already identified E3-ubiquitin ligases as playing a decisive role in the immune response. For following-up on these findings, the West-Central African area appears particularly relevant because of (i) a clear parasitic load gradient related to a humidity gradient, and (ii) still restricted admixture levels between goat breeds. This study illustrates the importance of protecting local breeds, which have retained unique allelic combinations conferring their remarkable adaptations.

The origin of sheep settlement in Western Mediterranean.

The arrival of Neolithic culture in North Africa, especially domestic animals has been essentially documented from archaeological records. As the data relative to sheep are scarce, we studied the genetic relationship between Moroccan sheep breeds and Mediterranean ones using the sequencing of 628 bp of the mitochondrial DNA control region in 193 Moroccan individuals, belonging to six breeds, and 652 sequences from other breeds in Europe and Middle East. Through Network analysis and an original phylogenetically derived method, the connection proportions of each Moroccan breed to foreign ones were estimated, highlighting the strong links between Moroccan and Iberian breeds. The first founders of Moroccan sheep population were issued at 79% from Iberia and 21% from a territory between Middle East and Africa. Their calculated expansion times were respectively 7,100 and 8,600 years B.P. This suggests that Neolithization was introduced by a double influence, from Iberia and from another route, maybe Oriental or Sub-Saharan. The consequence of the environmental changes encountered by founders from Iberia was tested using different neutrality tests. There are significant selection signatures at the level of Moroccan and European breeds settled in elevated altitudes, and an erosion of nucleotide diversity in Moroccan breeds living in arid areas.