Confidence-based active learning.

This paper proposes a new active learning approach, confidence-based active learning, for training a wide range of classifiers. This approach is based on identifying and annotating uncertain samples. The uncertainty value of each sample is measured by its conditional error. The approach takes advantage of current classifiers' probability preserving and ordering properties. It calibrates the output scores of classifiers to conditional error. Thus, it can estimate the uncertainty value for each input sample according to its output score from a classifier and select only samples with uncertainty value above a user-defined threshold. Even though we cannot guarantee the optimality of the proposed approach, we find it to provide good performance. Compared with existing methods, this approach is robust without additional computational effort. A new active learning method for support vector machines (SVMs) is implemented following this approach. A dynamic bin width allocation method is proposed to accurately estimate sample conditional error and this method adapts to the underlying probabilities. The effectiveness of the proposed approach is demonstrated using synthetic and real data sets and its performance is compared with the widely used least certain active learning method.

CASMIL: a comprehensive software/toolkit for image-guided neurosurgeries.

BACKGROUND: CASMIL aims to develop a cost-effective and efficient approach to monitor and predict deformation during surgery, allowing accurate, and real-time intra-operative information to be provided reliably to the surgeon. METHOD: CASMIL is a comprehensive Image-guided Neurosurgery System with extensive novel features. It is an integration of various modules including rigid and non-rigid body co-registration (image-image, image-atlas, and image-patient), automated 3D segmentation, brain shift predictor, knowledge based query tools, intelligent planning, and augmented reality. One of the vital and unique modules is the Intelligent Planning module, which displays the best surgical corridor on the computer screen based on tumor location, captured surgeon knowledge, and predicted brain shift using patient specific Finite Element Model. Also, it has multi-level parallel computing to provide near real-time interaction with iMRI (Intra-operative MRI). In addition, it has been securely web-enabled and optimized for remote web and PDA access. RESULTS: A version of this system is being used and tested using real patient data and is expected to be in use in the operating room at the Detroit Medical Center in the first half of 2006. CONCLUSION: CASMIL is currently under development and is targeted for minimally invasive surgeries. With minimal changes to the design, it can be easily extended and made available for other surgical procedures.

Mining HIV dynamics using independent component analysis.

MOTIVATION: We implement a data mining technique based on the method of Independent Component Analysis (ICA) to generate reliable independent data sets for different HIV therapies. We show that this technique takes advantage of the ICA power to eliminate the noise generated by artificial interaction of HIV system dynamics. Moreover, the incorporation of the actual laboratory data sets into the analysis phase offers a powerful advantage when compared with other mathematical procedures that consider the general behavior of HIV dynamics. RESULTS: The ICA algorithm has been used to generate different patterns of the HIV dynamics under different therapy conditions. The Kohonen Map has been used to eliminate redundant noise in each pattern to produce a reliable data set for the simulation phase. We show that under potent antiretroviral drugs, the value of the CD4+ cells in infected persons decreases gradually by about 11% every 100 days and the levels of the CD8+ cells increase gradually by about 2% every 100 days. AVAILABILITY: Executable code and data libraries are available by contacting the corresponding author. IMPLEMENTATION: Mathematica 4 has been used to simulate the suggested model. A Pentium III or higher platform is recommended.