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1.
J Vet Med Sci ; 81(12): 1824-1828, 2019 Dec 26.
Article in English | MEDLINE | ID: mdl-31564680

ABSTRACT

Bovine enteroviruses (BEV) are members of Enterovirus genus of the family Picornaviridae. BEV1 has a broad host spectrum, including humans. The virus usually causes subclinical infection, but fatal/severe cases have also been reported in different animal species. There is quite limited data regarding BEV1 in humans. The purpose of this study is to investigate human infection and to identify possible risk factors for viral exposure. For this purpose, blood serum samples (n=1,526) were collected from a city center and nearby villagers simultaneously from humans and farm animals in Elazig province in Eastern Anatolia. As a result of serum neutralisation test, BEV1 specific antibody presence detected in cattle was 85.3% (163/191), 73.5% in donkeys (64/87), 71.8% in goats (115/160), 46.5% in sheep (93/200), 43.9% in horses (40/91), 41.3% in dogs (19/46) and 33% in humans (248/751). Although a high contamination potential was mentioned for people living in rural areas, it was determined that infection rates in rural areas (31.6%) and urban centers (32.2%) were very close. There was no difference according to sex. Viral exposure is higher in the 40 to 70 age range. In addition, the serological evidence of the infection in donkeys was identified for the first time with this study.


Subject(s)
Enterovirus Infections/epidemiology , Enterovirus, Bovine/isolation & purification , Zoonoses/epidemiology , Adolescent , Adult , Aged , Aged, 80 and over , Animals , Antibodies, Viral/blood , Child , Child, Preschool , Dogs/virology , Enterovirus Infections/veterinary , Enterovirus, Bovine/immunology , Female , Humans , Infant , Livestock/virology , Male , Middle Aged , Turkey/epidemiology
2.
Mikrobiyol Bul ; 50(2): 307-14, 2016 Apr.
Article in Turkish | MEDLINE | ID: mdl-27175504

ABSTRACT

Although Plasmodium vivax is the only cause of malaria cases detected in Turkey, an increase number of imported P.falciparum cases have begun to be observed recently. Sanliurfa is a province located at Southeastern region of Turkey where malaria is endemic and also one of the two largest malaria epidemics of Turkey was experienced with 84.345 cases in 1994. As this region has borders with countries like Iraq, Iran and Syria, cross border migration caused an increase in imported cases. In addition, climate change, alteration in temperature and humidity due to the Southeastern Anatolian Irrigation Project have led an increase in suitable breeding grounds for mosquitoes. Since new indigenous malaria cases, except imported ones are not detected in Sanliurfa nowadays, there is not enough data on the malaria epidemiology in this region including recent years. The aim of this study was to evaluate the epidemiological data in connection with malaria cases observed in Sanliurfa which is a critical region for this infection for a 11-year-period, between the years of 2001 to 2011, retrospectively. Data obtained from the Malaria Control Unit of the Communicable Diseases Division of Sanliurfa Provincial Health Directorate were analized in terms of frequency of the cases, distribution of the cases in years and months, demographical characteristics, the source and species distribution of the parasite and the locations of the disease. A total of 1.149.196 blood smear samples have been examined during 11-year-period as part of surveillance programme and 4394 (0.4%) of them were positive for Plasmodium spp. The agent was P.vivax in 99.9% (4391/4394) of the cases, while in three cases (0.07%) who were diagnosed after 2010, it was P.falciparum. Of the patients 2351 (53.5%) were male and 2043 (46.5%) were female (p> 0.05), whose age ranging from 3 months to 80 years (mean age: 19.21 ± 16.12 years). The frequencies of the cases according to the age groups 0-11 months, 1-4 years, 5-9 years, 10-14 years and 15 years were as follows; 2.5%, 15.1%, 18%, 13.9% and 50.5%, respectively. The detection of Plasmodium spp. in the samples examined in 2002 (1244/110.533; 1.1%) was the highest, and in 2011 (1/50.981; 0.002%) was the lowest. The distribution rates of 4394 cases according to the years between 2001 to 2011, were found as 25.4%, 28.3%, 17.8%, 10.9%, 8.9%, 5.6%, 1.4%, 1.4%, 0.2%, 0.009% and 0.02%, respectively. Of all cases, 80.6% were autochthonous and 19.4% were imported. Most of the cases were detected in Siverek county with a rate of 71.4%, followed by Ceylanpinar (13.5%) and Viransehir (6.6%) counties. Although malaria cases were detected throughout the year in Sanliurfa in respect to the climate, the highest numbers were recorded in September (832/4394; 18.9%) and November (1054/4394; 24%). This study emphasized that malaria cases due to local transmission declined to zero in Sanliurfa like the recent situation in Turkey. However, P.falciparum malaria cases are being reported due to the travels to endemic countries or migrations from those countries. Effective malaria control attempts, within the scope of Malaria Elimination Programme implemented in Turkey, should be continued with the same stability without any abruption in Sanliurfa province where the disease had been endemic in the past.


Subject(s)
Malaria, Falciparum/epidemiology , Malaria, Vivax/epidemiology , Adolescent , Adult , Aged , Aged, 80 and over , Child , Child, Preschool , Climate Change , Female , Humans , Humidity , Infant , Male , Middle Aged , Retrospective Studies , Temperature , Turkey/epidemiology , Young Adult
3.
Malar J ; 15(1): 299, 2016 May 28.
Article in English | MEDLINE | ID: mdl-27234320

ABSTRACT

BACKGROUND: The objective of this study to detect Plasmodium and a subspecies of Plasmodium using filter paper in malaria endemic province, Sanliurfa, in Turkey, compare the results of nested PCR (nPCR) with microscopy for the diagnosis of malaria and present the epidemiological data of malaria. METHODS: This study was carried out in malaria-endemic Sanliurfa between 2008 and 2011. Finger prick blood samples, thick and thin Giemsa-stained blood smears, were collected from 153 malaria-suspected farmworkers. The Giemsa-stained blood smears were examined microscopically. The obtained DNA products, extracted from blood-spotted filter papers or from the thick blood smears, were analysed by nPCR to amplify the 18S ssrRNA Plasmodium gene with genus and specific primers. The results of the microscopy were compared to the nPCR results. RESULTS: Of the specimens, 7.2 % were determined as Plasmodium-positive by microscopy, whereas 9.8 % were determined as Plasmodium-positive by nPCR. Of the positive Plasmodium specimens, 93.33 % were identified as P. vivax. Four out of the 15 specimens that were microscopically diagnosed as negative were Plasmodium-positive with nPCR. When compared to the microscopy, the sensitivity, specificity, and positive predictive values of the nPCR were determined as 100, 97.2 and 73.3 %, respectively. nPCR was determined to be more sensitive and specific than microscopy. CONCLUSIONS: This study revealed that the accurate diagnosis of malaria by nPCR was compulsory in malaria-endemic Sanliurfa and nPCR should be applied routinely in laboratory studies.


Subject(s)
Blood/parasitology , Diagnostic Tests, Routine/methods , Malaria/diagnosis , Plasmodium/isolation & purification , Polymerase Chain Reaction/methods , Specimen Handling/methods , Adolescent , Adult , Aged , Child , Child, Preschool , DNA, Protozoan/genetics , DNA, Ribosomal/genetics , Female , Humans , Infant , Malaria/epidemiology , Male , Microscopy/methods , Middle Aged , Paper , Plasmodium/genetics , RNA, Ribosomal, 18S/genetics , Sensitivity and Specificity , Turkey/epidemiology , Young Adult
4.
Turk J Med Sci ; 44(6): 1041-6, 2014.
Article in English | MEDLINE | ID: mdl-25552158

ABSTRACT

BACKGROUND/AIM: ß-Lactamases are an important resistance mechanism in Acinetobacter baumannii. Pseudomonas extended-resistance (PER-1) type ß-lactamase-producing strains have been reported from various geographic locations; however, PER-1 type ß-lactamases from Turkish hospitals have not been investigated extensively. The aim of this study was to determine the prevalence of PER-1 type ß-lactamases in A. baumannii isolates in various regions of Turkey. MATERIALS AND METHODS: A total of 763 clinical A. baumannii isolates were collected from 9 university hospitals and 2 state hospitals between 2008 and 2011. Molecular amplification of the OXA-51 gene from the A. baumannii genome was performed in order to verify identification of the species. Real-time polymerase chain reaction was used to detect blaPER-1 genes. RESULTS: PER-1 was detected in 24.6% of the isolates. The annual frequencies of the PER-1 enzyme were detected as 52.2%, 35.9%, and 8.3% in 2008, 2009, and 2010, respectively. PER-1 prevalence decreased gradually over time. The differences observed in PER-1 prevalence among the regions of Turkey were statistically significant (chi-square test; P < 0.001). CONCLUSION: These data demonstrate that the frequency of detection of PER-1 type ß-lactamases in A. baumannii species has decreased in Turkey. However, the increased carbapenem resistance, together with multidrug resistance, has created a worrisome situation regarding this pathogen.


Subject(s)
Acinetobacter baumannii/enzymology , Acinetobacter baumannii/genetics , beta-Lactamases/isolation & purification , Acinetobacter Infections/drug therapy , Acinetobacter Infections/epidemiology , Acinetobacter baumannii/isolation & purification , Carbapenems , Cross Infection/epidemiology , Cross Infection/microbiology , Drug Resistance, Microbial/genetics , Humans , Microbial Sensitivity Tests , Prevalence , Real-Time Polymerase Chain Reaction , Seroepidemiologic Studies , Turkey/epidemiology
5.
Mikrobiyol Bul ; 47(4): 592-602, 2013 Oct.
Article in Turkish | MEDLINE | ID: mdl-24237428

ABSTRACT

Acinetobacter baumannii is the most important agent of nosocomial infections within the Acinetobacter genus. This gram-negative coccobacillus is intrinsically resistant to many antibiotics used in antimicrobial therapy, and capable of developing resistance including carbapenems. The objective of this study was to develop a multiplex real time polymerase chain reaction (qPCR) kit for OXA subgroups in A.baumannii, and to investigate the distribution of OXA subgroups in A.baumannii strains isolated from geographically different regions of Turkey. A total of 834 A.baumannii clinical isolates collected from different state and university medical centers in 13 provinces (Afyonkarahisar, Ankara, Bolu, Elazig, Erzurum, Isparta, Istanbul, Kahramanmaras, Konya, Sakarya, Van) between 2008-2011, were included in the study. The isolates were identified by conventional methods and automated systems [Vitek2 (bioMerieux, ABD) and Phoenix (BD Diagnostic, MD)]. The susceptibility profiles of the isolates were studied with automated systems and standard disc diffusion method. All samples were subjected to qPCR to detect blaOXA-51-like, blaOXA-23-like and blaOXA-58-like genes. A conventional PCR method was also used to detect blaOXA-24-like gene. The resistance rates observed during the study period were as follows: 96.8% for amoxicillin-clavulanate, 86.8% for ciprofloxacin, 74.7% for gentamicin, 71.7% for amikacin, 73.5% for cefaperozone-sulbactam, 72.1% for imipenem and 73% for meropenem. Six hundred and two (72.2 %) isolates were resistant to both imipenem and meropenem. Colistin was found to be the most effective antibiotic against A.baumannii isolates with 100% susceptibility rate. All isolates were positive for blaOXA-51-like, however blaOXA-24-like gene could not be demonstrated in any isolate. Total positivity rates of blaOXA-23-like and blaOXA-58-like genes were found as 53.7% and 12.5%, respectively, while these rates were 74.4% and 17.3% in carbapenem-resistant isolates, respectively. Twenty-five isolates were positive for both blaOXA-23-like and blaOXA-58-like genes. All of the carbapenem-resistant isolates have OXA type genes with the exception of blaOXA-24-like gene. The positivity rates for blaOXA-23-like and blaOXA-58-like genes varied for each center. In addition, there was a decrease in the frequency of blaOXA-58-like gene, however both blaOXA-23-like gene and carbapenem resistance rates increased during the study period. In conclusion, high rates of resistance to carbapenems were also remarkable but A.baumannii strains keep on sensitivity to colistin. Both blaOXA-23-like and blaOXA-58-like genes were shown to be widespread in carbapenem-resistant A.baumannii clinical isolates. However, blaOXA-23-like gene positive strains were increased throughout the study. Currently, multiplex qPCR is the best way for rapid diagnosis of resistant bacteria for prevention of hospital-acquired infections. The multiplex qPCR kit developed in this study could be useful for rapid diagnosis and identify the frequencies of blaOXA-23-like, blaOXA-51-like and blaOXA-58-like genes in carbapenem-resistant A.baumannii clinical isolates.


Subject(s)
Acinetobacter Infections/microbiology , Acinetobacter baumannii/genetics , Acinetobacter Infections/drug therapy , Acinetobacter Infections/epidemiology , Acinetobacter baumannii/classification , Acinetobacter baumannii/drug effects , Acinetobacter baumannii/isolation & purification , Anti-Bacterial Agents/pharmacology , Carbapenems/pharmacology , Colistin/pharmacology , Drug Resistance, Bacterial/genetics , Humans , Microbial Sensitivity Tests , Multiplex Polymerase Chain Reaction , Reagent Kits, Diagnostic , Real-Time Polymerase Chain Reaction , Turkey/epidemiology
6.
J Med Virol ; 85(6): 1085-9, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23588736

ABSTRACT

The objective of the present study was to investigate the potential association between the presence of BK virus (BKV) DNA and mRNA and renal cell carcinoma and bladder transitional cell carcinoma. The formalin-fixed and paraffin-embedded tissue samples were obtained from 50 cancer patients with renal cell carcinoma, 40 cancer patients with bladder transitional cell carcinoma, 45 control patients with the benign renal pathology, and from another 25 control patients with benign bladder pathology. The samples were subjected to nested PCR for detection of BKV DNA and real-time reverse transcription PCR (real-time RT-PCR) for determining mRNA levels of BKV. The results of the nested PCR indicated that 23 (14.3%) of 160 samples were positive for BKV DNA. The relationship between the cancer and the presence of BKV DNA was significant (P < 0.05). The BKV DNA positivity was significantly associated with the histological diagnosis of renal cell carcinoma (P = 0.03), but not with that of bladder transitional cell carcinoma. The results of real-time RT-PCR showed that the mRNA of BKV VP1 was present in 69.5% of the BKV DNA positive samples. The levels of BKV mRNA were significantly higher in the renal cell cancer samples than in the control samples (P < 0.05). The results of the present study confirm the association between BKV and renal cell cancer. The findings also indicated that the presence of BKV DNA resulted in a fivefold increase in the risk of development of renal cell carcinoma.


Subject(s)
BK Virus/genetics , Carcinoma, Renal Cell/virology , Carcinoma, Transitional Cell/virology , Kidney Neoplasms/virology , Polyomavirus Infections/virology , Tumor Virus Infections/virology , Urinary Bladder Neoplasms/virology , Adult , Aged , Aged, 80 and over , BK Virus/isolation & purification , Carcinoma, Renal Cell/complications , Carcinoma, Renal Cell/pathology , Carcinoma, Transitional Cell/complications , Carcinoma, Transitional Cell/pathology , Case-Control Studies , Female , Humans , Kidney/pathology , Kidney/virology , Kidney Neoplasms/complications , Kidney Neoplasms/pathology , Male , Middle Aged , Polyomavirus Infections/complications , Polyomavirus Infections/pathology , RNA, Messenger/genetics , RNA, Viral/genetics , Tumor Virus Infections/complications , Tumor Virus Infections/pathology , Urinary Bladder/pathology , Urinary Bladder/virology , Urinary Bladder Neoplasms/complications , Urinary Bladder Neoplasms/pathology
7.
Kulak Burun Bogaz Ihtis Derg ; 22(1): 32-7, 2012.
Article in English | MEDLINE | ID: mdl-22339566

ABSTRACT

OBJECTIVES: The aim of study was to determine the presence of some of the herpesviruses including herpes simplex virus (HSV), Epstein-Barr virus (EBV), and cytomegalovirus (CMV) in adenoid tissues of children with adenoid hypertrophy (AH) and chronic adenoiditis (CA) and to investigate the potential role of the herpesviruses in patogenesis of AH and CA. PATIENTS AND METHODS: A total of 72 patients (41 boys, 31 girls; mean age 4 years and 2 months; range 2 to 9 years) who underwent adenoidectomy or adenotonsillectomy (with or without placement of a ventilation tube) in our clinic between October 2007 and May 2008, were included. The patients were divided into two groups, as AH group (n=42) and the CA group (n=30). Adenoid tissues collected from patients in both groups were analyzed by polymerase chain reaction (PCR) for the presence of HSV, EBV and CMV-DNA. RESULTS: The results of the PCR indicated that 33.3% in the AH group and 36.6% in the CA group were herpesvirus DNA positive. Among the herpesviruses studied, HSV-DNA was detected at the highest level (14.2% and 16.6%, respectively) in both groups, although the difference between the groups was not significant. EBV-DNA positiveness was 11.9% and CMV-DNA was 4.7% in the AH group, whereas, EBV-DNA positiveness was 13.3% and CMV-DNA was 6.6% in the CA group. CONCLUSION: Herpesviruses were determined at a high rate in adenoid tissue of children with AH and CA, suggesting that there may be a potential relationship between the presence of herpesviruses and occurrence of AH and CA in children. However, more extensive studies are required to elucidate the role of herpesviruses in the pathogenesis of AH or CA.


Subject(s)
Adenoids/pathology , Adenoids/virology , Herpesviridae Infections/virology , Tonsillitis/virology , Adenoidectomy , Child , Child, Preschool , Chronic Disease , Cytomegalovirus/genetics , Cytomegalovirus/isolation & purification , DNA, Viral/isolation & purification , Female , Herpesviridae Infections/complications , Herpesviridae Infections/pathology , Herpesvirus 4, Human/genetics , Herpesvirus 4, Human/isolation & purification , Humans , Hypertrophy/pathology , Hypertrophy/virology , Male , Middle Ear Ventilation , Polymerase Chain Reaction , Simplexvirus/genetics , Simplexvirus/isolation & purification , Tonsillectomy , Tonsillitis/pathology
8.
Ann Ophthalmol (Skokie) ; 41(2): 98-101, 2009.
Article in English | MEDLINE | ID: mdl-19845225

ABSTRACT

We investigated conjunctival flora changes in vernal conjunctivitis (VC) (n = 30) patients compared to the normal eye (n = 30). Growth was observed in 86.6% of the vernal group, and 80% of the control group specimens. We believe that administering prophylactic treatment would be helpful in VC patients who are to have intraocular surgery to prevent postoperative endophthalmitis.


Subject(s)
Bacteria, Aerobic/isolation & purification , Conjunctiva/microbiology , Conjunctivitis, Allergic/etiology , Adolescent , Child , Colony Count, Microbial , Conjunctivitis, Allergic/diagnosis , Diagnosis, Differential , Eye Infections, Bacterial/diagnosis , Eye Infections, Bacterial/microbiology , Female , Follow-Up Studies , Humans , Male , Retrospective Studies , Risk Factors , Young Adult
9.
Can J Ophthalmol ; 43(4): 476-9, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18711465

ABSTRACT

BACKGROUND: To determine the difference in conjunctival flora in Behçet patients compared with the normal population. METHODS: This study was carried out on a study group of 50 patients in the inactive period of Behçet's disease and a control group of 50 age- and sex-matched healthy subjects with no systemic or ocular disease. A swab was taken from the lower fornix using a sterile swab and inoculated into bloody eosin methylene blue, chocolate, and Sabouraud dextrose agar media. RESULTS: The mean age was 36.04 (SD 2.16) years for the Behçet group and 35.64 (SD 1.96) years for the control group. Bacterial growth was observed in 92% (n = 46) of the Behçet group and 56% (n = 29) of the control group. The Behçet group results were Staphylococcus aureus in 12 (24%), coagulase negative staphylococci (CNS) in 32 (64%), Moraxella spp in 8 (16%), Streptococcus spp in 8 (16%), Bacillus spp in 4 (8%), Neisseria spp in 4 (8%), Candida spp in 3 (6%), and Haemophilus spp in 1 (2%). In the control group, the results were S. aureus in 2 (4%), CNS in 24 (48%), Moraxella spp in 2 (4%), Streptococcus spp in 1 (2%), Bacillus spp in 3 (6%), Neisseria spp in 3 (6%), and Candida spp in 1 (2%). INTERPRETATION: S. aureus, Moraxella spp, and Streptococcus spp colonization was significantly higher in the conjunctival flora of Behçet patients than in that of the control group. A bacterial etiology may be involved in the pathogenesis of Behçet's disease.


Subject(s)
Bacteria/isolation & purification , Behcet Syndrome/microbiology , Conjunctiva/microbiology , Adolescent , Adult , Aged , Bacillus/isolation & purification , Bacterial Typing Techniques , Candida/isolation & purification , Child , Female , Humans , Male , Middle Aged , Moraxella/isolation & purification , Neisseria/isolation & purification , Staphylococcus aureus/isolation & purification , Streptococcus/isolation & purification
10.
Mikrobiyol Bul ; 41(2): 203-9, 2007 Apr.
Article in Turkish | MEDLINE | ID: mdl-17682706

ABSTRACT

The aim of this study was to detect the Mycobacterium species in the sputum samples collected from tuberculosis patients in Elazig province (located in Eastern Anatolia, Turkey), by PCR-RFLP (Polymerase Chain Reaction-Restriction Fragment Length Polymorphism) method. A total of 60 samples from patients (32 male, 28 female) who were diagnosed as tuberculosis by culture positivity at Elazig Tuberculosis Control Dispensary, were included to the study. After DNA extraction and isolation from the samples, gene region encoding for 65 kDa protein of mycobacteria was amplified with specific primers (first step primers: TB1; 5'-GAG ATC GAC TGG AGG ATC C-3' and TB2; 5'-AGC TGC AGC CCA AAG GTG TT- 3', second step primers: TB1 and TB3; 5'-GTG TTG GAC TCC TCG ACG GT-3') by using seminested PCR method. According to hsp65 gene region amplification, 51 (85%) samples yielded positive results, while nine (15%) samples could not be identified. Of 51 samples, 44 (86.3%) were identified as M. tuberculosis complex, four (7.8%) were M.scrofulaceum, two (3.9%) were M. avium and one (1.9%) was M. intracellulare, in the restriction assay by Haelll of the PCR products. In order to identify the species of M. tuberculosis complex, gyrB gene region was amplified in those of 44 samples with specific primers (MTUB-f; 5'-TCG GAC GCG TAT GCG ATA TC-3' and MTUB-r; 5'-ACA TAC AGT TCG GAC TTG CG-3'), and the PCR products were restricted by Rsal and Taql enzymes. In this assay, 34 (77.3%), eight (18.2%), one (2.3%) and one (2.3%) of the 44 M. tuberculosis complex samples were detected as M. tuberculosis, M. bovis, M. microti and M. africanum, respectively. Our data indicated that at least seven different Mycobacterium species were the causative agents of tuberculosis in our region. As a result, researching for species distributions of mycobacteria in all of the parts of Turkey by molecular methods and clarifying their resistance patterns against antituberculous drugs are needed for the effective control of tuberculosis.


Subject(s)
Mycobacterium/isolation & purification , Sputum/microbiology , Tuberculosis/microbiology , DNA Primers , DNA, Bacterial/chemistry , DNA, Bacterial/isolation & purification , Female , Humans , Male , Mycobacterium/classification , Mycobacterium/genetics , Polymerase Chain Reaction/methods , Polymorphism, Restriction Fragment Length , Tuberculosis/epidemiology , Turkey/epidemiology
11.
Parasitol Int ; 56(3): 217-20, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17434795

ABSTRACT

More than half of the world's population is exposed to malaria in approximately 100 countries. Rapid diagnosis and correct treatment of cases are the main objectives of control programs in malaria endemic areas. We have developed a PCR method to determine the presence of plasmodium DNA in blood. The method can also identify the species of the plasmodium by restriction enzyme analysis of the amplified product. We evaluated the performance of this method in the diagnosis of malaria suspected cases in Turkey by comparing to microscopy of the blood smears: blood samples were obtained from 114 patients with malaria symptoms, including fever and/or chills lasting for several days, before starting treatment. Thin and thick blood smears were prepared immediately in the region of specimen collection. After isolation of DNA from blood samples, DNA was amplified by PCR and digested by restriction enzyme AluI. The obtained fragments were analyzed by agarose gel electrophoresis. The number of parasites in the thick and thin smears of the blood samples was evaluated microscopically after staining by Giemsa and results were compared by PCR results. Among 114 plasmodium positive cases detected by microscopy, 100 were also detected by PCR. There were 14 false negatives and no false positive by PCR. Compared to microscopy, the sensitivity, specificity and Positive Predictive Value (PPV) of PCR were determined as 76%, 100% and 100%, respectively.


Subject(s)
Malaria/diagnosis , Malaria/parasitology , Plasmodium/classification , Polymerase Chain Reaction/methods , Animals , DNA, Protozoan/blood , Deoxyribonucleases, Type II Site-Specific/metabolism , Humans , Plasmodium/genetics , Plasmodium/isolation & purification , Plasmodium falciparum/classification , Plasmodium falciparum/genetics , Plasmodium falciparum/isolation & purification , Plasmodium ovale/classification , Plasmodium ovale/genetics , Plasmodium ovale/isolation & purification , Plasmodium vivax/classification , Plasmodium vivax/genetics , Plasmodium vivax/isolation & purification , Predictive Value of Tests , Sensitivity and Specificity , Turkey
12.
Pediatr Int ; 49(1): 36-9, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17250503

ABSTRACT

BACKGROUND: Otitis media with effusion (OME) is a disease that frequently occurs in children. Etiopathogenesis of the diseases has not been completely elucidated. There are limited numbers of studies on the presence of herpesviruses in otitis media cases with OME. The present study was undertaken to determine the rate of some herpesviruses in OME cases of children. METHODS: A total of 92-middle ear fluids were collected from 51 children. The samples were analyzed using polymerase chain reaction (PCR) for detection of herpesviruses including Herpes simplex virus (HSV), cytomegalovirus (CMV), Varicella zoster virus (VZV), and Epstein-Barr virus (EBV). RESULTS: PCR analysis of the 92 samples showed that genomes of EBV in 12 (13.04%), HSV in seven (7.60%), CMV in five (5.43%), and VZV in three (3.26%) were present. Two of these samples were positive for both HSV and EBV genomes. Therefore, 25 (27.17%) of the samples were determined to be infected with any of the herpesviruses tested. CONCLUSIONS: In the present study, herpesviruses were determined at a high rate in middle ear fluids of children with OME. However, the present study is a preliminary study and more extensive studies, especially experimental studies, are required to elucidate the role of herpesviruses in pathogenesis of OME and whether there is a relation between rate of herpesviruses in OME cases, and the reactivation of latent infections.


Subject(s)
Body Fluids/virology , Herpesviridae/isolation & purification , Otitis Media with Effusion/virology , Adolescent , Child , Child, Preschool , Humans , Polymerase Chain Reaction
13.
Ann Trop Paediatr ; 26(1): 25-8, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16494701

ABSTRACT

Parvovirus is a rare cause of acute hepatitis. Two children with non A-E acute hepatitis in whom human parvovirus B19 was detected by PCR are reported.


Subject(s)
Hepatitis, Viral, Human/virology , Parvovirus B19, Human/isolation & purification , Acute Disease , Antibodies, Viral/blood , Antigens, Viral/blood , Child , Hepatitis, Viral, Human/immunology , Humans , Infant , Male
14.
Biol Trace Elem Res ; 106(2): 107-15, 2005 Aug.
Article in English | MEDLINE | ID: mdl-16116242

ABSTRACT

The aim of the present study is to evaluate the status of plasma essential trace elements selenium (Se), zinc (Zn), copper (Cu), and iron (Fe) concentrations and their related acute-phase proteins, ceruloplasmin (Cp), ferritin, transferrin (Tf), and albumin levels in patients with vivax malaria. Plasma Cu and Zn concentrations were determined by atomic absorption spectrometry (AAS). Se concentrations were determined by graphite furnace AAS. Fe, Cp, Tf, and albumin levels were determined by colorimetric methods. Plasma Se, Fe, and albumin levels were found to be significantly lower (p < 0.01, p < 0.001, and p < 0.05, respectively) and Cu, Cp, and ferritin levels and Cu/Zn ratios were significantly higher (p < 0.001, p < 0.001, p < 0.001, and p < 0.05, respectively) in patients when compared with those of healthy subjects. Plasma, Tf, and Zn levels were not found to be significantly different (p > 0.05) in patients and controls. There were positive important correlations between Cu and Cp (r = 0.908, p < 0.001), Zn and albumin (r = 0.633, p < 0.001), and negative correlations between Fe and ferritin content (r = -0.521, p < 0.05) and Fe and Tf (r = -0.616, p < 0.01) in the patients group. Our findings demonstrated that plasma essential trace elements Se, Cu, and Fe change, but these changes might be dependent on acute-phase proteins, which were regulated as a part of defense strategies of the organism, induced by hormonelike substances.


Subject(s)
Acute-Phase Proteins/metabolism , Copper/blood , Iron/blood , Malaria, Vivax/blood , Selenium/blood , Zinc/blood , Adolescent , Adult , Animals , Child , Female , Humans , Male , Plasmodium vivax , Statistics as Topic
15.
BMC Public Health ; 3: 29, 2003 Sep 03.
Article in English | MEDLINE | ID: mdl-12952553

ABSTRACT

BACKGROUND: The design and development of school health programmes will require information at demographic characteristics of schoolchildren and the major health burdens of the school-age group, the opportunities for intervention and the appropriateness of the available infrastructure. This study aims to analyse demographic and parasitic infections status of schoolchildren and sanitary conditions of schools in Sanliurfa province of south-eastern Turkey. METHOD: Three primary schools were randomly selected in the shantytown, apartment and rural districts. A total of 1820 schoolchildren between 7-14 years age were took part to the survey of whom 1120 (61.5%) were boys and 700 (38.4%) were girls. A child form (including child's name, sex, age, school grade and parasitic infections) and school survey form (including condition of water supply, condition of latrines, presence of soaps on the basins and presence of garbage piles around to the schools) were used for demographic, parasitic and sanitary surveys. Stool samples were examined by cellophane thick smear technique for the eggs of intestinal helminths. RESULTS: The demographic survey showed that number of schoolchildren was gradually decreased as their age's increase in shantytown school. The sex ratio was proportional until the second grade, after which the number of females gradually decreased in children in shantytown and rural schools while, in apartment area, schoolchildren was proportionally distributed between age groups and gender even the high-grade students. The prevalence of helminthic infections was %77.1 of the schoolchildren in shantytown, 53.2% in apartment district and 53.1% of rural area. Ascaris lumbricoides was the most prevalent species and followed by Trichuris trichiura, Hymenolepis nana and Taenia species in three schools. Sanitation survey indicated that the tap water was limited in shantytown school, toilet's sanitation was poor, available no soaps on lavatories and garbage piles were accumulated around the schools in shantytown and rural area, while, the school in apartment area was well sanitised. CONCLUSIONS: These results indicated that burden of parasitic infections and poor sanitation conditions constituted public health importance among to the shantytown schoolchildren. School health programmes including deworming and sanitation activities through the health education and improvement of sanitation conditions in the schools have a potential to better health and education for schoolchildren. These programmes also offer the potential to reach significant numbers of population in the shantytown schools with high level of absenteeism.


Subject(s)
Child Welfare/statistics & numerical data , Helminthiasis/epidemiology , Intestinal Diseases, Parasitic/epidemiology , Sanitation , Schools/standards , Adolescent , Animals , Ascaris lumbricoides/isolation & purification , Ascaris lumbricoides/parasitology , Child , Child Welfare/classification , Female , Health Surveys , Helminthiasis/parasitology , Humans , Hymenolepis/isolation & purification , Hymenolepis/parasitology , Intestinal Diseases, Parasitic/etiology , Male , Prevalence , Soaps/supply & distribution , Taenia/isolation & purification , Taenia/parasitology , Toilet Facilities/standards , Trichuris/isolation & purification , Trichuris/parasitology , Turkey/epidemiology , Water Supply/analysis
16.
Mem. Inst. Oswaldo Cruz ; 96(7): 903-909, Oct. 2001. ilus, tab
Article in English | LILACS | ID: lil-298889

ABSTRACT

Soil transmitted helminth (STH) infection are endemic in developing countries. A study was carried out of sewage farms, streams and vegetables to determine the sources and routes of STH infection in Sanliurfa, Turkey. Stool samples from farmhouse inhabitants as well as soil and vegetable samples from the gardens were collected and examined. In addition, water samples from streams and vegetable samples from the city market were collected and examined. One hundred and eighty-seven (59.5 percent) of a total of 314 samples, including 88.4 percent of the stool samples, 60.8 percent of the water samples, 84.4 percent of the soil samples and 14 percent of the vegetable samples, were found to be positive for STH eggs. These results indicate that the water, soil and vegetables are heavily contaminated, and suggest a vicious circle between humans and the environment. Improving environmental sanitation is imperative for the control of soil-transmitted helminthiasis in Sanliurfa


Subject(s)
Animals , Environmental Pollution/analysis , Helminthiasis/transmission , Soil/parasitology , Water/parasitology , Ascaris lumbricoides , Feces/parasitology , Helminthiasis/parasitology , Helminthiasis/prevention & control , Parasite Egg Count , Rural Population , Turkey , Vegetables/parasitology
17.
Mem. Inst. Oswaldo Cruz ; 96(5): 683-686, July 2001. ilus, tab
Article in English | LILACS | ID: lil-289357

ABSTRACT

We compared the diagnostic performance characteristics of newly developed method, the rapid dipstick test, which provides colorimetric determination by developing antibody to the lactate dehydrogenase enzyme of parasites, with conventional standard thick-blood film examination. For the rapid test, OptiMAL commercial kits were used. The results were also evaluated with clinical findings from patients. The parasites were determined by microscopic examination of thick-blood films from 81 patients with vivax malaria from southeastern Anatolia, Turkey. The OptiMAL test results were found to be negative in five patients who were diagnosed clinically and through thick-film testing as having vivax malaria. There was no false positivity observed with the OptiMAL test. We concluded that this rapid malaria test has a lower level of sensitivity than the classical thick-blood-film test for malaria, but that these methods have equal specificity


Subject(s)
Humans , Animals , Hematologic Tests/methods , L-Lactate Dehydrogenase/immunology , Malaria, Vivax/diagnosis , Plasmodium vivax/isolation & purification , L-Lactate Dehydrogenase/blood , Malaria, Vivax/blood , Plasmodium vivax/enzymology , Plasmodium vivax/immunology , Predictive Value of Tests , Sensitivity and Specificity
18.
Mem. Inst. Oswaldo Cruz ; 93(4): 491-4, July-Aug. 1998. ilus, tab
Article in English | LILACS | ID: lil-213328

ABSTRACT

Adenosine deaminase (ADA) activities in sera, lymphocytes and granulocytes in patients with cutaneous leishmaniasis were investigated and compared with control groups. Fifty patients and 50 healthy individuals were studied. The clinical diagnosis was parasitologically confirmed by culture and Giemsa stain. ADA activities were measured by colorimetric method. Serum ADA activities 37.80 ñ 11.90, 18.28 ñ 6.08 IU/L (p<0.0001), lymphocyte specific ADA activities 14.90 ñ 7.42, 8.38 ñ 7.42 U/mg protein (p=0.04), granulocyte specific ADA activities 1.15 ñ 0.73, 1.09 ñ 0.67 U/mg protein (p>0.05) were found in patients and control groups, respectively. ADA activity increases in some infectious diseases were cell mediated immune mechanisms are dominant. In cutaneous leishmaniasis, lymphokine-mediated macrophage activity is the main effector mechanism. Increase in serum and lymphocyte ADA activities in patients with cutaneous leishmaniasis may be dependent on and reflects the increase in phagocytic activity of macrophages and maturation of T-lymphocytes.


Subject(s)
Humans , Adenosine Deaminase , Leishmaniasis, Cutaneous
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