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1.
Cell Mol Life Sci ; 64(10): 1310-6, 2007 May.
Article in English | MEDLINE | ID: mdl-17458497

ABSTRACT

The effects of an imidazoline compound (BL11282) on protein expression in rat pancreatic islets were investigated with a proteomic approach. The compound increases insulin release selectively at high glucose concentrations and is therefore of interest in type 2 diabetes. Whole cell extracts from isolated drug-treated and native pancreatic rat islets were compared after separation by 2-D gel electrophoresis. Differentially expressed proteins were identified by mass spectrometry; 15 proteins were selectively up-regulated and 7 selectively down-regulated in drug-treated islets. Of special interest among the differentially expressed proteins are those involved in protein folding (Hsp60, protein disulfide isomerase, calreticulin), Ca(2+) binding (calgizzarin, calcyclin and annexin I) and metabolism or signalling (pyruvate kinase, alpha enolase and protein kinase C inhibitor 1).


Subject(s)
Imidazoles/pharmacology , Islets of Langerhans/drug effects , Proteome/analysis , Proteomics/methods , Animals , Chromatography, Liquid , Electrophoresis, Gel, Two-Dimensional , Islets of Langerhans/metabolism , Male , Mass Spectrometry , Rats , Rats, Wistar
2.
Cell Mol Life Sci ; 64(4): 479-86, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17279313

ABSTRACT

Proinsulin C-peptide is known to bind specifically to cell membranes and to exert intracellular effects, but whether it is internalized in target cells is unknown. In this study, using confocal microscopy and immunostained or rhodamine-labeled peptide, we show that C-peptide is internalized and localized to the cytosol of Swiss 3T3 and HEK-293 cells. In addition, transport into nuclei was found using the labeled peptide. The internalization was followed at 37 degrees C for up to 1 h, and was reduced at 4 degrees C and after preincubation with pertussis toxin. Hence, it is concluded to occur via an energy-dependent, pertussis toxin-sensitive mechanism and without detectable degradation within the experimental time course. Surface plasmon resonance measurements demonstrated binding of HEK-293 cell extract components to C-peptide, and subsequent elution of bound material revealed the components to be intracellular proteins. The identification of C-peptide cellular internalization, intracellular binding proteins, absence of rapid subsequent C-peptide degradation and apparent nuclear internalization support a maintained activity similar to that of an intracrine peptide hormone. Hence, the data suggest the possibility of one further C-peptide site of action.


Subject(s)
C-Peptide/metabolism , Endocytosis , 3T3 Cells , Animals , Cell Extracts , Endocytosis/drug effects , Flow Cytometry , Humans , Mice , Microscopy, Confocal , Online Systems , Pertussis Toxin/pharmacology , Protein Binding/drug effects , Protein Transport/drug effects , Rhodamines/metabolism , Temperature
3.
Cell Mol Life Sci ; 63(24): 3055-60, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17115117

ABSTRACT

The recently reported influence of proinsulin C-peptide on insulin prompted us to examine structural features of the C-peptide. Four sets of limited pattern similarities towards inter-chain end regions of insulin were noticed, involving secondary structure elements, binding residues and intra- as well as inter-peptide residue similarities. Using surface plasmon resonance, we examined insulin binding to truncated, soluble insulin receptor A and IGF-1 receptor, but C-peptide effects on these bindings were not detectable. Two forms of the insulin receptor, differing in activation of gene transcription with regards to (pre)proinsulin and glucokinase, respectively, were also uninfluenced by C-peptide. We conclude that the pattern similarities, if functional, reflect C-peptide interactions with molecules other than both insulin A and B receptors and IGF-1 receptors. Any such effects are of interest in relation to reported binding interactions between insulin and C-peptide.


Subject(s)
C-Peptide/pharmacology , Insulin/metabolism , Proinsulin/pharmacology , Receptor, Insulin/metabolism , Amino Acid Sequence , Animals , B-Lymphocytes/metabolism , Binding Sites , C-Peptide/genetics , Cell Line , Cricetinae , Glucokinase/genetics , Insulin/genetics , Insulin/pharmacology , Molecular Sequence Data , Proinsulin/chemistry , Protein Isoforms , Receptor, IGF Type 1/metabolism , Sequence Homology, Amino Acid , Signal Transduction , Transcription, Genetic , Transfection
4.
Cell Mol Life Sci ; 63(19-20): 2405-14, 2006 Oct.
Article in English | MEDLINE | ID: mdl-17006628

ABSTRACT

Insulin-like growth factor-binding protein-1 (IGFBP-1) is secreted in a highly phosphorylated form that binds IGF-I with high affinity and is resistant to proteolysis. We have purified IGFBP-1-specific protease activity from the urine of an individual with multiple myeloma. This protease efficiently cleaves both phosphorylated and non-phosphorylated IGFBP-1 at Ile130-Ser131, generating fragments that together have higher association and dissociation rates for IGFs compared with intact IGFBP-1. The proteolytic fraction contained azurocidin, a protease homologue hitherto considered inactive. After cleavage of IGFBP-1, there was a lower affinity, but higher capacity for IGF-I binding, suggesting both N- and C-terminal fragments may interact with ligand independently. There was decreased inhibition of IGF-II-stimulated cell growth and glucose uptake. Alone, proteolysed IGFBP-1 stimulated glucose uptake in muscle. We conclude that specific cleavage of IGFBP-1 at target tissues is important in cellular growth and metabolism and opens novel strategies for targeting IGFBP-1 in treatment of disease.


Subject(s)
Antimicrobial Cationic Peptides/metabolism , Blood Proteins/metabolism , Carrier Proteins/metabolism , Insulin-Like Growth Factor Binding Protein 1/metabolism , Peptide Hydrolases/metabolism , Antimicrobial Cationic Peptides/isolation & purification , Antimicrobial Cationic Peptides/urine , Binding Sites , Blood Proteins/isolation & purification , Blood Proteins/urine , Carrier Proteins/isolation & purification , Carrier Proteins/urine , Cell Line , Chromatography, High Pressure Liquid , Humans , Peptide Hydrolases/isolation & purification , Peptide Hydrolases/urine , Phosphorylation , Protein Isoforms/metabolism , Somatomedins/metabolism
5.
Cell Mol Life Sci ; 63(15): 1805-11, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16845606

ABSTRACT

Using surface plasmon resonance (SPR) and electrospray mass spectrometry (ESI-MS), proinsulin C-peptide was found to influence insulin-insulin interactions. In SPR with chip-bound insulin, C-peptide mixed with analyte insulin increased the binding, while alone C-peptide did not. A control peptide with the same residues in random sequence had little effect. In ESI-MS, C-peptide lowered the presence of insulin hexamer. The data suggest that C-peptide promotes insulin disaggregation. Insulin/insulin oligomer muM dissociation constants were determined. Compatible with these findings, type 1 diabetic patients receiving insulin and C-peptide developed 66% more stimulation of glucose metabolism than when given insulin alone. A role of C-peptide in promoting insulin disaggregation may be important physiologically during exocytosis of pancreatic beta-cell secretory granulae and pharmacologically at insulin injection sites. It is compatible with the normal co-release of C-peptide and insulin and may contribute to the beneficial effect of C-peptide and insulin replacement in type 1 diabetics.


Subject(s)
C-Peptide/metabolism , Diabetes Mellitus, Type 1/drug therapy , Hypoglycemic Agents/metabolism , Insulin/metabolism , Adult , C-Peptide/therapeutic use , Diabetes Mellitus, Type 1/metabolism , Female , Glucose/metabolism , Humans , Hypoglycemic Agents/therapeutic use , Insulin/therapeutic use , Male , Middle Aged , Protein Binding , Spectrometry, Mass, Electrospray Ionization , Surface Plasmon Resonance
6.
Cell Mol Life Sci ; 63(10): 1205-13, 2006 May.
Article in English | MEDLINE | ID: mdl-16685466

ABSTRACT

Human Hep27 was originally isolated from growth-arrested HepG2 cells and identified as a member of the superfamily of short-chain dehydrogenases/reductases (SDR). Its substrate specificity has not been determined, but a cross-species comparison suggests that it occurs in widely divergent species, such as human, Cenorhabditis elegans, Drosophila and Arabidopsis thaliana. In this study, Hep27 was expressed as a His(6) fusion protein, and subjected to a substrate screen, using a compound library of SDR substrates, comprising steroids, retinoids, sugars and carbonyl compounds. Whereas no steroid dehydrogenase or retinoid activity was detected, it was found that Hep27 catalyzed the NADPH-dependent reduction of dicarbonyl compounds, like 3,4-hexanedione and 1-phenyl-1,2-propanedione with similar turnover numbers as DCXR (a mitochondrial dicarbonyl reductase/xylulose reductase). In contrast, Hep27 does not convert sugar substrates like xylulose or threose. Based on its substrate specificity and expression in endothelial tissues, it is suggested that Hep27 functions as a dicarbonyl reductase in enzymatic inactivation of reactive carbonyls, involved in covalent modification of cellular components.


Subject(s)
Alcohol Dehydrogenase/genetics , Alcohol Dehydrogenase/metabolism , Alcohol Oxidoreductases/metabolism , Endothelial Cells/enzymology , NADP/metabolism , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Amino Acid Sequence , Animals , Arabidopsis , Carbonyl Reductase (NADPH) , Cell Line , Cells, Cultured , Drosophila/genetics , Escherichia coli/genetics , Humans , Kinetics , Molecular Sequence Data , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Retinoids/metabolism , Sequence Alignment , Steroids/metabolism , Substrate Specificity
7.
Cell Mol Life Sci ; 62(15): 1772-8, 2005 Aug.
Article in English | MEDLINE | ID: mdl-16003487

ABSTRACT

Proinsulin C-peptide influences a number of physiological parameters in addition to its well-established role in the parent proinsulin molecule. It is of interest as a candidate for future co-replacement therapy with insulin for patients with diabetes mellitus type 1, but specific receptors have not been identified and additional correlation with functional effects is desirable. Based on comparisons of 22 mammalian proinsulin variants, we have constructed analogues for activity studies, choosing phosphorylation of mitogen-activated protein kinases (MAPKs) in Swiss 3T3 fibroblasts for functional measurements. In this manner, we find that effective phosphorylation of MAPKs is promoted by the presence of conserved glutamic acid residues at positions 3, 11 and 27 of C-peptide and by the presence of helix-promoting residues in the N-terminal segment. Previous findings have ascribed functional roles to the C-terminal pentapeptide segment, and all results combined therefore now show the importance of different segments, suggesting that C-peptide interactions are complex or multiple.


Subject(s)
C-Peptide/chemistry , Amino Acid Sequence , Animals , C-Peptide/metabolism , Conserved Sequence , Extracellular Signal-Regulated MAP Kinases/metabolism , Glutamic Acid/chemistry , Mice , Molecular Sequence Data , Phosphorylation , Protein Structure, Secondary , Sequence Alignment , Swiss 3T3 Cells
8.
Cell Mol Life Sci ; 59(7): 1185-9, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12222964

ABSTRACT

Based on the findings that proinsulin C-peptide binds specifically to cell membranes, we investigated the effects of C-peptide and related molecules on the intracellular Ca2+ concentration ([Ca2+]i) in human renal tubular cells using the indicator fura-2/AM. The results show that human C-peptide and its C-terminal pentapeptide (positions 27-31, EGSLQ), but not the des (27-31) C-peptide or randomly scrambled C-peptide, elicit a transient increase in [Ca2+]i. Rat C-peptide and rat C-terminal pentapeptide also induce a [Ca2+]i response in human tubular cells, while a human pentapeptide analogue with Ala at position 1 gives no [Ca2+]i response, and those with Ala at positions 2-5 induce responses with different amplitudes. These results define a species cross-reactivity for C-peptide and demonstrate the importance of Glu at position 1 of the pentapeptide. Preincubation of cells with pertussis toxin abolishes the effect on [Ca2+]i by both C-peptide and the pentapeptide. These results are compatible with previous data on C-peptide binding to cells and activation of Na-,K+ATPase. Combined, all data show that C-peptide is a bioactive peptide and suggest that it elicits changes in [Ca2+]i via G-protein-coupled pathways, giving downstream enzyme effects.


Subject(s)
C-Peptide/analogs & derivatives , C-Peptide/pharmacology , Calcium/metabolism , Kidney Tubules/metabolism , Animals , Cells, Cultured , Cytoplasm/metabolism , Humans , Kidney Tubules/cytology , Kidney Tubules/drug effects , Kinetics , Rats , Species Specificity
9.
Biochem Biophys Res Commun ; 284(1): 94-8, 2001 Jun 01.
Article in English | MEDLINE | ID: mdl-11374876

ABSTRACT

In addition to its established role in proinsulin folding, C-peptide has a function in regulation of cellular activity. The 31-residue peptide influences renal, vascular, and metabolic functions in patients with insulin-dependent diabetes mellitus. Binding to cells has been demonstrated for C-peptide, which can be displaced by its C-terminal pentapeptide. We have now used fluorescence correlation spectroscopy to investigate structural requirements on the pentapeptide part for C-peptide binding. All pentapeptide residues, E(27)GSLQ(31), were individually replaced with Ala and the capacity of the resulting peptides to displace rhodamine-labelled full-length human C-peptide from human renal tubular cell membranes was determined. This showed that Glu27 is essential for displacement, while replacement of Gly28 with Ala has little effect, and replacement of any of the three most C-terminal residues had intermediate effects. Morevover, free Glu displaces full-length C-peptide to about 50%, while free Ala, C-peptide(1-26), and the truncated pentapeptide, corresponding to the tetrapeptide G(28)SLG(31), have no displacing capacity. The peptides EVARQ (corresponding to the rat C-terminal pentapeptide) and ELGGGPGAG (corresponding to positions 11-19 of human C-peptide) do not displace human C-peptide. These results indicate that Glu27 of C-peptide is critically involved in binding to cellular targets.


Subject(s)
C-Peptide/metabolism , Cell Membrane/metabolism , Glutamic Acid/metabolism , Alanine/genetics , Animals , Binding, Competitive/drug effects , Binding, Competitive/physiology , C-Peptide/chemistry , C-Peptide/genetics , Cells, Cultured , Fluorescent Dyes/chemistry , Glutamic Acid/genetics , Humans , Kidney Tubules/cytology , Kidney Tubules/metabolism , Mutagenesis, Site-Directed , Peptide Fragments/genetics , Peptide Fragments/metabolism , Peptide Fragments/pharmacology , Protein Binding/drug effects , Rats , Rhodamines/chemistry , Species Specificity , Structure-Activity Relationship , Swine
10.
Chem Biol Interact ; 130-132(1-3): 491-8, 2001 Jan 30.
Article in English | MEDLINE | ID: mdl-11306070

ABSTRACT

Medium-chain dehydrogenases/reductases (MDR) alcohol dehydrogenases exhibit multiple forms through a number of gene duplications. A crucial duplication was the one leading from the glutathione-dependent formaldehyde dehydrogenase line to the liver alcohol dehydrogenase (ADH) lines of vertebrates, the first duplication of which can now be further positioned at early vertebrate times. Similarly, screening of MDR forms in recently completed eukaryotic genomes of Caenorhabditis elegans and Drosophila melanogaster suggest that the MDR family may constitute a moderately sized protein family centered around a limited number of enzyme activities of five different structural types.


Subject(s)
Alcohol Dehydrogenase/genetics , Alcohol Dehydrogenase/chemistry , Aldehyde Oxidoreductases/chemistry , Aldehyde Oxidoreductases/genetics , Animals , Caenorhabditis elegans/enzymology , Caenorhabditis elegans/genetics , Drosophila melanogaster/enzymology , Drosophila melanogaster/genetics , Gene Duplication , Genome , Phylogeny , Vertebrates
11.
Mol Cell Endocrinol ; 171(1-2): 99-101, 2001 Jan 22.
Article in English | MEDLINE | ID: mdl-11165017

ABSTRACT

Most mammalian hydroxysteroid dehydrogenases known thus far belong to the protein superfamilies of short-chain dehydrogenases/reductases (SDR) and aldo-keto reductases (AKR). Whereas members of the AKR family are soluble, cytoplasmic enzymes, SDR-type hydroxysteroid dehydrogenases are also located to other subcellular compartments, i.e. endoplasmic reticulum, mitochondria or peroxisomes. Differential localization might play an important role in influencing the reaction direction of hydroxy dehydrogenase/oxo reductase pathways by determining the available nucleotide cofactor pool. Targeting signals for different subcellular organelles in human hydroxysteroid dehydrogenases have been identified, however, in several enzymes localization signals remain to be determined.


Subject(s)
Hydroxysteroid Dehydrogenases/analysis , Isoenzymes/analysis , Subcellular Fractions/enzymology , 11-beta-Hydroxysteroid Dehydrogenases , Amino Acid Sequence , Animals , COS Cells , Cell Membrane/enzymology , Endoplasmic Reticulum/enzymology , Green Fluorescent Proteins , Humans , Hydroxysteroid Dehydrogenases/chemistry , Hydroxysteroid Dehydrogenases/genetics , Isoenzymes/chemistry , Isoenzymes/genetics , Luminescent Proteins/genetics , Microscopy, Fluorescence , Mitochondria/enzymology , Molecular Sequence Data , Peptide Fragments/analysis , Peptide Fragments/chemistry , Peroxisomes/enzymology , Recombinant Fusion Proteins/analysis , Sequence Alignment , Transfection
12.
Biochem Biophys Res Commun ; 280(2): 423-7, 2001 Jan 19.
Article in English | MEDLINE | ID: mdl-11162533

ABSTRACT

Proinsulin C-peptide exerts physiological effects on kidney and nerve function, but the mechanisms involved remain incompletely understood. Using fluorescence correlation spectroscopy, we have studied binding of rhodamine-labelled human C-peptide to intact human skin fibroblasts and to detergent-solubilised extracts of fibroblasts, K-562, and IEC-6 cells. Specificity was shown by displacement of rhodamine-labelled human C-peptide with unlabelled human C-peptide. C-peptide was found to bind to the cell membranes of intact fibroblasts with an association constant of 3 x 10(9) M(-1), giving full saturation at about 0.9 nM, close to the physiological C-peptide plasma concentration. Treatment of all investigated cells with the zwitter-ionic detergent Chaps was found to release macromolecules that bind specifically to C-peptide. The binding in Chaps extracts of fibroblasts was sensitive to time but remained reproducible for up to 2 h at room temperature. Lysophosphatidylcholine, Triton X-100, beta-octylglucopyranoside, SDS, or cholate gave extracts with only low or nonspecific binding. It is concluded that C-peptide binding components can be solubilised from cells, and that Chaps appears to be a suitable detergent.


Subject(s)
C-Peptide/metabolism , Detergents/pharmacology , Fibroblasts/drug effects , Fibroblasts/metabolism , Skin , Cell Extracts , Cell Membrane/chemistry , Cell Membrane/drug effects , Cell Membrane/metabolism , Cells, Cultured , Cholic Acids/pharmacology , Fibroblasts/chemistry , Fibroblasts/cytology , Humans , K562 Cells , Protein Binding/drug effects , Recombinant Proteins/metabolism , Reproducibility of Results , Skin/chemistry , Skin/cytology , Skin/drug effects , Skin/metabolism , Solubility/drug effects , Substrate Specificity , Temperature , Time Factors
13.
Cell Mol Life Sci ; 57(2): 337-42, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10766028

ABSTRACT

Proinsulin C-peptide ameliorates renal and autonomic nerve function and increases skeletal muscle blood flow, oxygen uptake and glucose transport in patients with insulin-dependent diabetes mellitus. These effects have in part been ascribed to the stimulatory influence of C-peptide on Na+,K+-ATPase and endothelial nitric oxide synthase. To evaluate the capacity of C-peptide to insert into lipid bilayers and form ion channels, C-peptide secondary structure and membrane interactions were studied with circular dichroism spectroscopy and size exclusion chromatography. C-peptide is shown to lack a stable secondary structure, both when part of proinsulin and when free in aqueous solution, although the N-terminal third of the peptide exhibits an alpha-helical conformation in trifluoroethanol. Moreover, C-peptide remains disordered in the aqueous solvent in the presence of lipid vesicles, regardless of vesicle composition. In conclusion, C-peptide is unlikely to elicit physiological effects through stable conformation-dependent interactions with lipid membranes.


Subject(s)
C-Peptide/chemistry , C-Peptide/metabolism , Liposomes/metabolism , Membrane Lipids/metabolism , Amino Acid Sequence , Animals , Cholesterol/metabolism , Chromatography, Gel , Circular Dichroism , Humans , Hydrogen-Ion Concentration , Liposomes/chemistry , Magnetic Resonance Spectroscopy , Micelles , Molecular Sequence Data , Phosphatidylcholines/metabolism , Phosphatidylserines/metabolism , Protein Structure, Secondary/drug effects , Rats , Solutions , Trifluoroethanol/metabolism , Trifluoroethanol/pharmacology
14.
Eur J Biochem ; 263(2): 305-11, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10406936

ABSTRACT

An ethanol-active medium-chain dehydrogenase/reductase (MDR) alcohol dehydrogenase was isolated and characterized from Escherichia coli. It is distinct from the fermentative alcohol dehydrogenase and the class III MDR alcohol dehydrogenase, both already known in E. coli. Instead, it is reminiscent of the MDR liver enzyme forms found in vertebrates and has a K(m) for ethanol of 0.7 mM, similar to that of the class I enzyme in humans, however, it has a very high k(cat), 4050 min(-1). It is also inhibited by pyrazole (K(i) = 0.2 microM) and 4-methylpyrazole (K(i)= 44 microM), but in a ratio that is the inverse of the inhibition of the human enzyme. The enzyme is even more efficient in the reverse direction of acetaldehyde reduction (K(m) = 30 microM and k(cat) = 9800 min(-1)), suggesting a physiological function like that seen for the fermentative non-MDR alcohol dehydrogenase. Growth parameters in complex media with and without ethanol show no difference. The structure corresponds to one of 12 new alcohol dehydrogenase homologs present as ORFs in the E. coli genome. Together with the previously known E. coli MDR forms (class III alcohol dehydrogenase, threonine dehydrogenase, zeta-crystallin, galactitol-1-phosphate dehydrogenase, sensor protein rspB) there is now known to be a minimum of 17 MDR enzymes coded for by the E. coli genome. The presence of this bacterial MDR ethanol dehydrogenase, with a structure compatible with an origin separate from that of yeast, plant and animal ethanol-active MDR forms, supports the view of repeated duplicatory origins of alcohol dehydrogenases and of functional convergence to ethanol/acetaldehyde activity. Furthermore, this enzyme is ethanol inducible in at least one E. coli strain, K12 TG1, with apparently maximal induction at an enthanol concentration of approximately 17 mM. Although present in several strains under different conditions, inducibility may constitute an explanation for the fairly late characterization of this E. coli gene product.


Subject(s)
Alcohol Dehydrogenase/chemistry , Alcohol Dehydrogenase/classification , Escherichia coli/enzymology , Amino Acid Sequence , Amino Acids/chemistry , Ethanol/metabolism , Humans , Kinetics , Molecular Sequence Data , Phylogeny , Sequence Homology, Amino Acid , Structure-Activity Relationship
17.
Biochemistry ; 35(46): 14561-8, 1996 Nov 19.
Article in English | MEDLINE | ID: mdl-8931553

ABSTRACT

The isozymes of class III alcohol dehydrogenase/glutathione-dependent formaldehyde dehydrogenase from cod were characterized. They exhibited three unexpected properties of general interest. First, these dimeric isozymes, derived from two types of subunit (h and l, for high- and low-activity forms), were recovered from liver preparations in only the homodimeric ll and heterodimeric hl combinations. Dissociation and reassociation of the isolated hl form in vitro also resulted in lower yields of the hh than the ll homodimer, although class III subunits are usually freely associable over wide borders of divergence (human and Drosophila). The h and l primary structures show that both chain types are characteristic of class III enzymes, without large amino acid replacements at positions of known subunit interactions. Hence, the hh dimer partial restriction indicates nontraditional alterations at h-subunit interfaces. The structure provides a possible explanation, in the form of h-chain modifications that may influence the anchoring of a loop at positions of two potentially deamidative beta-aspartyl shifts at distant Asn-Gly structures. Second the ll and hl forms differ in enzymatic properties, having 5-fold different K(m) values for NAD+ at pH 8, different K(m) values for S-(hydroxymethyl)glutathione (10 versus 150 microM), and different specific activities (4.5 versus 41 units/mg), with ll resembling and hl deviating from human and other class III alcohol dehydrogenases. However, functional residues lining substrate and coenzyme pockets in the known conformations of homologous forms are largely identical in the two isozymes [only minor conservative exchanges of Val/Leu116, Val/Leu203, Ile/Val224, and Ile/Val269 (numbering system of the human class I enzyme)], again indicating effects from distantly positioned h-chain replacements. Third, the two isozymes differ a surprising amount in amino acid sequence (18%, the same as the piscine/ human difference), reflecting a remarkably old isozyme duplication or, more probably, discordant accumulation of residue exchanges with greater speed of evolution for one of the subunits (h chain) than is typical for the slowly evolving class III alcohol dehydrogenase.


Subject(s)
Aldehyde Oxidoreductases/chemistry , Isoenzymes/chemistry , Aldehyde Oxidoreductases/metabolism , Amino Acid Sequence , Animals , Binding Sites , Candida , Drosophila , Electrophoresis, Polyacrylamide Gel , Fishes , Glutathione/metabolism , Humans , Hydrogen-Ion Concentration , Isoelectric Focusing , Kinetics , Molecular Sequence Data , Octopodiformes , Pisum sativum , Peromyscus , Protein Conformation , Saccharomyces cerevisiae
18.
Eur J Biochem ; 241(3): 849-57, 1996 Nov 01.
Article in English | MEDLINE | ID: mdl-8944774

ABSTRACT

A glutathione-dependent formaldehyde dehydrogenase (class III alcohol dehydrogenase) has been characterized from Arabidopsis thaliana. This plant enzyme exhibits kinetic and molecular properties in common with the class III forms from mammals, with a K(m) for S-hydroxymethylglutathione of 1.4 microM, an anodic electrophoretic mobility (pI: 5.3-5.6) and a cross-reaction with anti-(rat class III alcohol dehydrogenase) antibodies. The enzyme structure, deduced from the cDNA sequence, fits into the complex system of alcohol dehydrogenases and shows that all life forms share the class III protein type. The corresponding mRNA is 1.4 kb and present in all plant organs; a single copy of the gene is found in the genome. The class III structural variability is different from that of the ethanol-active enzyme types in both vertebrates (class I) and plants (class P), although class P conserves more of the class III properties than class I does. Also the enzymatic properties differ between the two ethanol-active classes. Active-site variability and exchanges at essential residues (Leu/Gly57, Asp/Arg115) may explain the distinct kinetics. These patterns are consistent with two different metabolic roles for the ethanol-active enzymes, a more constant function, reduction of acetaldehyde during hypoxia, for class P, and a more variable function, the detoxication of alcohols and participation in metabolic conversions, for class I. A sequence motif, Pro-Xaa-Ile/Val-Xaa-Gly-His-Glu-Xaa-Xaa-Gly, common to all medium-chain alcohol dehydrogenases is defined.


Subject(s)
Aldehyde Oxidoreductases/chemistry , Aldehyde Oxidoreductases/classification , Arabidopsis Proteins/chemistry , Arabidopsis/enzymology , Glutathione Reductase/chemistry , Alcohol Dehydrogenase/classification , Aldehyde Oxidoreductases/genetics , Aldehyde Oxidoreductases/metabolism , Amino Acid Sequence , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Base Sequence , Binding Sites , Computer Simulation , DNA, Complementary/genetics , Dimerization , Gene Library , Glutathione Reductase/genetics , Glutathione Reductase/metabolism , Models, Molecular , Molecular Sequence Data , Phylogeny , Protein Conformation , RNA, Plant/genetics , Sequence Analysis, DNA , Sequence Homology, Amino Acid
19.
Proc Natl Acad Sci U S A ; 93(11): 5595-9, 1996 May 28.
Article in English | MEDLINE | ID: mdl-8643621

ABSTRACT

A plant class III alcohol dehydrogenase (or glutathione-dependent formaldehyde dehydrogenase) has been characterized. The enzyme is a typical class III member with enzymatic parameters and substrate specificity closely related to those of already established animal forms. Km values with the pea enzyme are 6.5 microM for NAD+, 2 microM for S-hydroxymethylglutathione, and 840 microM for octanol versus 9, 4, and 1200 microM, respectively, with the human enzyme. Structurally, the pea/human class III enzymes are closely related, exhibiting a residue identity of 69% and with only 3 of 23 residues differing among those often considered in substrate and coenzyme binding. In contrast, the corresponding ethanol-active enzymes, the long-known human liver and pea alcohol dehydrogenases, differ more (47% residue identities) and are also in functionally important active site segments, with 12 of the 23 positions exchanged, including no less than 7 at the usually much conserved coenzyme-binding segment. These differences affect functionally important residues that are often class-distinguishing, such as those at positions 48, 51, and 115, where the plant ethanol-active forms resemble class III (Thr, Tyr, and Arg, respectively) rather than the animal ethanol-active class I forms (typically Ser, His, and Asp, respectively). Calculations of phylogenetic trees support the conclusions from functional residues in subgrouping plant ethanol-active dehydrogenases and the animal ethanol-active enzymes (class I) as separate descendants from the class III line. It appears that the classical plant alcohol dehydrogenases (now called class P) have a duplicatory origin separate from that of the animal class I enzymes and therefore a paralogous relationship with functional convergence of their alcohol substrate specificity. Combined, the results establish the conserved nature of class III also in plants, and contribute to the molecular and functional understanding of alcohol dehydrogenases by defining two branches of plant enzymes into the system.


Subject(s)
Alcohol Dehydrogenase/genetics , Aldehyde Oxidoreductases/genetics , Aldehyde Oxidoreductases/metabolism , Phylogeny , Pisum sativum/enzymology , Alcohol Dehydrogenase/metabolism , Aldehyde Oxidoreductases/chemistry , Amino Acid Sequence , Animals , Ethanol/metabolism , Formaldehyde/metabolism , Humans , Kinetics , Molecular Sequence Data , Plants , Sequence Homology, Amino Acid , Substrate Specificity
20.
Eur J Biochem ; 236(2): 563-70, 1996 Mar 01.
Article in English | MEDLINE | ID: mdl-8612630

ABSTRACT

The nature of the isozyme differences in the class-I alcohol dehydrogenase structure from the lizard, Uromastix hardwickii, was determined and related to those in the human and horse enzymes, for which isozyme structures have also been established. The Uromastix isozymes differ much (at a total of 72 positions, 19%) but, in spite of this, have similar properties and were not obtained resolved. Their structures were analyzed in mixture, and the two sub-sets of peptides obtained could be distinguished by evaluation of the recovery ratios within the peptide pairs. The isozymes have class-I activities, with an ethanol dehydrogenase activity of 0.6 U/mg and no formaldehyde dehydrogenase activity, have typical class-I structures, and are composed of N-terminally acetylated 375-residue subunits (a and b). Importantly, variability patterns between the isozymes are reminiscent of those both in the other two lines with isozymes (primates and horse) and in the class distinctions of the enzyme. Hence, the variability pattern since the distant stage of class-I emergence is also visible within the more recent isozyme divergence, illustrating a continuity in the evolution of isozymes to classes (and then to enzymes). The pattern also links the different levels of multiplicity and may suggest an acceptability in common to duplications and mutations, compatible with the emergence of novel functions.


Subject(s)
Alcohol Dehydrogenase/genetics , Isoenzymes/genetics , Lizards/genetics , Amino Acid Sequence , Animals , Binding Sites , Biological Evolution , Humans , Liver/enzymology , Molecular Sequence Data , Molecular Weight , Peptide Mapping , Protein Structure, Tertiary
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