Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 23
Filter
1.
J Pharm Bioallied Sci ; 14(Suppl 1): S802-S807, 2022 Jul.
Article in English | MEDLINE | ID: mdl-36110614

ABSTRACT

Background: The instrumentation technique which produces least amount of apically extruded debris is desirable to use in biomechanical preparation of root canal. Aim: To quantitatively evaluate apically extruded debris during instrumentation with hand K-file, ProTaper Next, and WaveOne. Materials and Methods: Forty-five extracted human single-rooted mandibular premolars with straight, single canal and single apical foramen were selected after radiographic evaluation and divided equally into three groups. Cleaning and shaping was done using hand K-files in step-back technique, ProTaper Next, and WaveOne single-file system. Debris extruded apically was collected into Eppendorf tubes and stored in an incubator at 37°C temperature for 5 days for drying. Weight of dry debris was measured using electronic microbalance with an accuracy of 10-5 g. Statistical Analysis: Student's t-test, with P value < 0.05 is statistically significant. Results: Statistically significant (P < 0.05) amount of debris was extruded by all three instrumentation systems: hand K-file- 1.9220 mg, ProTaper Next- 1.4940 mg, and WaveOne- 0.9940 mg. Least amount of debris produced by WaveOne was statistically significant (P < 0.05) when compared with the other two systems. Conclusion: The WaveOne reciprocating system extruded least amount of debris in comparison to hand K-file and ProTaper Next.

2.
J Pharm Bioallied Sci ; 14(Suppl 1): S893-S896, 2022 Jul.
Article in English | MEDLINE | ID: mdl-36110630

ABSTRACT

Aim of the Study: The objective of this in-vitro study was to assess the screening capabilities of three endodontic sealers, namely the BioRoot RCS, the MTA Fillapex, and Sealapex (a calcium hydroxide-based sealer), and the gutta-percha cone by using a scanning electron microscopy to the dentine walls. The results from the research are presented here. Results: ZOE exhibited more gaps in the sealing materials evaluated with the least dental sealing performance, followed by the cervical third by the MTA Fillapex, the Sealapex, and the BioRoot RCS. The ZOE, followed by Sealapex, MTA Fillapex, and BioRoot RCS, exhibited inadequate dental wall sealing capacity in the middle of the third. The third apical ZOE exhibited more deficiencies in the formation of dental walls, followed by Sealapex, MTA Fillapex, and BioRoot RCS. Conclusion: Under the constraints of the investigation, it can be stated that for the bioceramic sealer, a minimal gap was seen, with RCS of BioRoot superior to Fillapex of MTA. In the middle third, Sealapex was better adapted to the calcium hydroxide-based sealant than the MTA Fillapex sealer. MTA Filllapex had lower gap development than Sealapex in cervical or apical thirds.

3.
J Pharm Bioallied Sci ; 13(Suppl 2): S1149-S1154, 2021 Nov.
Article in English | MEDLINE | ID: mdl-35017947

ABSTRACT

AIM: The aim of this study was to compare the effectiveness of rotary instrumentation over manual instrumentation with ultrasonic irrigation on incidence, duration, and intensity of postendodontic pain (PEP). SUBJECTS AND METHODS: Eighty patients, with asymptomatic irreversible pulpitis in maxillary anterior teeth, were selected and treated with single-visit endodontic treatment. Patients were randomly divided into 2 groups (40 each), Group A (K files using step-back technique) and Group B (ProTaper Next using crown-down technique) along with passive ultrasonic irrigation. Patients were recalled, examined, and asked to fill up questionnaire after 24 h, 48 h, and 7 days. On the basis of response given in the feedback forms, incidence, duration, and intensity of PEP were evaluated. RESULTS: Statistical analysis of the data was carried out using Chi-square test, and level of significance (P < 0.05) was evaluated. More incidence of pain was noticed in Group A when compared with Group B. Significant difference found between two groups (χ 2 = 22.759; P = 0.001). There was also statistically significant difference between two groups at different time intervals. CONCLUSION: Both instrumentation techniques under investigation cause PEP. The incidence of pain was more in manual technique than rotary technique. The duration of pain was higher in manual group than rotary group at different time intervals.

4.
Forensic Sci Int ; 277: 115-121, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28645095

ABSTRACT

BACKGROUND: Assessment of an age of an individual whether living or dead through teeth is one of the most reliable and simple method to calculate age than skeletal remains especially when they are in poor conditions. OBJECTIVES: The study was carried out with aim of (i) to evaluate reliability of dental age assessment through two different methods for adults i.e. tooth coronal index and pulp/tooth ratio using digital panoramic radiographs and (ii) to compare these methods for their accuracy in age determination. MATERIALS AND METHODS: The digital panoramic radiographs of 180 subjects of Chhattisgarh aged 15-70 years were selected for the study. The measurements were performed on the JPEG images of selected panoramic radiographs by using Adobe Acrobat 7.0 professional software. For tooth coronal index (TCI), height of the crown i.e. coronal height (CH) and the height of the coronal pulp cavity i.e. coronal pulp cavity height (CPCH) of mandibular second premolars and first molars was measured in millimeter (mm) and then TCI was calculated for each tooth and calculated age was compared with chronological age. For pulp/tooth ratio, the measurements of pulp chamber height (PCH) and crown root trunk height (CRTH) were performed on the mandibular first and second molar teeth, the pulp chamber crown root trunk height ratios (PCTHR) of selected tooth were calculated. The acquired data were subjected to Pearson correlation test, unpaired t test and Analysis of Variance (ANOVA) analysis. RESULTS: Results suggested that TCI (mandibular first molar r=-0.178), second premolar (r=-0.187) and PCTHR(mandibular first molar r=-0.921, second molar r=-0.901) correlated negatively with chronological age suggesting decrease in size of pulp cavity. Mandibular first molar was found to be most reliable tooth to estimate dental age. CONCLUSION: The study showed that both PCTHR and TCI have negative association with chronological age. PCTHR showed slightly higher negative correlation and proved as a better tool for age estimation than TCI. Statistically significant differences were observed between chronological and calculated age by both methods thus emphasizing the need for future clinical trials.


Subject(s)
Age Determination by Teeth/methods , Dental Pulp Cavity/diagnostic imaging , Radiography, Dental, Digital , Radiography, Panoramic , Tooth Crown/diagnostic imaging , Adolescent , Adult , Aged , Dental Pulp Cavity/growth & development , Female , Humans , Male , Mandible , Middle Aged , Molar , Reproducibility of Results , Tooth Crown/growth & development , Young Adult
5.
J Biomol Struct Dyn ; 35(7): 1582-1598, 2017 May.
Article in English | MEDLINE | ID: mdl-27174123

ABSTRACT

Hereditary hemochromatosis is an iron overburden condition, which is mainly governed by hereditary hemochromatosis factor E (HFE), a member of major histocompatibility complex class I. To understand the effect of pH on the structure and stability of HFE, we have cloned, expressed, and purified the HFE in the bacterial system and performed circular dichroism, fluorescence, and absorbance measurements at a wide pH range (pH 3.0-11.0). We found that HFE remains stable in the pH range 7.5-11.0 and gets completely acid denatured at low pH values. In this work, we also analyzed the contribution of salt bridges to the stability of HFE. We further performed molecular dynamics simulations for 80 ns at different pH values. An excellent agreement was observed between results from biophysical and MD simulation studies. At lower pH, HFE undergoes denaturation and may be driven toward a degradation pathway, such as ubiquitination. Hence, HFE is not available to bind again with transferrin receptor1 to negatively regulate iron homeostasis. Further we postulated that, might be low pH of cancerous cells helps them to meet their high iron requirement.


Subject(s)
Hemochromatosis Protein/chemistry , Molecular Dynamics Simulation , Amino Acid Motifs , Cloning, Molecular , Crystallography, X-Ray , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Genetic Vectors/chemistry , Genetic Vectors/metabolism , Hemochromatosis Protein/genetics , Hemochromatosis Protein/metabolism , Humans , Hydrogen-Ion Concentration , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Denaturation , Protein Interaction Domains and Motifs , Protein Stability , Proteolysis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Thermodynamics
6.
J Mol Graph Model ; 71: 96-103, 2017 01.
Article in English | MEDLINE | ID: mdl-27880887

ABSTRACT

Malaria is a life-threatening disease caused by Plasmodium parasites among which Plasmodium falciparum is the most deadly. Due to the widespread resistance of the current antimalarial drugs, intense research efforts are focused on identification of new and potent antimalarials. We report here, a structure based drug discovery strategy for design of a series of effective and novel triazine based antimalarials. The X-ray structure of P. falciparum methyl transferase (PfPMT) is used as a target as it is unique to the parasite. The triazine molecules designed and synthesized showed low micro-molar activity against malarial parasite cell lines. Molecular dynamics simulations on the PfPMT-inhibitor complex shed light on the inhibition mechanism for further optimization of the lead compounds.


Subject(s)
Drug Discovery , Enzyme Inhibitors/chemistry , Malaria, Falciparum/drug therapy , Triazines/chemistry , Antimalarials/chemistry , Enzyme Inhibitors/therapeutic use , Humans , Malaria, Falciparum/parasitology , Models, Molecular , Plasmodium falciparum/drug effects , Plasmodium falciparum/pathogenicity , Triazines/therapeutic use
7.
J Contemp Dent Pract ; 17(10): 849-852, 2016 Oct 01.
Article in English | MEDLINE | ID: mdl-27794157

ABSTRACT

INTRODUCTION: Endodontic therapy is one of the commonly used procedures for treating the teeth affected by various pathologies. One of the major problems for endodontists despite the advancements in the root canal procedures is the posttreatment endodontic flare-ups. Much debate exists regarding the completion of endodontic therapy in a single sitting or multiple sittings. Hence, we assessed the incidence of endodontic flare-ups in patients undergoing single-sitting root canal therapies. MATERIALS AND METHODS: The present study included 200 patients who underwent single-sitting endodontic therapy. Clinical details and conditions of each and every tooth of every patient were recorded before and after the completion of endodontic therapy. Irrigation during the root canal procedures was done by 2.5% NaOCl solution in most of the cases while others were irrigated with various combinations of ethylenediaminetetraacetic acid (EDTA) and cycloheximide (CHX) solutions. Follow-up records and readings of the patents were noted and were subjected to statistical analysis. RESULTS: Four groups were formed which divided the patients equally on the basis of their age. Out of 50 patients in the age group of 21 to 30 years, only 4 showed posttreatment endodontic flare-ups, while no endodontic flare-up was recorded in patients with age group of 31 to 50 years. Only two male and four females showed flare-ups postoperatively. A nonsignificant correlation was obtained when flare-up cases were compared on the basis of type of irrigation solution used during canal preparation. CONCLUSION: Single-sitting endodontic therapy appears to be a successful procedure with good prognosis and minimal posttreatment flare-up results, even in patients with periapical pathologies. CLINICAL SIGNIFICANCE: Single-sitting root canal procedures can be successfully carried in patients with vital or nonvital pulp tissues and also in patients with periapical lesions.


Subject(s)
Office Visits/statistics & numerical data , Root Canal Therapy , Toothache/etiology , Adolescent , Adult , Anti-Infective Agents , Child , Cycloheximide , Edetic Acid , Female , Humans , Male , Middle Aged , Root Canal Preparation , Sodium Hypochlorite , Young Adult
8.
Bioorg Med Chem ; 24(12): 2777-88, 2016 06 15.
Article in English | MEDLINE | ID: mdl-27157006

ABSTRACT

A series of new cyanopyridine-triazine hybrids were designed, synthesized and screened as multitargeted anti-Alzheimer's agents. These molecules were designed while using computational techniques and were synthesized via a feasible concurrent synthetic route. Inhibition potencies of synthetic compounds 4a-4h against cholinesterases, Aß1-42 disaggregation, oxidative stress, cytotoxicity, and neuroprotection against Aß1-42-induced toxicity of the synthesized compounds were evaluated. Compounds 4d and 4h showed promising inhibitory activity on acetylcholinesterase (AChE) with IC50 values 0.059 and 0.080µM, respectively, along with good inhibition selectivity against AChE over butyrylcholinesterase (BuChE). Molecular modelling studies revealed that these compounds interacted simultaneously with the catalytic active site (CAS) and the peripheral anionic site (PAS) of AChE. The mixed type inhibition of compound 4d further confirmed their dual binding nature in kinetic studies. Furthermore, the results from neuroprotection studies of most potent compounds 4d and 4h indicate that these derivatives can reduce neuronal death induced by H2O2-mediated oxidative stress and Aß1-42 induced cytotoxicity. In addition, in silico analysis of absorption, distribution, metabolism and excretion (ADME) profile of best compounds 4d and 4h revealed that they have drug like properties. Overall, these cyanopyridine-triazine hybrids can be considered as a candidate with potential impact for further pharmacological development in Alzheimer's therapy.


Subject(s)
Alzheimer Disease/drug therapy , Amyloid beta-Peptides/antagonists & inhibitors , Antioxidants/pharmacology , Cholinesterase Inhibitors/pharmacology , Neuroprotective Agents/pharmacology , Peptide Fragments/antagonists & inhibitors , Pyridines/pharmacology , Triazines/pharmacology , Acetylcholinesterase/metabolism , Alzheimer Disease/metabolism , Amyloid beta-Peptides/metabolism , Antioxidants/chemistry , Butyrylcholinesterase/metabolism , Cell Line , Cholinesterase Inhibitors/chemistry , Drug Design , Humans , Molecular Docking Simulation , Molecular Targeted Therapy , Neuroprotective Agents/chemistry , Oxidative Stress/drug effects , Peptide Fragments/metabolism , Pyridines/chemistry , Triazines/chemistry
9.
Eur J Med Chem ; 119: 260-77, 2016 Aug 25.
Article in English | MEDLINE | ID: mdl-27227482

ABSTRACT

In present study a series of triazolopyrimidine-quinoline and cyanopyridine-quinoline hybrids were designed, synthesized and evaluated as acetylcholinesterase inhibitors (AChEIs). Molecular docking and scoring was utilized for the design of inhibitors. The molecules were synthesized via an easily accessible, convergent synthetic route. Three triazolopyrimidine based compounds showed nanomolar activity towards acetylcholinesterase. Among them, Ethyl 6-fluoro-4-(4-(5-methyl-[1,2,4]triazolo[1,5-a]pyrimidin-7-yl)piperazin-1-yl)quinoline-3-carboxylate (10d), strongly inhibited AChE with IC50 value of 42 nM. Furthermore compound 10d was identified as most promising compound with 12 fold selectivity against butyrylcholinesterase (BuChE). This compound displayed a composed multitargeted profile with promising inhibition of self-induced and AChE - induced Aß aggregation and antioxidant activity.


Subject(s)
Alzheimer Disease/drug therapy , Antioxidants/chemical synthesis , Antioxidants/pharmacology , Cholinesterase Inhibitors/chemical synthesis , Cholinesterase Inhibitors/pharmacology , Pyrimidines/chemical synthesis , Pyrimidines/pharmacology , Acetylcholinesterase/chemistry , Acetylcholinesterase/metabolism , Amyloid beta-Peptides/chemistry , Animals , Antioxidants/pharmacokinetics , Antioxidants/therapeutic use , Butyrylcholinesterase/chemistry , Butyrylcholinesterase/metabolism , Cell Line, Tumor , Cell Survival/drug effects , Chemistry Techniques, Synthetic , Cholinesterase Inhibitors/pharmacokinetics , Cholinesterase Inhibitors/therapeutic use , Drug Evaluation, Preclinical , Humans , Kinetics , Molecular Docking Simulation , Peptide Fragments/chemistry , Protein Aggregates/drug effects , Protein Conformation , Pyrimidines/pharmacokinetics , Pyrimidines/therapeutic use
10.
Carbohydr Res ; 429: 87-97, 2016 Jun 24.
Article in English | MEDLINE | ID: mdl-27085905

ABSTRACT

An unusual substituent dictated complementarity in the inhibition of amino-modified five-membered iminocyclitols toward various glycosidases was reported by us. These intriguing results encouraged us to seek a molecular level explanation for the observation that may facilitate the design of specific iminocyclitol inhibitors against glycosidases of choice. We present here a detailed theoretical account that is substantiated with some new experimental investigations on the molecular origins of the differential affinities of iminocyclitols with various glycosidases. The studies involve docking/scoring, molecular dynamics simulations followed by syntheses of a few novel five-membered iminocyclitols and their in vitro binding assays. Directional hydrogen bonds and snug fit of the ligands are implicated as contributory to the observed selectivities. The observed synergy between the computations and experiment is likely to spur further research in the design of novel iminocyclitols with specific inhibitory activities.


Subject(s)
Enzyme Inhibitors/chemistry , Glycoside Hydrolases/chemistry , Piperidines/chemistry , Binding Sites , Enzyme Inhibitors/chemical synthesis , Glycoside Hydrolases/antagonists & inhibitors , Hydrogen Bonding , Ligands , Molecular Docking Simulation , Molecular Dynamics Simulation , Piperidines/chemical synthesis , Protein Binding , Structure-Activity Relationship
11.
Bioorg Med Chem Lett ; 26(3): 782-788, 2016 Feb 01.
Article in English | MEDLINE | ID: mdl-26783179

ABSTRACT

Calmodulin dependent protein kinase IV (CAMKIV) belongs to the serine/threonine protein kinase family and considered as an encouraging target for the development of novel anticancer agents. The interaction and binding behavior of three designed inhibitors of human CAMKIV, containing pyrimidine scaffold, was monitored by in vitro fluorescence titration and molecular docking calculations under physiological condition. In silico docking studies were performed to screen several compounds containing pyrimidine scaffold against CAMKIV. Molecular docking calculation predicted the binding of these ligands in active-site cavity of the CAMKIV structure correlating such interactions with a probable inhibition mechanism. Finally, three active pyrimidine substituted compounds (molecules 1-3) have been successfully synthesized and characterized by (1)H and (13)C NMR. Molecule 3 is showing very high binding-affinity for the CAMKIV, with a binding constant of 2.2×10(8), M(-1) (±0.20). All three compounds are nontoxic to HEK293 cells up to 50 µM. The cell proliferation inhibition study showed that the molecule 3 has lowest IC50 value (46±1.08 µM). The theoretical and experimental observations are significantly correlated. This study reveals some important observations to generate an improved pyrimidine based compound that holds promise as a therapeutic agent for the treatment of cancer and neurodegenerative diseases.


Subject(s)
Calcium-Calmodulin-Dependent Protein Kinase Type 4/antagonists & inhibitors , Drug Design , Protein Kinase Inhibitors/chemistry , Pyrimidines/chemistry , Binding Sites , Calcium-Calmodulin-Dependent Protein Kinase Type 4/metabolism , Cell Line , Cell Proliferation/drug effects , HEK293 Cells , Humans , Molecular Docking Simulation , Protein Kinase Inhibitors/metabolism , Protein Kinase Inhibitors/pharmacology , Protein Structure, Tertiary , Pyrimidines/metabolism , Pyrimidines/pharmacology , Spectrometry, Fluorescence , Thermodynamics
12.
J Biomol Struct Dyn ; 34(3): 572-84, 2016.
Article in English | MEDLINE | ID: mdl-25929263

ABSTRACT

Calcium-calmodulin-dependent protein kinase IV (CAMK4) plays significant role in the regulation of calcium-dependent gene expression, and thus, it is involved in varieties of cellular functions such as cell signaling and neuronal survival. On the other hand, curcumin, a naturally occurring yellow bioactive component of turmeric possesses wide spectrum of biological actions, and it is widely used to treat atherosclerosis, diabetes, cancer, and inflammation. It also acts as an antioxidant. Here, we studied the interaction of curcumin with human CAMK4 at pH 7.4 using molecular docking, molecular dynamics (MD) simulations, fluorescence binding, and surface plasmon resonance (SPR) methods. We performed MD simulations for both neutral and anionic forms of CAMK4-curcumin complexes for a reasonably long time (150 ns) to see the overall stability of the protein-ligand complex. Molecular docking studies revealed that the curcumin binds in the large hydrophobic cavity of kinase domain of CAMK4 through several hydrophobic and hydrogen-bonded interactions. Additionally, MD simulations studies contributed in understanding the stability of protein-ligand complex system in aqueous solution and conformational changes in the CAMK4 upon binding of curcumin. A significant increase in the fluorescence intensity at 495 nm was observed (λexc = 425 nm), suggesting a strong interaction of curcumin to the CAMK4. A high binding affinity (KD = 3.7 × 10(-8) ± .03 M) of curcumin for the CAMK4 was measured by SPR further indicating curcumin as a potential ligand for the CAMK4. This study will provide insights into designing a new inspired curcumin derivatives as therapeutic agents against many life-threatening diseases.


Subject(s)
Calcium-Calmodulin-Dependent Protein Kinase Type 4/chemistry , Curcumin/chemistry , Molecular Docking Simulation , Molecular Dynamics Simulation , Binding Sites , Calcium-Calmodulin-Dependent Protein Kinase Type 4/metabolism , Catalytic Domain , Curcumin/metabolism , Humans , Hydrogen Bonding , Ligands , Molecular Conformation , Protein Binding , Protein Stability , Thermodynamics
13.
Chem Commun (Camb) ; 50(89): 13797-800, 2014 Nov 18.
Article in English | MEDLINE | ID: mdl-25252857

ABSTRACT

A series of designer lipidated pseudopeptidic triazolophanes was synthesized using a copper-catalyzed azide-alkyne cycloaddition reaction. These 32-membered cyclophanes form sturdy vesicles and pot-like supramolecular structures, as demonstrated by ultramicroscopic studies.


Subject(s)
Alkynes/chemistry , Azides/chemistry , Copper/chemistry , Triazoles/chemistry , Click Chemistry , Cycloaddition Reaction , Lipids/chemistry , Serine/chemistry
14.
Chem Commun (Camb) ; 49(93): 10980-2, 2013 Dec 04.
Article in English | MEDLINE | ID: mdl-24132146

ABSTRACT

We designed and synthesized bispidine-anchored peptides and showed that these peptides as small as (containing four chiral α-amino acid residues) adopt a right handed helical conformation. Bispidine anchored linear peptide adopts a helical conformation in solution and in the solid state.


Subject(s)
Bridged Bicyclo Compounds, Heterocyclic/chemistry , Peptides/chemistry , Circular Dichroism , Crystallography, X-Ray , Hydrogen Bonding , Peptides/chemical synthesis , Proline/chemistry , Protein Structure, Secondary , Stereoisomerism
15.
Sci Rep ; 3: 2513, 2013.
Article in English | MEDLINE | ID: mdl-23985481

ABSTRACT

Artemisinin constitutes the frontline treatment to aid rapid clearance of parasitaemia and quick resolution of malarial symptoms. However, the widespread promiscuity about its mechanism of action is baffling. There is no consensus about the biochemical target of artemisinin but recent studies implicate haem and PfATP6 (a calcium pump). We investigated the role of iron and artemisinin on PfATP6, in search of a plausible mechanism of action, via density functional theory calculations, docking and molecular dynamics simulations. Results suggest that artemisinin gets activated by iron which in turn inhibits PfATP6 by closing the phosphorylation, nucleotide binding and actuator domains leading to loss of function of PfATP6 of the parasite and its death. The mechanism elucidated here should help in the design of novel antimalarials.


Subject(s)
Antimalarials/chemistry , Artemisinins/chemistry , Antimalarials/pharmacology , Artemisinins/pharmacology , Calcium/chemistry , Calcium/metabolism , Calcium-Transporting ATPases/chemistry , Calcium-Transporting ATPases/metabolism , Iron/chemistry , Iron/metabolism , Molecular Conformation , Molecular Docking Simulation , Molecular Dynamics Simulation , Plasmodium falciparum/drug effects , Plasmodium falciparum/metabolism , Protein Binding , Protein Interaction Domains and Motifs , Protein Interaction Maps
16.
PLoS One ; 7(1): e30890, 2012.
Article in English | MEDLINE | ID: mdl-22303466

ABSTRACT

Cancer is largely marked by genetic instability. Specific inhibition of individual proteins or signalling pathways that regulate genetic stability during cell division thus hold a great potential for cancer therapy. The Aurora A kinase is a Ser/Thr kinase that plays a critical role during mitosis and cytokinesis and is found upregulated in several cancer types. It is functionally regulated by its interactions with TPX2, a candidate oncogene. Aurora A inhibitors have been proposed as anticancer drugs that work by blocking its ATP binding site. This site is common to other kinases and hence these inhibitors lack specificity for Aurora A inhibition in particular, thus advocating the need of some alternative inhibition route. Previously, we identified TPX2 as a cellular target for withanone that selectively kill cancer cells. By computational approach, we found here that withanone binds to TPX2-Aurora A complex. In experiment, withanone treatment to cancer cells indeed resulted in dissociation of TPX2-Aurora A complex and disruption of mitotic spindle apparatus proposing this as a mechanism of the anticancer activity of withanone. From docking analysis, non-formation/disruption of the active TPX2-Aurora A association complex could be discerned. Our MD simulation results suggesting the thermodynamic and structural stability of TPX2-Aurora A in complex with withanone further substantiates the binding. We report a computational rationale of the ability of naturally occurring withanone to alter the kinase signalling pathway in an ATP-independent manner and experimental evidence in which withanone cause inactivation of the TPX2-Aurora A complex. The study demonstrated that TPX2-Aurora A complex is a target of withanone, a potential natural anticancer drug.


Subject(s)
Antineoplastic Agents/pharmacology , Cell Cycle Proteins/metabolism , Microtubule-Associated Proteins/metabolism , Molecular Dynamics Simulation , Nuclear Proteins/metabolism , Protein Serine-Threonine Kinases/metabolism , Triterpenes/pharmacology , Withania/chemistry , Antineoplastic Agents/chemistry , Aurora Kinases , Biological Assay , Cell Cycle Proteins/chemistry , Cell Cycle Proteins/genetics , Cell Line, Tumor , Cluster Analysis , Drug Screening Assays, Antitumor , Female , Gene Expression Regulation, Enzymologic/drug effects , Humans , Microtubule-Associated Proteins/chemistry , Microtubule-Associated Proteins/genetics , Nuclear Proteins/chemistry , Nuclear Proteins/genetics , Plant Extracts , Protein Serine-Threonine Kinases/chemistry , Protein Serine-Threonine Kinases/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism , Reproducibility of Results , Reverse Transcriptase Polymerase Chain Reaction , Triterpenes/chemistry , Withanolides
17.
J Biomol Struct Dyn ; 29(4): 651-62, 2012.
Article in English | MEDLINE | ID: mdl-22208270

ABSTRACT

Alzheimer's disease (AD), a neurodegenerative disorder, is the most common cause of dementia. So far only five drugs have been approved by US FDA that temporarily slow worsening of symptoms for about six to twelve months. The limited number of therapeutic options for AD drives the exploration of new drugs. Enhancement of the central cholinergic function by the inhibition of acetylcholinesterase is a prominent clinically effective approach for the treatment of AD. Recently withanolide A, a secondary metabolite from the ayurvedic plant Withania somnifera has shown substantial neuro-protective ability. The present study is an attempt to elucidate the cholinesterase inhibition potential of withanolide A along with the associated binding mechanism. Our docking simulation results predict high binding affinity of the ligand to the receptor. Further, long de novo simulations for 10 ns suggest that ligand interaction with the residues Thr78, Trp81, Ser120 and His442 of human acetylcholinesterase, all of which fall under one or other of the active sites/subsites, could be critical for its inhibitory activity. The study provides evidence for consideration of withanolide A as a valuable small ligand molecule in treatment and prevention of AD associated pathology. The present information could be of high value for computational screening of AD drugs with low toxicity to normal cells. Accurate knowledge of the 3D structure of human acetylcholinesterase would further enhance the potential of such analysis in understanding the molecular interaction basis between ligand and receptor.


Subject(s)
Acetylcholinesterase , Withania , Acetylcholinesterase/chemistry , Alzheimer Disease/drug therapy , Cholinesterase Inhibitors/chemistry , Humans , Ligands , Neurodegenerative Diseases
18.
Int J Biochem Cell Biol ; 44(3): 496-504, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22155302

ABSTRACT

Mortalin binds to p53 tumor suppressor protein and sequesters it in the cytoplasm. This results in an inhibition of the transcriptional activation and control of centrosome duplication functions of p53, thus contributing to human carcinogenesis. Abrogation of mortalin-p53 interaction and reactivation of p53 function could be a valid proposition for cancer therapy. In the present study, we first investigated in silico the interaction of withanone, a withanolide with anticancer activity, with mortalin. We found that withanone could bind to mortalin in a region, earlier predicted critical for binding to p53. Cationic rhodacyanine dye, MKT-077 has also shown to bind the same region and kill cancer cells selectively. We report the molecular dynamic simulations revealing the thermodynamic and structural stability of the withanone-mortalin complexes. We also demonstrate the experimental evidence of abrogation of mortalin-p53 complex by withanone resulting in nuclear translocation and functional reactivation of p53 in human cancer cells. The present study establishes a molecular interaction basis that could be used for screening and development of anticancer drugs with low toxicity to normal cells. Accurate knowledge of the 3D structure of mortalin would further enhance the potential of such analyses to understand the molecular basis of mortalin biology and mortalin based cancer therapy.


Subject(s)
Cell Nucleus/metabolism , HSP70 Heat-Shock Proteins/metabolism , Neoplasms/drug therapy , Triterpenes/pharmacology , Tumor Suppressor Protein p53/metabolism , Active Transport, Cell Nucleus/drug effects , Computational Biology , Drug Screening Assays, Antitumor , Humans , Neoplasms/metabolism , Neoplasms/pathology , Protein Binding/drug effects , Withania , Withanolides
19.
BMC Bioinformatics ; 12 Suppl 1: S30, 2011 Feb 15.
Article in English | MEDLINE | ID: mdl-21342561

ABSTRACT

BACKGROUND: HSPs (Heat shock proteins) are highly conserved ubiquitous proteins among species which are involved in maintaining appropriate folding and conformation of other proteins and are thus referred to as molecular chaperones. Hsp90 (Heat-shock protein 90 kDa) is one of a group of molecular chaperones responsible for managing protein folding and quality control in cell environment. However it is also involved in the maturation and stabilization of a wide range of oncogenic client proteins which are crucial for oncogenesis and malignant progression. Hsp90 requires a series of co-chaperones to assemble into a super-chaperone complex for its function. These co-chaperones bind and leave the complex at various stages to regulate the chaperoning process. Arresting the chaperone cycle at these stages by targeting different co-chaperone/Hsp90 interactions seems to be quite a viable alternative and is likely to achieve similar consequences as that of Hsp90 direct inhibition with added favors of high specificity and reduced side effect profile. The study conducted here is an attempt to explore the potential of Withania somnifera's major constituent WA (Withaferin A) in attenuating the Hsp90/Cdc37 chaperone/co-chaperone interactions for enhanced tumor arresting activity and to elucidate the underlying mode of action using computational approaches. RESULTS: Formation of active Hsp90/Cdc37 complex is one of the essential steps for facilitation of chaperone client interaction, non-assembly of which can lead to prevention of the chaperone-client association resulting in apoptosis of tumor cells. From our flexible docking analysis of WA into active Hsp90/Cdc37 complex in which key interfacing residues of the complex were kept flexible, disruption of the active association complex can be discerned. While docking of WA into segregated Hsp90 leaves the interface residues untouched. Thus the molecular docking analysis of WA into Hsp90 and active Hsp90/Cdc37 complex conducted in this study provides significant evidence in support of the proposed mechanism of chaperone assembly suppression by inhibition or disruption of active Hsp90/Cdc37 complex formation being accounted by non-assembly of the catalytically active Hsp90/Cdc37 complex. Results from the molecular dynamics simulations in water show that the trajectories of the protein complexed with ligand WA are stable over a considerably long time period of 4 ns, with the energies of the complex being lowered in comparison to the un-docked association complex, suggesting the thermodynamic stability of WA complexed Hsp90/Cdc37. CONCLUSIONS: The molecular chaperone Hsp90 has been a promising target for cancer therapy. Cancer is a disease marked by genetic instability. Thus specific inhibition of individual proteins or signalling pathways holds a great potential for subversion of this genetic plasticity of cancers. This study is a step forward in this direction. Our computational analysis provided a rationalization to the ability of naturally occurring WA to alter the chaperone signalling pathway. The large value of binding energy involved in binding of WA to the active Hsp90/Cdc37 complex consolidates the thermodynamic stability of the binding. Our docking results obtained substantiate the hypothesis that WA has the potential to inhibit the association of chaperone (Hsp90) to its co-chaperone (Cdc37) by disrupting the stability of attachment of Hsp90 to Cdc37. Conclusively our results strongly suggest that withaferin A is a potent anticancer agent as ascertained by its potent Hsp90-client modulating capability.


Subject(s)
Cell Cycle Proteins/chemistry , Chaperonins/chemistry , HSP90 Heat-Shock Proteins/chemistry , Withanolides/pharmacology , Algorithms , Antineoplastic Agents, Phytogenic/pharmacology , Computational Biology/methods , Ligands , Molecular Dynamics Simulation , Neoplasms/drug therapy , Protein Binding , Protein Interaction Mapping
20.
Biochem Biophys Res Commun ; 404(1): 498-503, 2011 Jan 07.
Article in English | MEDLINE | ID: mdl-21144839

ABSTRACT

The chaperone Hsp90 is involved in regulating the stability and activation state of more than 200 'client' proteins and takes part in the cancer diseased states. The major clientele-protein kinases depend on Hsp90 for their proper folding and functioning. Cdc37, a kinase targeting co-chaperone of Hsp90, mediates the interactions between Hsp90 and protein kinases. Targeting of Cdc37 has the prospect of delivering predominantly kinase-selective molecular responses as compared to the current pharmacologic Hsp90 inhibitors. The present work reports a bio-computational study carried out with the aim of exploring the dual inhibition of Hsp90/Cdc37 chaperone/co-chaperone association complex by the naturally occurring drug candidates withaferin A and 17-DMAG along with their possible modes of action. Our molecular docking studies reveal that withaferin A in combination with 17-DMAG can act as potent chaperone system inhibitors. The structural and thermodynamic stability of the ligands' bound complex was also observed from molecular dynamics simulations in water. Our results suggest a novel tumor suppressive action mechanism of herbal ligands which can be looked forward for further clinical investigations for possible anticancer drug formulations.


Subject(s)
Antineoplastic Agents/pharmacology , Benzoquinones/pharmacology , Cell Cycle Proteins/antagonists & inhibitors , Chaperonins/antagonists & inhibitors , HSP90 Heat-Shock Proteins/antagonists & inhibitors , Lactams, Macrocyclic/pharmacology , Molecular Chaperones/antagonists & inhibitors , Molecular Dynamics Simulation , Neoplasms/metabolism , Withanolides/pharmacology , Benzoquinones/chemistry , Cell Cycle Proteins/chemistry , Cell Cycle Proteins/metabolism , Chaperonins/chemistry , Chaperonins/metabolism , HSP90 Heat-Shock Proteins/chemistry , HSP90 Heat-Shock Proteins/metabolism , Humans , Lactams, Macrocyclic/chemistry , Ligands , Molecular Chaperones/metabolism , Neoplasms/pathology , Protein Structure, Tertiary , Thermodynamics , Withanolides/chemistry
SELECTION OF CITATIONS
SEARCH DETAIL
...