Projected habitat preferences of commercial fish under different scenarios of climate change.

The challenges of commercial species with the threats of climate change make it necessary to predict the changes in the distributional shifts and habitat preferences of the species under possible future scenarios. We aim to demonstrate how future climatic changes will affect the habitat suitability of three species of commercial fish using the predictive technique MaxEnt. The dataset used to extract geographical records included OBIS (54%), GBIF (1%), and literature (45%). The output of the model indicated accurate projections of MaxEnt (AUC above 0.9). Temperature was the main descriptor responsible for the main effects on the distribution of commercial fish. With increasing RCP from 2.5 to 8.5, the species would prefer saltier, higher temperatures and deeper waters in the future. We observed different percentages of suitable habitats between species during RCPs showing distinct sensitivity of each fish in facing climate changes. Negative effects from climate change on the distribution patterns of commercial fish were predicted to lead to varying degrees of reduction and changes of suitable habitats and movement of species towards higher latitudes. The finding emphasizes to implement adaptive management measures to preserve the stocks of these commercial fish considering that the intensification of the effects of climate change on subtropical areas and overexploited species is predicted.

Introducing bio-indicator fish of the Persian Gulf based on health risk assessment of 27 commercial species.

BACKGROUND: The increasing consumption of seafood may bring health risks. It will be especially important for the people living along the coasts who are highly dependent on seafood for food and income. METHODS: In this research, a comprehensive health risk assessment was performed on 27 species of high-consumption commercial fish sampled from stations located in Hormozgan province within the Northeast Persian Gulf. Concentrations of trace metals and their health risk were investigated. RESULTS: Spatial distribution of trace metals in commercial fish showed central stations including Kong and Greater Tonb have higher concentrations of all trace metals except Pb. Some metals showed a significant correlation between concentrations. Our finding indicated the average concentration of all trace metals except Ni in all species was below the concentrations proposed by WHO/FAO/USEPA. EDI for all metals in all species in both adult and child age groups was lower than its RfD (oral reference dose of trace metal) showing the daily consumption of these fish does not pose any health risk and implicates seafood consumption guidelines or policies. Values of THQ for each metal and HI for all metals were lower than 1 in all commercial fish indicating the lack of non-cancerous health risk through the long-term consumption of these fish. The research found potential health risks associated with the consumption of these fish, specifically related to the metals Cr, Ni, and Cd. CONCLUSION: In total, health risk indices proposed eight fish as bio-indicator species of the Persian Gulf. The findings emphasize the risk management of commercial fish consumption, especially bio-indicator species, in Hormozgan province, the Northeast Persian Gulf.

Predicting present spatial distribution and habitat preferences of commercial fishes using a maximum entropy approach.

The knowledge of the geographical distribution and habitat preferences of marine species is the key to protecting marine ecosystems. Modeling the distribution of marine species through environmental variables is an essential step to understanding and reducing climate change effects on marine biodiversity and related human populations. In this study, the present distributions of commercial fishes including Acanthopagrus latus, Planiliza klunzingeri, and Pomadasys kaakan were modeled using the maximum entropy (MaxEnt) modeling technique and a set of 22 environmental variables. In total, 1531 geographical records belonging to three species were extracted from online databases Ocean Biodiversity Information System (OBIS, 829 records, 54%), Global Biodiversity Information Facility (GBIF, 17 records, 1%), and literature (685 records, 45%) during September to December 2022. The findings showed the values of area under the receiver operating characteristic (ROC) curve (AUC) above 0.99 for all species indicating the high performance of this technique to reflect the actual distribution of species. Environmental factors such as depth (19.68%), sea surface temperature (SST) (19.40%), and wave height (20.71%) were the strongest environmental predictors determining the present distribution and habitat preferences of the three commercial fish species. The Persian Gulf, Iranian coasts of the Sea of Oman, North Arabian Sea, North-East areas of the Indian Ocean, and North coasts of Australia are among the areas with ideal environmental conditions for the species. For all species, the percentage of habitats with high suitability (13.35%) was higher compared to habitats with low suitability (6.56%). However, a high percentage of species occurrence habitats had unsuitable conditions (68.58%) showing the vulnerability of these commercial fishes. Significant management strategies are needed to protect preferred habitats to minimize the effect of fishery and climate change on the population stocks of these commercial fishes.

Health risk assessment of commercial fish and shrimp from the North Persian Gulf.

BACKGROUND: Bioaccumulation of trace metals in the food web demands continuous monitoring of seafood safety. Here, the food safety of commercial fish bluespot mullet Crenimugil seheli, deep flounder Pseudorhombus elevates, and Jinga shrimp Metapenaeus affinis was assessed from commercial and industrial region of the West Bandar Abbas, the North Persian Gulf, for the first time. METHODS: For this purpose, concentrations of trace metals Ni, Zn, Cu, Cr, Cd, and Pb, and their health risks were investigated. RESULTS: Results showed the average concentration of all trace metals in all species was below concentrations proposed by WHO/FAO/USEPA. The finding on risk assessment of three species indicated three species are safe for daily consumption. Long-term consumption of three species would not pose potential non-carcinogenic health risk. However, it would result in carcinogenic effects from the ingestion of trace metals Ni, Cr, and Cd. CONCLUSIONS: The data emphasizes the need for the continuous monitoring in this industrial region in the future to manage and control pollutant sources and to ensure the quality of seafood.

Food safety of the green tiger shrimp Penaeus semisulcatus from the Persian Gulf.

Seafood is a rich source of essential compounds for human health, but the consumption of aquatic products that are exposed to environmental pollutants, especially trace metals, comes with risk. Therefore, in this study, the levels of nickel, zinc, and lead in the muscle of shrimp Penaeus semisulcatus caught from the north of the Persian Gulf as a polluted environment were measured, and the health risks were assessed. The results showed that the level of Zn (300.88 ± 2.76 µg/g) in the muscle of shrimp was higher than Ni (6.82 ± 0.10) and Pb (1.10 ± 0.09 µg/g), and the amount of accumulation of all three metals is higher than the allowable limit proposed by the FAO/WHO. According to values of estimated daily intake (EDI) and target hazard quotient (THQ), the consumption of shrimp has no or minimal risk for health. However, the target cancer risk (TR) of Ni (adult, 0.00294; child, 0.00196) indicated that Ni accumulation is associated with carcinogenic risks. These findings may be helpful in the proper management of seafood quality and public health in the Persian Gulf.

Emerging trends in environmental and industrial applications of marine carbonic anhydrase: a review.

Biocatalytic conversion of greenhouse gases such as carbon dioxide into commercial products is one of the promising key approaches to solve the problem of climate change. Microbial enzymes, including carbonic anhydrase, NAD-dependent formate dehydrogenase, ribulose bisphosphate carboxylase, and methane monooxygenase, have been exploited to convert atmospheric gases into industrial products. Carbonic anhydrases are Zn2+-dependent metalloenzymes that catalyze the reversible conversion of CO2 into bicarbonate. They are widespread in bacteria, algae, plants, and higher organisms. In higher organisms, they regulate the physiological pH and contribute to CO2 transport in the blood. In plants, algae, and photosynthetic bacteria carbonic anhydrases are involved in photosynthesis. Converting CO2 into bicarbonate by carbonic anhydrases can solidify gaseous CO2, thereby reducing global warming due to the burning of fossil fuels. This review discusses the three-dimensional structures of carbonic anhydrases, their physiological role in marine life, their catalytic mechanism, the types of inhibitors, and their medicine and industry applications.

Bioactive Carbohydrate Polymers-Between Myth and Reality.

Polysaccharides are complex macromolecules long regarded as energetic storage resources or as components of plant and fungal cell walls. They have also been described as plant mucilages or microbial exopolysaccharides. The development of glycosciences has led to a partial and difficult deciphering of their other biological functions in living organisms. The objectives of glycobiochemistry and glycobiology are currently to correlate some structural features of polysaccharides with some biological responses in the producing organisms or in another one. In this context, the literature focusing on bioactive polysaccharides has increased exponentially during the last two decades, being sometimes very optimistic for some new applications of bioactive polysaccharides, notably in the medical field. Therefore, this review aims to examine bioactive polysaccharide, taking a critical look of the different biological activities reported by authors and the reality of the market. It focuses also on the chemical, biochemical, enzymatic, and physical modifications of these biopolymers to optimize their potential as bioactive agents.

Tracing the heavy metals zinc, lead and nickel in banana shrimp (Penaeus merguiensis) from the Persian Gulf and human health risk assessment.

Seafood has long been considered a unique source of nutrition. However, increasing trends in consumption of marine products must be considered, especially in potentially polluted environments such as the Persian Gulf. This study was undertaken to analyse the level of heavy metal contamination of nickel (Ni), zinc (Zn), and lead (Pb) in shrimp (Penaeus merguiensis) captured from the northern Persian Gulf. The concentration of heavy metals in the muscle of shrimp followed the order Zn > Ni > Pb. The content of Zn and Ni was higher than recommended standard limits by the FAO/WHO. The combined impact of all metals was lower than the acceptable limit of 1 in shrimp. The carcinogenic risk for Ni was higher than the unacceptable value. In total, our finding indicated no potential health risk from the daily consumption of this species. However, long-term consumption of shrimp can pose a risk of carcinogenic effects of nickel. Continuous monitoring of these trace metals in seafood is necessary to ensure the quality of seafood and food safety.

Global biodiversity and biogeography of mangrove crabs: Temperature, the key driver of latitudinal gradients of species richness.

Mangroves are ideal habitat for a variety of marine species especially brachyuran crabs as the dominant macrofauna. However, the global distribution, endemicity, and latitudinal gradients of species richness in mangrove crabs remains poorly understood. Here, we assessed whether species richness of mangrove crabs decreases towards the higher latitudes and tested the importance of environmental factors such as Sea Surface Temperature (SST) in creating the latitudinal gradients in species richness of mangrove crabs. A total of 8262 distribution records of 481 species belonging to six families of mangrove crabs including Camptandriidae, Dotillidae, Macrophthalmidae, Ocypodidae, Sesarmidae, and Oziidae were extracted from open-access databases or collected by the authors, quality controlled, cleaned, and analyzed. Species richness was plotted against 5° latitudinal bands in relation to environmental factors. The R software and ArcGIS 10.6.1 were used to analyze the species latitudinal range and richness as well as to map the distribution of mangrove forest, endemic species, species geographical distribution records, and biogeographic regions. The Indo-West Pacific showed the highest species richness of mangrove crabs where more than 65% of species were found in the Indian Ocean and along the western Pacific Ocean. Our results showed that there are 11 significantly different biogeographic regions of mangrove crabs. The highest endemicity rate was observed in the NW Pacific Ocean (29%). Latitudinal patterns of species richness in Macrophthalmidae, Ocypodidae, and Sesarmidae showed an increasing trend from the poles toward the intermediate latitudes including one dip near the equator. However, latitudinal gradients in Camptandriidae, Dotillidae, and Oziidae were unimodal increasing from the higher latitudes towards the equator. Species richness per 5° latitudinal bands significantly increased following mean SST mean (°C), calcite, euphotic depth (m), and mangrove area (km2) across all latitudes, and tide average within each hemisphere. Species richness significantly decreased with dissolved O2 (ml l-1) and nitrate (µmol l-1) over all latitudes and in the southern hemisphere. The climax of global latitudinal species richness for some mangrove was observed along latitudes 20° N and 15°-25° S, not at the equator. This can suggest that temperature is probably the key driver of latitudinal gradients of mangrove crabs' species richness. Species richness and mangrove area were also highly correlated.

New insights on the marine cytochrome P450 enzymes and their biotechnological importance.

The monooxygenase enzymes, cytochrome P450s (CYPs), are ubiquitous in their presence and versatile in their functions. They are indispensable for hormone synthesis, dietary metabolism, and detoxification among other roles. CYPs from marine organisms are interesting candidates for recruitment in drug biotransformation, synthesis of therapeutics, bioconversion of xenobiotics, degradation of chemical carcinogens, and for use as ecotoxicological tools. However, excess CYP production in marine organisms indicates a 'stressed condition', which has a negative impact on the ecological balance. This review discusses the CYPs in marine organisms of various phyla, their application potentials, as well as the need to restore normal CYP level in them to regulate the relationship between marine organisms and environment.

The emerging use of bioluminescence in medical research.

Bioluminescence is the light produced by a living organism and is commonly emitted by sea life with Ca2+-regulated photoproteins being the most responsible for bioluminescence emission. Marine coelenterates provide important functions involved in essential purposes such as defense, feeding, and breeding. In this review, the main characteristics of marine photoproteins including aequorin, clytin, obelin, berovin, pholasin and symplectin from different marine organisms will be discussed. We will focused on the recent use of recombinant photoproteins in different biomedical research fields including the measurement of Ca2+ in different intracellular compartments of animal cells, as labels in the design and development of binding assays. This review will also outline how bioluminescent photoproteins have been used in a plethora of analytical methods including ultra-sensitive assays and in vivo imaging of cellular processes. Due to their unique properties including elective intracellular distribution, wide dynamic range, high signal-to-noise ratio and low Ca2+-buffering effect, recombinant photoproteins represent a promising future analytical tool in several in vitro and in vivo experiments.

Light emission miracle in the sea and preeminent applications of bioluminescence in recent new biotechnology.

Bioluminescence is referred to the light emission by a living organism due to a specific biochemical reaction. This interesting feature of the organisms could highly influences behavioral and ecosystem dynamics. Luminescence, mostly observed in marine species, is generally higher in deep-living genera than in benthic or shallow organisms. However, among creatures living in land, fireflies, beetles, springtails and fungi have shown some bioluminescent activities. Classically, the emission of light is catalyzed by luciferase from a substrate. Interestingly, light-emitting organisms are more abundant and widespread in marine than terrestrial environments. Novel tools derived from understanding bioluminescent reactions have led to countless valuable applications in modern biotechnology and biochemical engineering. Here, we overview some main properties bioluminescence in marine organism from bacteria to fishes following the latest advances and new discoveries of state-of-the-art bioluminescent tools in molecular biology, bioluminescent bioassays and imaging. The overview showed available and wide biotechnological tools of bioluminescence take advantage of its high detectability, high sensitive, low toxic and quantum efficiency which make wide usage as reporter of many biological functions in different fields, such as studying bacterial pathogens, ecotoxicology, food toxicity, tracking cells of interest in vivo, protein-protein interactions, gene expression and circadian rhythms. With the recent invention of luminescent reporters, future possibilities for the development of additional reporter applications are promising.

Reproductive biology of Sodhiana iranica (Brachyura: Gecarcinucidae) from Southern Iran / Biología reproductiva del cangrejo de agua dulce Sodhiana iranica (Brachyura: Gecarcinidae) del sur de Irán

Abstract:Freshwater crab, Sodhiana iranica, is an endemic gecarcinucid crab that has been recently reported from Southern Iran. This research examined some reproductive aspects of S. iranica from Eelood freshwater spring, Southern Iran. Crabs were haphazardly sampled from April 2012 to April 2013, on a bimonthly basis. Measurements of Gonado-Somatic Index (GSI), Hepato-Somatic Index (HSI), oocyte diameter, and other aspects such as carapace width (CW) and total body weight (TW) were made in the captured specimens. Results showed a single seasonal reproductive cycle. Maturation and spawning occurred from December 2012 to April 2013 during the study period. The peaks of HSI were observed in April 2012 and February 2013. The oocyte diameter showed its most significant increase between August 2012 and February 2013. Considering the single seasonal breeding of S. iranica, a correct management, during the reproductive cycle, is necessary to support a healthy stock of this crab. Rev. Biol. Trop. 65 (1): 365-373. Epub 2017 March 01.

ResumenEl cangrejo agua dulce Sodhiana iranica es un cangrejo gecarcinucido que ha sido recientemente encontrado en el sur de Irán. Este trabajo examina algunos aspectos de la reproducción del cangrejo de agua dulce S. Iranica en el manantial Eelood del sur de Irán. Los cangrejos se muestrearon al azar entre abril 2012 y abril 2013 cada dos meses. Las mediciones del índice gonadosomático, el hepatosomático (HSI), el diámetro de los ovocitos y las observaciones de las etapas de maduración de los especímenes capturados, revelaron un único ciclo reproductivo estacional. La maduración y el desove se produjeron entre Diciembre 2012 y Abril 2013. El pico del índice hepatosomático se observó en Abril 2012 y Febrero 2013, respectivamente, y resultó más significativo el incremento en la media del diámetro de los ovocitos, que se produjo entre Agosto 2012 y Febrero 2013. En este estudio, se encontró que S. iranica se reproduce una vez al año estacionalmente. Por lo anterior, la gestión correcta durante el ciclo reproductivo de esta especie es necesaria para mantener la naturaleza y salud del stock de cangrejo.

Reproductive biology of Sodhiana iranica (Brachyura: Gecarcinucidae) from Southern Iran.

Freshwater crab, Sodhiana iranica, is an endemic gecarcinucid crab that has been recently reported from Southern Iran. This research examined some reproductive aspects of S. iranica from Eelood freshwater spring, Southern Iran. Crabs were haphazardly sampled from April 2012 to April 2013, on a bimonthly basis. Measurements of Gonado-Somatic Index (GSI), Hepato-Somatic Index (HSI), oocyte diameter, and other aspects such as carapace width (CW) and total body weight (TW) were made in the captured specimens. Results showed a single seasonal reproductive cycle. Maturation and spawning occurred from December 2012 to April 2013 during the study period. The peaks of HSI were observed in April 2012 and February 2013. The oocyte diameter showed its most significant increase between August 2012 and February 2013. Considering the single seasonal breeding of S. iranica, a correct management, during the reproductive cycle, is necessary to support a healthy stock of this crab.

A new species of freshwater crab of the genus Sodhiana Yeo & Ng, 2012 (Decapoda: Brachyura: Gecarcinucidae) from southern Iran.

A new species of freshwater crab, Sodhiana iranica n. sp. (Decapoda: Brachyura: Gecarcinucidae), is described from Bastak, Iran. This is fourth species of Sodhiana Yeo & Ng, 2012, described, and is the second one known from Iran. It can be distinguished from congeners by the form of its carapace and the structure of the male first gonopod.