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1.
Zootaxa ; 5264(2): 221-234, 2023 Apr 13.
Article in English | MEDLINE | ID: mdl-37518054

ABSTRACT

The northwestern Pacific soft bottom dwelling spider crab, Pisoides bidentatus (A. Milne-Edwards, 1873) (Brachyura: Majoidea: Epialtidae), is re-described using an integrative approach. As a result, it is transferred to the genus Scyra Dana, 1851 (Epialtidae) based on morphological and molecular data, as well as already described larval morphology, which certainly better reflects the phylogenetic relationships of the species. Japanese Pisoides ortmanni (Balss, 1924), for which morphology and ecology are very similar to P. bidentatus as well as Pugettia quadridens (De Haan, 1839) and the closely related Pugettia ferox Ohtsuchi & Kawamura, 2019, are also transferred to Scyra. The "reduced" morphology of both species is very different from the related northwestern Pacific Scyra spp. and Pugettia spp., which are mostly decorating algae-dwellers. We associate the relatively long ambulatory legs, a smooth tear-drop shaped carapace with a reduced dorsal armature and slightly pronounced pseudorostral spines, characteristic of P. bidentatus and P. ortmanni with their open soft (mainly sand) bottom habitats, where it is difficult to find a foothold or shelter, but it is necessary to resist constant currents. Such morphology is also characteristic of spider crabs of the genera Libinia Leach, 1815 and Doclea Leach, 1815 (Epialtidae: Pisinae), which are also living in similar habitats/conditions and represent a convergent morphological appearance.


Subject(s)
Brachyura , Animals , Japan , Phylogeny , Animal Shells , Larva
2.
Zool Stud ; 60: e54, 2021.
Article in English | MEDLINE | ID: mdl-35665086

ABSTRACT

Sympatric two-species infestation by rhizocephalan parasites in the spider crab Pugettia aff. ferox Ohtsuchi & Kawamura, 2019 (Brachyura: Epialtidae) was investigated in the Vostok Bay (Peter the Great Bay, northwestern Sea of Japan). Morphological and molecular analyses showed that this crab was infested simultaneously by Sacculina pugettiae Shiino, 1943 and Parasacculina pilosella (Van Kampen et Boschma, 1925) (Cirripedia: Rhizocephala). Sacculina pugettiae was found in the northwestern Sea of Japan for the first time. The two rhizocephalan species are clearly distinguishable by the morphology of their external cuticles, the shape and position of their receptacles, and the structure of their colleteric glands. Retinacula are present in the mature externae of both species. Molecular analysis showed that these rhizocephalans are unrelated, although both species parasitize Pugettia aff. ferox and are sympatric. Sacculina pilosella should be placed in the genus Parasacculina Høeg & Glenner, 2019, belonging to the family Polyascidae Høeg & Glenner, 2019. The intensity of infestation reached two externae in P. pilosella and three externa in S. pugettiae per host. A simultaneous settlement of two rhizocephalans on the same crab specimen was shown for the first time. The intensity of the two-species multiple infestations reached four externae per host. Externae with developing embryos occurred from June to September in P. pilosella and July to September in S. pugettiae, at water temperatures of 15-24°C, indicating that the reproductive periods of these species are confined to the summer months in the investigated locality.

3.
Zootaxa ; 4768(1): zootaxa.4768.1.2, 2020 Apr 30.
Article in English | MEDLINE | ID: mdl-33056533

ABSTRACT

A rhizocephalan parasite of the hermit crab Pagurus minutus Hess, 1865 (Decapoda, Paguridae) is described from Russian waters using morphological and molecular methods. Partial sequences of the mitochondrial cytochrome c oxidase subunit I gene (COI) were used as a genetic marker. We refer this species to Peltogaster reticulata Shiino, 1943 (Rhizocephala, Peltogastridae) based on its morphological description, since genetic data for the species from its type locality are lacking. The species can be distinguished from its known congeners by the reticular pattern of the external cuticle. Peltogaster reticulata is the sister taxon to P. postica Yoshida Osawa, 2011 (in Yoshida et al. 2011), inhabiting the same host in southwestern Japan. The complete larval development of Peltogaster reticulata, including five naupliar and one cypris stage, is described and illustrated using SEM.


Subject(s)
Anomura , Parasites , Thoracica , Animals , Japan , Russia
4.
Mitochondrial DNA A DNA Mapp Seq Anal ; 28(5): 703-710, 2017 09.
Article in English | MEDLINE | ID: mdl-27159730

ABSTRACT

Species of the genus Nipponacmea inhabit only the Pacific coast of Asia, including the Russian Far East. Their external morphological characters are highly variable and often lead to misidentifications of species. So far, little research has been conducted using molecular markers. We used sequences from three mitochondrial genes (fragments of cytochrome c oxidase subunit I gene (COI), 12S and 16S rDNA). For comparison, additional genetic and taxonomic data on other species belonging to this genus were derived from GenBank. The molecular phylogenetic trees suggest that the species N. fuscoviridis and N. nigrans are species complexes. N. fuscoviridis is divided into three subgroups with high support and relatively large distances between them (N. fuscoviridis A, B and C); N. nigrans fall into two subgroups and one of them (N. nigrans A) is more closely related to N. moskalevi than to the other subgroup of N. nigrans (B).


Subject(s)
DNA, Mitochondrial/genetics , Gastropoda/classification , Genetic Variation , Sequence Analysis, DNA/methods , Animals , Electron Transport Complex IV/genetics , Gastropoda/genetics , Phylogeny , RNA, Ribosomal/genetics , RNA, Ribosomal, 16S/genetics
5.
Article in English | MEDLINE | ID: mdl-24841433

ABSTRACT

The systematics and phylogeny of flatfish is investigated on the complete sequence of nucleotides at subunit 1 cytochrome c oxidase (Co-1) and cytochrome b (Cyt-b) genes. In total 17 species from our collection and some species from GenBank were analyzed. Four types of trees were built: Bayesian (BA), maximum likelihood (ML), maximum parsimony (MP), and neighbor joining (NJ). These trees showed similar topology. Two separate clusters on the trees support subfamily Hippoglossoidinae and Hippoglossinae subdivision and monophyletic status of these taxa. The subfamily Pleuronectinae also can be considered monophyletic, if the tribe Microstomini is excluded from it and genus Lepidopsetta is moved into the tribe Pleuronectini. Mitogenomes represented by 25 complete sequences from NCBI GenBank were analyzed. After alignment two sets of nucleotide sequences were formed and investigated independently. One set included 13 structural genes (14,886 bp), the second set comprised by the mtDNA without ND6 gene (10,457 bp). Both data sets give congruent phylogenetic signal that agreed with conventional views on the taxonomy of the order Pleuronectiformes; however, the first set gives better topology. In BA gene tree there are two well supported nodes which include the representatives of suborders Pleuronectoidei and Psettoidei. Within Pleuronectoidei two superfamilies, Pleuronectoidea and Soleidea are highly supported in BA but in all four kinds of gene trees (BA, ML, MP and NJ) the only superfamily Pleuronectoidea is well supported. At the top of hierarchy, all flatfishes belonging to the order Pleuronectiformes forming also a monophyletic clade in our data, with support level of 100% but in BA tree only. The monophyly of the family Pleuronectidae is well supported both by single gene data and by complete mtDNA sequences.


Subject(s)
Cytochromes b/genetics , DNA, Mitochondrial/genetics , Electron Transport Complex IV/genetics , Flatfishes/genetics , Genes, Mitochondrial , Genome, Mitochondrial , Phylogeny , Animals , Species Specificity
6.
Mitochondrial DNA ; 19(6): 479-89, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19489134

ABSTRACT

Mitochondrial DNA at the cytochrome oxidase 1 (Co-1) gene region was sequenced for six flatfish species (in total, 11 sequences of at least 539 base pairs) from the Far East of Russia and compared with other sequences of Pleuronectiformes, comprising altogether 26 flatfish sequences and two outgroup sequences (Perciformes). An analysis of the protein-coding Co-1 gene revealed a statistically substantiated bias in (T + C):(A + G) content, supporting earlier findings. Average scores of the p-distances for different scales of the evolutionary history at the Co-1 gene revealed a clear pattern of increased nucleotide diversity at four different levels: (1) intraspecies, (2) intragenus, (3) intrafamily, and (4) intra-order. Scores of average p-distances of the four categories of comparison in flatfishes were (1) 0.17 +/- 0.09%, (2) 10.60 +/- 1.57%, (3) 12.40 +/- 0.27%, and (4) 19.93 +/- 0.05%, respectively (mean +/- standard error). These data jointly with current knowledge support the concept that speciation in the order Pleuronectiformes mostly follows a geographic mode through accumulation of numerous small genetic changes over a long period of time. A phylogenetic tree for 26 sequences of flatfishes and two other fishes belonging to ray-finned fishes (Actinopterigii) was developed using the Co-1 gene and four different analytical approaches: neighbour-joining, Bayesian (BA), maximum parsimony (MP), and maximum likelihood. The analysis revealed a monophyletic origin for the representatives of Pleuronectidae, which is the principal flatfish family investigated (73-100% support level in our MP and BA analyses). According to the current and literary data, the monophyletic origin for the six compared flatfish families was well supported. Species identification on a per-individual basis (barcoding tagging) was high.


Subject(s)
DNA, Mitochondrial/genetics , Electron Transport Complex IV/genetics , Fish Proteins/genetics , Flatfishes/genetics , Animals , Base Composition , Base Sequence , Bayes Theorem , DNA Primers/genetics , DNA, Mitochondrial/chemistry , Evolution, Molecular , Flatfishes/classification , Flatfishes/metabolism , Likelihood Functions , Models, Genetic , Molecular Sequence Data , Phylogeny , Russia , Species Specificity
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