Methylerythritol 4-phosphate (MEP) pathway metabolic regulation.

Covering: up to February 2014. The methylerythritol 4-phosphate (MEP) pathway is the recently discovered source of isoprenoid precursors isopentenyl diphosphate (IDP) and dimethylallyl diphosphate (DMADP) in most bacteria, some eukaryotic parasites, and the plastids of plant cells. The precursors lead to the formation of various isoprenoids having diverse roles in different biological processes. Some isoprenoids have important commercial uses. Isoprene, which is made in surprising abundance by some trees, plays a significant role in atmospheric chemistry. The genetic regulation of this pathway has been discussed but information about metabolic regulation is just now becoming available. This review covers metabolic regulation of the MEP pathway starting from the inputs of carbon, ATP, and reducing power. A number of different regulatory mechanisms involving intermediate metabolites and/or enzymes are discussed. Some recent data indicate that methylerythritol cyclodiphosphate (MEcDP), the fifth intermediate of this pathway, is a key metabolite. It has been found to play diverse roles in regulation within the pathway as well as coordinating other biological processes by acting as a stress regulator in bacteria and possibly a retrograde signal from plastids to the nucleus in plants. In this review we focus on the role of the MEP pathway in photosynthetic leaves during isoprene emission and more generally the metabolic regulation of the MEP pathway in both plants and bacteria.

Diffusive and metabolic limitations to photosynthesis under drought and salinity in C(3) plants.

Drought and salinity are two widespread environmental conditions leading to low water availability for plants. Low water availability is considered the main environmental factor limiting photosynthesis and, consequently, plant growth and yield worldwide. There has been a long-standing controversy as to whether drought and salt stresses mainly limit photosynthesis through diffusive resistances or by metabolic impairment. Reviewing in vitro and in vivo measurements, it is concluded that salt and drought stress predominantly affect diffusion of CO(2) in the leaves through a decrease of stomatal and mesophyll conductances, but not the biochemical capacity to assimilate CO(2), at mild to rather severe stress levels. The general failure of metabolism observed at more severe stress suggests the occurrence of secondary oxidative stresses, particularly under high-light conditions. Estimates of photosynthetic limitations based on the photosynthetic response to intercellular CO(2) may lead to artefactual conclusions, even if patchy stomatal closure and the relative increase of cuticular conductance are taken into account, as decreasing mesophyll conductance can cause the CO(2) concentration in chloroplasts of stressed leaves to be considerably lower than the intercellular CO(2) concentration. Measurements based on the photosynthetic response to chloroplast CO(2) often confirm that the photosynthetic capacity is preserved but photosynthesis is limited by diffusive resistances in drought and salt-stressed leaves.

Engineering plants for elevated CO(2): a relationship between starch degradation and sugar sensing.

In the future, plants will have additional CO(2) for photosynthesis. However, plants do not take maximal advantage of this additional CO(2) and it has been hypothesized that end product synthesis limitations and sugar sensing mechanisms are important in regulating plant responses to increasing CO(2). Attempts to increase end product synthesis capacity by engineering increased sucrose-phosphate synthase activity have been generally, but not universally, successful. It was found that plants benefited from a two- to three-fold increase in SPS activity but a 10-fold increase did not increase yield. Despite the success in increasing yield, increasing SPS did not increase photosynthesis. However, carbon export from chloroplasts was increased during the day and reduced at night (when starch provides carbon for sucrose synthesis. We develop here a hypothesis that starch degradation is closely sensed by hexokinase because a newly discovered pathway required for starch to sucrose conversion that involves maltose is one of few metabolic pathways that requires hexokinase activity.

Promoter strength and tissue specificity effects on growth of tomato plants transformed with maize sucrose-phosphate synthase.

When sucrose-phosphate synthase (SPS; EC 2.4.1.14) is expressed in tomato (Lycopersicon esculentum Mill.) from a ribulose-1,5-bisphosphate carboxylase-oxygenase (Rubisco) small subunit (rbcS) promoter, yields are often unchanged but when SPS is expressed from a Cauliflower Mosaic Virus 35S promoter, yield is enhanced up to 80%. Two explanations for this phenomenon are (i) that expression of SPS in tissues other than leaves accounts for the increased yield or (ii) that the lower level of expression directed by the 35S promoter is more beneficial than the high level of expression directed by the rbcS promoter. To test the first hypothesis, we conducted a reciprocal graft experiment, which showed that root SPS activity did not substantially affect growth. To test the second hypothesis, we conducted a field trial using a backcrossed, segregating, population of SPS-transformed plants derived from 35S and rbcS lines. The optimal dose of SPS activity for growth was approximately twice that of the wild type regardless of which promoter was used. The effect of SPS on growth was the result of a shift in partitioning of carbon among starch, sucrose, and ionic compounds (primarily amino acids), rather than of an increase in net photosynthesis. Excessive SPS activity resulted in a decreased rate of amino acid synthesis, which could explain the non-linear response of plant growth to the level of SPS expression.

Isoprene increases thermotolerance of fosmidomycin-fed leaves.

Isoprene is synthesized and emitted in large amounts by a number of plant species, especially oak (Quercus sp.) and aspen (Populus sp.) trees. It has been suggested that isoprene improves thermotolerance by helping photosynthesis cope with high temperature. However, the evidence for the thermotolerance hypothesis is indirect and one of three methods used to support this hypothesis has recently been called into question. More direct evidence required new methods of controlling endogenous isoprene. An inhibitor of the deoxyxylulose 5-phosphate pathway, the alternative pathway to the mevalonic acid pathway and the pathway by which isoprene is made, is now available. Fosmidomycin eliminates isoprene emission without affecting photosynthesis for several hours after feeding to detached leaves. Photosynthesis of fosmidomycin-fed leaves recovered less following a 2-min high-temperature treatment at 46 degrees C than did photosynthesis of leaves fed water or fosmidomycin-fed leaves in air supplemented with isoprene. Photosynthesis of Phaseolus vulgaris leaves, which do not make isoprene, exhibited increased thermotolerance when isoprene was supplied in the airstream flowing over the leaf. Other short-chain alkenes also improved thermotolerance, whereas alkanes reduced thermotolerance. It is concluded that thermotolerance of photosynthesis is a substantial benefit to plants that make isoprene and that this benefit explains why plants make isoprene. The effect may be a general hydrocarbon effect and related to the double bonds in the isoprene molecule.

Increased heat sensitivity of photosynthesis in tobacco plants with reduced Rubisco activase.

High temperature inhibits photosynthesis by several mechanisms including deactivation of Rubisco. The inhibition of photosynthesis by high temperature and its relationship to Rubisco deactivation was studied using tobacco (Nicotiana tabaccum L. cv W38) transformed with a Rubisco activase gene inserted in the antisense orientation and untransformed controls. High temperature (42 degrees C) reduced photosynthesis in both lines of plants. However, photosynthesis recovered nearly completely in wild-type plants and very little in plants lacking Rubisco activase. The F(0)' level of chlorophyll fluorescence decreased and q(N) increased in the control plants during heating. In the antisense plants, q(N) was always high and F(0)' increased slightly during heat stress. NADP-malate dehydrogenase activation was unaffected by heat stress in control plants but was increased in the transgenic plants, consistent with a high redox status in the chloroplast. In wild-type plants, the inhibition of photosynthesis could be explained by a reversible decarbamylation of Rubisco and an acceptor-side limitation imposed on photosynthetic electron transport. However, in the anti-activase plants, carbamylation was low and constant and could not explain how photosynthesis was reduced at high temperature. Because ribulose bisphosphate was saturating at high temperature, the reduction in photosynthesis must have been caused by some impairment of Rubisco function not reflected in measurements of activation state or carbamylation status. This in vivo Rubisco impairment was not relieved upon return to lower temperature. We speculate that the reversible decarbamylation of Rubisco at moderately high temperature may be a protective mechanism by which the plant avoids more serious effects on Rubisco and the rest of the photosynthetic apparatus.

Evolutionary significance of isopreneemission from mosses.

Isoprene emission has been documented and characterized from species in all major groups of vascular plants. We report in our survey that isoprene emission is much more common in mosses and ferns than later divergent land plants but is absent in liverworts and hornworts. The light and temperature responses of isoprene emission from Sphagnum capillifolium (Ehrh.) Hedw. are similar to those of other land plants. Isoprene increases thermotolerance of S. capillifolium to the same extent seen in higher plants as measured by chlorophyll fluorescence. Sphagnum species in a northern Wisconsin bog experienced large temperature fluctuations similar to those reported in tree canopies. Since isoprene has been shown to help plants cope with large, rapid temperature fluctuations, we hypothesize the thermal and correlated dessication stress experienced by early land plants provided the selective pressure for the evolution of light-dependent isoprene emission in the ancestors of modern mosses. As plants radiated into different habitats, this capacity was lost multiple times in favor of other thermal protective mechanisms.

The small, methionine-rich chloroplast heat-shock protein protects photosystem II electron transport during heat stress.

Evidence suggests that the small chloroplast heat-shock protein (Hsp) is involved in plant thermotolerance but its site of action is unknown. Functional disruption of this Hsp using anti-Hsp antibodies or addition of purified Hsp to chloroplasts indicated that (a) this Hsp protects thermolabile photosystem II and, consequently, whole-chain electron transport during heat stress; and (b) this Hsp completely accounted for heat acclimation of electron transport in pre-heat-stressed plants. Therefore, this Hsp is a major adaptation to acute heat stress in plants.

Isoprene Increases Thermotolerance of Isoprene-Emitting Species.

Isoprene-emitting plants lose a large portion of their assimilated C as isoprene. Because isoprene synthesis can be regulated, it has been assumed that isoprene benefits the plant. Since the rate of isoprene emission from leaves is highly responsive to temperature, we hypothesized that isoprene benefits plants by increasing their thermotolerance. We used three methods to measure isopreneinduced thermotolerance in leaves. Each technique assayed thermotolerance under conditions that suppressed endogenous isoprene synthesis. When measured by chlorophyll fluorescence, thermotolerance of kudzu (Pueraria lobata [Willd.] Ohwi.) leaves increased as much as 4[deg]C in very low light. With higher light, isoprene increased thermotolerance of kudzu leaves by as much as 10[deg]C. When measured as the temperature at which photosynthesis declined to zero, thermotolerance increased with added isoprene by 2.5[deg]C. All three measures of thermotolerance were dose dependent. Both fluorescence techniques also showed isoprene-induced thermotolerance in white oak (Quercus alba L.). Thermotolerance was not observed in bean (Phaseolus vulgaris var Linden), a species that does not emit isoprene. None of the experiments was designed to determine the mechanism of thermotolerance, but we theorize that isoprene functions by enhancing hydrophobic interactions in membranes.

Different sources of reduced carbon contribute to form three classes of terpenoid emitted by Quercus ilex L. leaves.

Quercus ilex L. leaves emit terpenes but do not have specialized structures for terpene storage. We exploited this unique feature to investigate terpene biosynthesis in intact leaves of Q. ilex. Light induction allowed us to distinguish three classes of terpenes: (i) a rapidly induced class including alpha-pinene; (ii) a more slowly induced class, including cis-beta-ocimene; and (iii) the most slowly induced class, including 3-methyl-3-buten-1-ol. Using 13C, we found that alpha-pinene and cis-beta-ocimene were labeled quickly and almost completely while there was a delay before label appeared in linalool and 3-methyl-3-buten-1-ol. The acetyl group of 3-methyl-3-buten-1-yl acetate was labeled quickly but label was limited to 20% of the moiety. It is suggested that the ocimene class of monoterpenes is made from one or more terpenes of the alpha-pinene class and that both classes are made entirely from reduced carbon pools inside the chloroplasts. Linalool and 3-methyl-3-buten-1-ol are made from a different pool of reduced carbon, possibly in nonphotosynthetic plastids. The acetyl group of the 3-methyl-3-buten-1-yl acetate is derived mostly from carbon that does not participate in photosynthetic reactions. Low humidity and prolonged exposure to light favored ocimenes emission and induced linalool emission. This may indicate conversion between terpene classes.

Field measurements of isoprene emission from trees in response to temperature and light.

The atmospheric hydrocarbon budget is important for predicting ozone episodes and the effects of pollution mitigation strategies. Isoprene emission from plants is an important part of the atmospheric hydrocarbon budget. We measured isoprene emission capacity at the bottom, middle, and top of the canopies of a white oak (Quercus alba L.) tree and a red oak (Quercus rubra L.) tree growing adjacent to a tower in the Duke University Forest. Leaves at the top of the white oak tree canopy had a three- to fivefold greater capacity for emitting isoprene than leaves at the bottom of the tree canopy. Isoprene emission rate increased with increasing temperature up to about 42 degrees C. We conclude that leaves at the top of the white oak tree canopy had higher isoprene emission rates because they were exposed to more sunlight, reduced water availability, and higher temperature than leaves at the bottom of the canopy. Between 35 and 40 degrees C, white oak photosynthesis and stomatal conductance declined, whereas red oak (Quercus rubra) photosynthesis and stomatal conductance increased over this range. Red oak had lower rates of isoprene emission than white oak, perhaps reflecting the higher stomatal conductance that would keep leaves cool. The concentration of isoprene inside the leaf was estimated with a simplified form of the equation used to estimate CO(2) inside leaves.

Modification of a Specific Class of Plasmodesmata and Loss of Sucrose Export Ability in the sucrose export defective1 Maize Mutant.

We report on the export capability and structural and ultrastructural characteristics of leaves of the sucrose export defective1 (sed1; formerly called sut1) maize mutant. Whole-leaf autoradiography was combined with light and transmission electron microscopy to correlate leaf structure with differences in export capacity in both wild-type and sed1 plants. Tips of sed1 blades had abnormal accumulations of starch and anthocyanin and distorted vascular tissues in the minor veins, and they did not export sucrose. Bases of sed1 blades were structurally identical to those of the wild type and did export sucrose. Electron microscopy revealed that only the plasmodesmata at the bundle sheath-vascular parenchyma cell interface in sed1 minor veins were structurally modified. Aberrant plasmodesmal structure at this critical interface results in a symplastic interruption and a lack of phloem-loading capability. These results clarify the pathway followed by photosynthates, the pivotal role of the plasmodesmata at the bundle sheath-vascular parenchyma cell interface, and the role of the vascular parenchyma cells in phloem loading.

Isoprene synthesis by plants and animals.

Isoprene is emitted from both plants and animals at significant rates. There is evidence for a specific enzyme, isoprene synthase, that produces isoprene from dimethyl allyl pyrophosphate, one of the intermediates involved in the synthesis of higher-order isoprenoids such as cholesterol, carotenoids and monoterpenes (for example, pine scent). The role of isoprene in animals is unknown, but there is recent evidence that isoprene helps protect plant membranes involved in photosynthesis from thermal damage. Isoprene emission from plants is a natural process that contributes more hydrocarbon to the atmosphere than all of the anthropogenic hydrocarbons.

Intracellular localization of CA1P and CA1P phosphatase activity in leaves of Phaseolus vulgaris L.

CA1P and CA1P phosphatase occur in the chloroplasts of leaf mesophyll cells of many species. However, whether either may occur exclusively in the chloroplast has not yet been established. To examine their intracellular distribution, mature, dark-or light-treated leaves of Phaseolus vulgaris were frozen, lyophilized and then centrifuged in density gradients of heptane and tetrachloroethylene. After gradient fractionation, both CA1P and CA1P phosphatase activity co-segregated with chloroplast material. Distribution analyses using sub-cellular compartment markers indicated that both CA1P and CA1P phosphatase do occur exclusively in leaf chloroplasts.

Efficiency of photosynthesis in continuous and pulsed light emitting diode irradiation.

The light utilization efficiency and relative photon requirement of photosynthesis in pulsed and continuous light from light emitting diodes (LEDs) has been measured. First, we chacterized the photon requirement of photosynthesis from light of LEDs that differ in spectral quality. A photon requirement of 10.3±0.4 was measured using light from a 658 nm peak wavelength (22 nm half band width) LED over the range of 0-50 µmol photons m(-2) s(-1) in 2 kPa O2 in leaves of tomato (Lycopersicon esculentum Mill., cv. VF36). Because the conversion of electrical power to photons increased with wavelength, LED lamps with peak photon output of 668 nm were most efficient for converting electricity to photosynthetically fixed carbon. The effect of pulsed irradiation on photosynthesis was then measured. When all of the light to make the equivalent of 50 µmol photons m(-2) s(-1) was provided during 1.5 µs pulses of 5000 µmol photons m(-2) s(-1) followed by 148.5 µs dark periods, photosynthesis was the same as in continuous 50 µmol photons m(-2) s(-1). When the pulse light and dark periods were lengthened to 200 µs and 19.8 ms, respectively, photosynthesis was reduced, although the averaged photon flux density was unchanged. Under these conditions, the light pulses delivered 10(17) photons m(-2), which we calculate to be equivalent to the capacitance of PS I or PS II. Data support the theory that photons in pulses of 100 µs or shorter are absorbed and stored in the reaction centers to be used in electron transport during the dark period. When light/dark pulses were lengthened to 2 ms light and 198 ms dark, net photosynthesis was reduced to half of that measured in continuous light. Pigments of the xanthophyll cycle were not affected by any of these pulsed light treatments even though zeaxanthin formation occurred when leaves were forced to dissipate an equal amount of continuous light.

Isoprene Emission from Velvet Bean Leaves (Interactions among Nitrogen Availability, Growth Photon Flux Density, and Leaf Development).

Although isoprene synthesis is closely coupled to photosynthesis, both via ATP requirements and carbon substrate availability, control of isoprene emission is not always closely linked to photosynthetic processes. In this study we grew velvet bean (Mucuna sp.) under different levels of photon flux density (PFD) and nitrogen availability in an effort to understand better the degree to which these two processes are linked. As has been observed in past studies, we found that during early leaf ontogeny the onset of positive rates of net photosynthesis precedes that of isoprene emission by 3 to 4 d. Other studies have shown that this lag is correlated with the induction of isoprene synthase activity, indicating that overall control of the process is under control of that enzyme. During leaf senescence, photosynthesis rate and isoprene emission rate declined in parallel, suggesting similar controls over the two processes. This coordinated decline was accelerated when plants were grown with high PFD and high nitrogen availability. The latter effect included declines in the photon yield of photosynthesis, suggesting that an unexplained stress arose during growth under these conditions, triggering a premature decline in photosynthesis and isoprene emission rate. In mature leaves, growth PFD and nitrogen nutrition affected photosynthesis and isoprene emission in qualitatively similar, but quantitatively different, ways. This resulted in a significant shift in the percentage of fixed carbon that was re-emitted as isoprene. In the case of increasing growth PFD, isoprene emission rate was more strongly affected than photosynthesis rate, and more carbon was lost as isoprene. In the case of increasing nitrogen, photosynthesis rate increased more than isoprene emission rate, and leaves containing high amounts of nitrogen lost a lower percentage of their assimilated carbon as isoprene. Taken together, our results demonstrate that, although the general correlation between isoprene emission rate and photosynthesis rate is consistently expressed, there is evidence that both processes are capable of independent responses to plant growth environment.

Measurements of mesophyll conductance, photosynthetic electron transport and alternative electron sinks of field grown wheat leaves.

Photosynthetic electron transport drives the carbon reduction cycle, the carbon oxidation cycle, and any alternative electron sinks such as nitrogen reduction. A chlorophyll fluorescence- based method allows estimation of the total electron transport rate while a gas-exchange-based method can provide estimates of the electron transport needed for the carbon reduction cycle and, if the CO2 partial pressure inside the chloroplast is accurately known, for the carbon oxidation cycle. The gas-exchange method cannot provide estimates of alternative electron sinks. Photosynthetic electron transport in flag leaves of wheat was estimated by the fluorescence method and gasexchange method to determine the possible magnitude of alternative electron sinks. Under non-photorespiratory conditions the two measures of electron transport were the same, ruling out substantial alternative electron sinks. Under photorespiratory conditions the fluorescence-based electron transport rate could be accounted for by the carbon reduction and carbon oxidation cycle only if we assumed the CO2 partial pressure inside the chloroplasts to be lower than that in the intercellular spaces of the leaves. To further test for the presence of alternative electron sinks, carbon metabolism was inhibited by feeding glyceraldehyde. As carbon metabolism was inhibited, the electron transport was inhibited to the same degree. A small residual rate of electron transport was measured when carbon metabolism was completely inhibited which we take to be the maximum capacity of alternative electron sinks. Since the alternative sinks were small enough to ignore, the comparison of fluorescence and gas-exchange based methods for measuring the rate of electron transport could be used to estimate the mesophyll conductance to CO2 diffusion. The mesophyll conductance estimated this way fell as wheat flag leaves senesced. The age-related decline in photosynthesis may be attributed in part to the reduction of mesophyll conductance to CO2 diffusion and in part to the estimated decline of ribulose 1,5-bisphosphate carboxylase amount.

Light-emitting diodes as a light source for photosynthesis research.

Light-emitting diodes (LED) can provide large fluxes of red photons and so could be used to make lightweight, efficient lighting systems for photosynthetic research. We compared photosynthesis, stomatal conductance and isoprene emission (a sensitive indicator of ATP status) from leaves of kudzu (Pueraria lobata (Willd) Ohwi.) enclosed in a leaf chamber illuminated by LEDs versus by a xenon arc lamp. Stomatal conductance was measured to determine if red LED light could sufficiently open stomata. The LEDs produced an even field of red light (peak emission 656±5 nm) over the range of 0-1500 µmol m(-2) s(-1). Under ambient CO2 the photosynthetic response to red light deviated slightly from the response measured in white light and stomatal conductance followed a similar pattern. Isoprene emission also increased with light similar to photosynthesis in white light and red light. The response of photosynthesis to CO2 was similar under the LED and xenon arc lamps at equal photosynthetic irradiance of 1000 µmol m(-2) s(-1). There was no statistical difference between the white light and red light measurements in high CO2. Some leaves exhibited feedback inhibition of photosynthesis which was equally evident under irradiation of either lamp type. Photosynthesis research including electron transport, carbon metabolism and trace gas emission studies should benefit greatly from the increased reliability, repeatability and portability of a photosynthesis lamp based on light-emitting diodes.

On the relationship between isoprene emission and photosynthetic metabolites under different environmental conditions.

Isoprene emission is related to photosynthesis but the nature of the relationship is not yet known. To explore this relationship we have examined the rate of isoprene emission, photosynthesis, and the contents of photosynthetic metabolites in leaves of velvet bean (Mucuna deeringeniana L.) and red oak (Quercus rubra L.) in response to a light-to-dark transition and to changes in air composition. Isoprene emission fell when darkness was imposed and the drop was associated with reduced amounts of ribulose-1,5-bisphosphate and ATP. The rate of isoprene emission and ATP content were reduced to the same extent by exposure to low O2 or high CO2 partial pressures. Only when O2 and CO2 were simultaneously removed from the air did the rate of isoprene emission drop without a corresponding change in ATP. The results demonstrate that when carbon is not limiting, isoprene emission is highly correlated with ATP content. When synthesis of phosphoglyceric acid is inhibited, however, carbon availability may control isoprene production.