Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 21
Filter
1.
Aliment Pharmacol Ther ; 41(11): 1141-8, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25864945

ABSTRACT

BACKGROUND: Infections are an important concern in patients using immunosuppressive therapy for their inflammatory bowel disease (IBD). Diabetes affects nearly 10% of Americans. Whether it confers an additional risk with immunosuppression in IBD has not been examined previously. AIM: To examine the association between diabetes and infections with immunomodulator use in IBD METHODS: Using a validated, multi-institutional IBD cohort, we identified all patients who received at least one prescription for immunomodulators (thiopurines, methotrexate). Our primary outcome was infection within 1 year of the prescription of the immunomodulator. Multivariable logistic regression adjusting for relevant confounders was used to estimate the independent association with diabetes. RESULTS: Our study included 2766 patients receiving at least one prescription for immunomodulators among whom 210 (8%) developed an infection within 1 year. Patients who developed an infection were likely to be older, have more comorbidities, more likely to have received a prescription for steroids but similar in initiation of anti-TNF therapy within that year. Only 8% of those without an infection had diabetes compared to 19% of those who developed an infection within 1 year [odds ratio (OR) 2.74, 95% confidence interval (CI) 1.88-3.98, P < 0.001]. On multivariate analysis, diabetes was independently associated with a nearly two-fold increase in risk of infections (OR: 1.80, 95% CI: 1.20-2.68). There was no increase in risk of infections with addition of anti-TNF therapy (OR: 1.14, 95% CI: 0.80-1.63). CONCLUSION: Diabetes is an independent risk factor for infection in IBD patients using immunomodulator therapy.


Subject(s)
Diabetes Mellitus/epidemiology , Immunologic Factors/therapeutic use , Inflammatory Bowel Diseases/drug therapy , Adult , Female , Humans , Immunologic Factors/adverse effects , Logistic Models , Male , Methotrexate/adverse effects , Methotrexate/therapeutic use , Middle Aged , Multivariate Analysis , Odds Ratio , Risk , Risk Factors , Tumor Necrosis Factor-alpha/antagonists & inhibitors
2.
Aliment Pharmacol Ther ; 39(10): 1136-42, 2014 May.
Article in English | MEDLINE | ID: mdl-24641590

ABSTRACT

BACKGROUND: Patients with inflammatory bowel diseases (IBD) have an increased risk of clostridium difficile infection (CDI). Cathelicidins are anti-microbial peptides that attenuate colitis and inhibit the effect of clostridial toxins. Plasma calcifediol [25(OH)D] stimulates production of cathelicidins. AIM: To examine the association between plasma 25(OH)D and CDI in patients with IBD. METHODS: From a multi-institutional IBD cohort, we identified patients with at least one measured plasma 25(OH)D. Our primary outcome was development of CDI. Multivariate logistic regression models adjusting for potential confounders were used to identify independent effect of plasma 25(OH)D on risk of CDI. RESULTS: We studied 3188 IBD patients of whom 35 patients developed CDI. Patients with CDI-IBD were older and had greater co-morbidity. The mean plasma 25(OH)D level was significantly lower in patients who developed CDI (20.4 ng/mL) compared to non-CDI-IBD patients (27.1 ng/mL) (P = 0.002). On multivariate analysis, each 1 ng/mL increase in plasma 25(OH)D was associated with a 4% reduction in risk of CDI (OR 0.96, 95% CI 0.93-0.99, P = 0.046). Compared to individuals with vitamin D >20 ng/mL, patients with levels <20 ng/mL were more likely to develop CDI (OR 2.27, 95% CI 1.16-4.44). The mean plasma 25(OH)D in patients with CDI who subsequently died was significantly lower (12.8 ± 8.1 ng/mL) compared to those who were alive at the end of follow-up (24.3 ± 13.2 ng/mL) (P = 0.01). CONCLUSIONS: Higher plasma calcifediol [25(OH)D] is associated with reduced risk of C. difficile infection in patients with IBD. Further studies of therapeutic supplementation of vitamin D in patients with inflammatory bowel disease and C. difficile infection may be warranted.


Subject(s)
Clostridioides difficile/isolation & purification , Clostridium Infections/epidemiology , Inflammatory Bowel Diseases/complications , Vitamin D/analogs & derivatives , Adult , Aged , Clostridium Infections/etiology , Cohort Studies , Female , Follow-Up Studies , Humans , Logistic Models , Male , Middle Aged , Multivariate Analysis , Risk , Vitamin D/blood
3.
Aliment Pharmacol Ther ; 37(4): 445-54, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23289600

ABSTRACT

BACKGROUND: Psychiatric co-morbidity, in particular major depression and anxiety, is common in patients with Crohn's disease (CD) and ulcerative colitis (UC). Prior studies examining this may be confounded by the co-existence of functional bowel symptoms. Limited data exist examining an association between depression or anxiety and disease-specific endpoints such as bowel surgery. AIMS: To examine the frequency of depression and anxiety (prior to surgery or hospitalisation) in a large multi-institution electronic medical record (EMR)-based cohort of CD and UC patients; to define the independent effect of psychiatric co-morbidity on risk of subsequent surgery or hospitalisation in CD and UC, and to identify the effects of depression and anxiety on healthcare utilisation in our cohort. METHODS: Using a multi-institution cohort of patients with CD and UC, we identified those who also had co-existing psychiatric co-morbidity (major depressive disorder or generalised anxiety). After excluding those diagnosed with such co-morbidity for the first time following surgery, we used multivariate logistic regression to examine the independent effect of psychiatric co-morbidity on IBD-related surgery and hospitalisation. To account for confounding by disease severity, we adjusted for a propensity score estimating likelihood of psychiatric co-morbidity influenced by severity of disease in our models. RESULTS: A total of 5405 CD and 5429 UC patients were included in this study; one-fifth had either major depressive disorder or generalised anxiety. In multivariate analysis, adjusting for potential confounders and the propensity score, presence of mood or anxiety co-morbidity was associated with a 28% increase in risk of surgery in CD (OR: 1.28, 95% CI: 1.03-1.57), but not UC (OR: 1.01, 95% CI: 0.80-1.28). Psychiatric co-morbidity was associated with increased healthcare utilisation. CONCLUSIONS: Depressive disorder or generalised anxiety is associated with a modestly increased risk of surgery in patients with Crohn's disease. Interventions addressing this may improve patient outcomes.


Subject(s)
Anxiety Disorders/complications , Colitis, Ulcerative/complications , Crohn Disease/complications , Depressive Disorder/complications , Adult , Aged , Anxiety Disorders/surgery , Colitis, Ulcerative/surgery , Comorbidity , Crohn Disease/surgery , Depressive Disorder/surgery , Female , Humans , Logistic Models , Male , Middle Aged , Risk Factors , Severity of Illness Index
4.
Lab Chip ; 12(17): 3103-10, 2012 Sep 07.
Article in English | MEDLINE | ID: mdl-22760641

ABSTRACT

Efficient methods to immobilize small molecules under continuous-flow microfluidic conditions would greatly improve label-free molecular interaction studies using biosensor technology. At present, small-molecule immobilization chemistries require special conditions and in many cases must be performed outside the detector and microfluidic system where real-time monitoring is not possible. Here, we have developed and optimized a method for on-chip bioorthogonal chemistry that enables rapid, reversible immobilization of small molecules with control over orientation and immobilization density, and apply this technique to surface plasmon resonance (SPR) studies. Immobilized small molecules reverse the orientation of canonical SPR interaction studies, and also enable a variety of new SPR applications including on-chip assembly and interaction studies of multicomponent structures, such as functionalized nanoparticles, and measurement of bioorthogonal reaction rates. We use this approach to demonstrate that on-chip assembled functionalized nanoparticles show a preserved ability to interact with their target protein, and to measure rapid bioorthogonal reaction rates with k(2) > 10(3) M(-1) s(-1). This method offers multiple benefits for microfluidic biological applications, including rapid screening of targeted nanoparticles with vastly decreased nanoparticle synthetic requirements, robust immobilization chemistry in the presence of serum, and a continuous flow technique that mimics biologic contexts better than current methods used to measure bioorthogonal reaction kinetics such as NMR or UV-vis spectroscopy (e.g., stopped flow kinetics). Taken together, this approach constitutes a flexible and powerful technique for evaluating a wide variety of reactions and intermolecular interactions for in vitro or in vivo applications.


Subject(s)
Nanoparticles/chemistry , Proteins/metabolism , Surface Plasmon Resonance , Biosensing Techniques , Cyclization , Cycloparaffins/chemistry , Cycloparaffins/metabolism , Kinetics , Ligands , Microfluidic Analytical Techniques/instrumentation , Protein Binding , Proteins/chemistry
5.
Chronic Dis Can ; 29(1): 31-8, 2008.
Article in English | MEDLINE | ID: mdl-19036221

ABSTRACT

This study estimated agreement between population-based administrative and survey data for ascertaining cases of arthritis, asthma, diabetes, heart disease, hypertension and stroke. Chronic disease case definitions that varied by data source, number of years and number of diagnosis or prescription drug codes were constructed from Manitoba's administrative data. These data were linked to the Canadian Community Health Survey. Agreement between the two data sources, estimated by the kappa coefficient, was calculated for each case definition, and differences were tested. Socio-demographic and comorbidity variables associated with agreement were tested using weighted logistic regression. Agreement was strongest for diabetes and hypertension and lowest for arthritis. The case definition elements that contributed to the highest agreement between the two population-based data sources varied across the chronic diseases. Low agreement between administrative and survey data is likely to occur for conditions that are difficult to diagnose, but will be mediated by individual socio-demographic and health status characteristics. Construction of a chronic disease case definition from administrative data should be accompanied by a justification for the choice of each of its elements.


Subject(s)
Chronic Disease/epidemiology , Adolescent , Adult , Aged , Arthritis/epidemiology , Asthma/epidemiology , Cardiovascular Diseases/epidemiology , Chi-Square Distribution , Child , Chronic Disease/drug therapy , Comorbidity , Databases, Factual , Diabetes Mellitus/epidemiology , Drug Prescriptions/statistics & numerical data , Female , Health Status Indicators , Health Surveys , Humans , Logistic Models , Male , Manitoba/epidemiology , Middle Aged , Socioeconomic Factors
6.
Anal Biochem ; 270(2): 286-95, 1999 Jun 01.
Article in English | MEDLINE | ID: mdl-10334846

ABSTRACT

Proteins that are heavily glycosylated pose unique challenges in their biophysical characterization. In particular, molecular weight analysis is exacerbated by such glycosylation. For example, glyoproteins are refractory to careful mass spectrum analysis and often give anomalous retention times using size exclusion chromatography. We combine several approaches to characterize the molecular weights of the extracellular domains of the glycoproteins CTLA-4 and CD80 using carbohydrate analysis, electrospray mass spectrometry, size exclusion chromatography, and analytical ultracentrifugation. In addition, we have applied a method described previously, using sedimentation equilibrium analysis to calculate the contribution of carbohydrates to the molecular masses of CTLA-4 and CD80. It is important to understand the oligomeric states of these protein domains because the interaction between these lymphocyte receptors plays an important costimulatory role in the Th-cell antigenic response. It is thought that extracellular interactions between these receptors may regulate both the self-association of these receptor proteins and the oligomeric state of the heterocomplex; this regulation has important consequences for potentiating the signaling mechanism between Th-cells and antigen-presenting cells.


Subject(s)
Antigens, Differentiation/chemistry , B7-1 Antigen/chemistry , Centrifugation, Density Gradient/methods , Immunoconjugates , Abatacept , Antigens, CD , CTLA-4 Antigen , Carbohydrate Sequence , Dimerization , Mass Spectrometry/methods , Molecular Sequence Data , Molecular Weight , Protein Conformation
7.
Circ Res ; 82(8): 845-51, 1998 May 04.
Article in English | MEDLINE | ID: mdl-9576104

ABSTRACT

We identified the cell surface glycoprotein Thy-1 on the endothelium of newly formed blood vessels in four models of angiogenesis in adult rats. Anti-Thy-1 staining showed that Thy-1 was upregulated in adventitial blood vessels after balloon injury to the carotid artery. Preabsorption with a rat Thy-1-Ig fusion construct eliminated all immunoreactivity and thus confirmed the specificity of the Thy-1 staining. Thy-1 was also expressed in the endothelium of small blood vessels formed after tumor implantation in the cornea, in periureteral vessels formed after ligation of the renal artery, and in small blood vessels of the uterus formed during pregnancy. In contrast with its expression during adult angiogenesis, Thy-1 was not expressed in the endothelium of blood vessels during embryonic angiogenesis. In vitro, the inflammatory cytokines interleukin-1beta and tumor necrosis factor-alpha upregulated Thy-1 mRNA by 8- and 14-fold, respectively. Vascular endothelial growth factor, basic fibroblast growth factor, transforming growth factor-beta, and platelet-derived growth factor-BB had no effect on Thy-1 mRNA. Thus, Thy-1 appears to be a marker of adult but not embryonic angiogenesis. The upregulation of Thy-1 by cytokines but not growth factors indicates the importance of inflammation in the pathogenesis of adult angiogenesis.


Subject(s)
Carotid Artery Injuries , Cornea/blood supply , Cytokines/pharmacology , Endothelium, Vascular/physiopathology , Gene Expression Regulation , Glioblastoma/blood supply , Neovascularization, Pathologic , Neovascularization, Physiologic , Renal Artery Obstruction/physiopathology , Thy-1 Antigens/biosynthesis , Angioplasty, Balloon , Animals , Biomarkers , Carotid Arteries/immunology , Carotid Arteries/pathology , Cornea/immunology , Cornea/pathology , Embryonic and Fetal Development , Endothelium, Vascular/drug effects , Endothelium, Vascular/immunology , Female , Gene Expression Regulation/drug effects , Glioblastoma/immunology , Immunohistochemistry , Inflammation , Interleukin-1/pharmacology , Male , Pregnancy , Rats , Rats, Sprague-Dawley , Renal Artery Obstruction/immunology , Thy-1 Antigens/analysis , Transcription, Genetic/drug effects , Transcription, Genetic/immunology , Tumor Necrosis Factor-alpha/biosynthesis , von Willebrand Factor/analysis , von Willebrand Factor/biosynthesis
8.
Nat Struct Biol ; 4(7): 527-31, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9228944

ABSTRACT

The structure of human CTLA-4 reveals that residues Met 99, Tyr 100 and Tyr 104 of the M99YPPPY104 motif are adjacent to a patch of charged surface residues on the A'GFCC' face of the protein. Mutation of these residues, which are conserved in the CTLA-4/CD28 family, significantly reduces binding to CD80 and/or CD86, implicating this patch as a ligand binding site.


Subject(s)
Antigens, CD/metabolism , Antigens, Differentiation/chemistry , Antigens, Differentiation/metabolism , B7-1 Antigen/metabolism , CD28 Antigens/metabolism , Immunoconjugates , Membrane Glycoproteins/metabolism , Abatacept , Amino Acid Sequence , Animals , Antigens, Differentiation/genetics , B7-2 Antigen , Binding Sites , CTLA-4 Antigen , Conserved Sequence , Dimerization , Humans , Magnetic Resonance Spectroscopy/methods , Models, Molecular , Molecular Sequence Data , Protein Conformation , Sequence Homology, Amino Acid , Solutions , Sulfides
9.
Proc Natl Acad Sci U S A ; 94(5): 1692-7, 1997 Mar 04.
Article in English | MEDLINE | ID: mdl-9050840

ABSTRACT

We show that supercoiling of a DNA trefoil, the simplest knotted ring, perturbs differently the spatial writhe of its two chiral forms. As a consequence, the negative-noded and positive-noded DNA trefoils can be resolved by gel electrophoresis. Analysis of the chirality of trefoils produced by cyclization of two linear DNAs demonstrates that the two chiral trefoils are produced in equal amounts, suggesting that these DNAs do not prefer intrinsic writhe of one chirality or the other. In contrast, knotting of nicked DNA rings by a molar excess of Saccharomyces cerevisiae DNA topoisomerase II produces more negative-noded than positive-noded trefoils, indicating an asymmetry in the interaction between the enzyme and DNA crossovers of different signs. These results suggest that asymmetry in DNA crossovers and intrinsic or ligand-induced writhe in a DNA might be detectable from an analysis of trefoil chirality.


Subject(s)
DNA, Circular/chemistry , DNA, Superhelical/chemistry , DNA/chemistry , Nucleic Acid Conformation , DNA/metabolism , DNA Topoisomerases, Type II/metabolism , DNA, Circular/metabolism , DNA, Superhelical/metabolism , Electrophoresis, Agar Gel , Saccharomyces cerevisiae/enzymology , Vaccinia virus/enzymology
10.
Circulation ; 94(6): 1412-22, 1996 Sep 15.
Article in English | MEDLINE | ID: mdl-8823001

ABSTRACT

BACKGROUND: Thrombolytic therapy reduces mortality in patients with acute myocardial infarction, but significant limitations exist with the use of currently available agents. In the present report, we describe the thrombolytic and antithrombotic potencies of a hybrid recombinant plasminogen activator consisting of an antifibrin antibody 59D8 (AFA) and low-molecular-weight single-chain urokinase-type plasminogen activator (scuPA). METHODS AND RESULTS: A thrombolysis model in which thrombi are preformed in vivo in juvenile baboons was developed to compare the potencies of AFA-scuPA, recombinant tissue plasminogen activator (rTPA), and recombinant scuPA (rscuPA) in lysing nonocclusive 111In-labeled platelet-rich arterial-type thrombi and 125I-labeled fibrin-rich venous-type thrombi. Systemic infusion of 1.89 nmol/kg AFA-scuPA produced thrombolysis that was comparable to that obtained with much higher doses of TPA (14.2 nmol/kg) and rscuPA (28.5 nmol/kg). When steady-state plasma concentrations are normalized, AFA-scuPA lyses thrombi sixfold more rapidly than scuPA and TPA (P < .001) and reduces the rate of formation more than comparable doses of rscuPA (P < .0001). At equivalent thrombolytic doses, AFA-scuPA produced fewer antihemostatic effects than either rTPA or rscuPA. Template bleeding time measurements were shorter (3.5 +/- 0.12 minutes for AFA-scuPA versus 5.3 +/- 0.36 and 5.2 +/- 0.04 minutes for rTPA and rscuPA, respectively; P < .05), alpha 2-antiplasmin consumption was less (P < .05), and D-dimer generation was lower (P < .05). CONCLUSIONS: We conclude that antibody targeting of scuPA to fibrin increases thrombolytic and antithrombotic potencies with less impairment of hemostasis compared with rTPA and rscuPA.


Subject(s)
Antibodies, Monoclonal/immunology , Fibrin/immunology , Plasminogen Activators/pharmacology , Thrombolytic Therapy , Thrombosis/prevention & control , Urokinase-Type Plasminogen Activator/pharmacology , Animals , Hemostasis/drug effects , Male , Recombinant Proteins , Tissue Plasminogen Activator/pharmacology
11.
Thromb Haemost ; 76(3): 429-38, 1996 Sep.
Article in English | MEDLINE | ID: mdl-8883282

ABSTRACT

Chimeric 59D8-SK was designed to confer fibrin-selectivity to streptokinase by fusion of the Fab fragment of anti-fibrin antibody 59D8 to the N-terminus of streptokinase (SK: Ile1-Lys414). It was expressed in a mouse hybridoma cell line and purified by affinity chromatography on a 59D8-antigen column. Chimeric 59D8-SK is a disulfide-linked heterodimer composed of an antibody light chain (Mr 27,000) and a N-glycosylated chimeric heavy chain (M(r) 90,000). The fibrin targeting by 59D8 increased plasma clot lysis by 2-fold, but connecting 59D8 to SK has provided 59D8-SK several unique properties: (i) 59D8-SK activated human Glu-plasminogen with a significant lag period that coincided with limited proteolysis of 59D8-SK similar to that observed for wild-type SK. In a kinetic study, both gave very similar kinetic parameters for the activation of Glu-plasminogen even though 59D8-SK was N-glycosylated in its SK portion; (ii) 59D8-SK was relatively inactive in human plasma, compared to SK, but it became activated in the presence of clots; (iii) 59D8-SK lysed clots slowly but completely whereas SK lysed clots rapidly but incompletely. Even though the mechanism behind these new properties is not fully understood, they are characteristics of a second-generation plasminogen activator.


Subject(s)
Fibrinolysis/drug effects , Immunoglobulin Fab Fragments/pharmacology , Recombinant Fusion Proteins/pharmacology , Streptokinase/pharmacology , Animals , Fibrin/immunology , Humans , Immunoglobulin Fab Fragments/genetics , Immunoglobulin Fab Fragments/immunology , Mice , Recombinant Fusion Proteins/genetics , Streptokinase/genetics
12.
Mol Biol Cell ; 6(9): 1231-40, 1995 Sep.
Article in English | MEDLINE | ID: mdl-8534918

ABSTRACT

We describe the expression of gpIRK1, an inwardly rectifying K+ channel obtained from guinea pig cardiac cDNA. gpIRK1 is a homologue of the mouse IRK1 channel identified in macrophage cells. Expression of gpIRK1 in Xenopus oocytes produces inwardly rectifying K+ current, similar to the cardiac inward rectifier current IK1. This current is blocked by external Ba2+ and Cs+. Plasmids containing the gpIRK1 coding region under the transcriptional control of constitutive (PGK) or inducible (GAL) promoters were constructed for expression in Saccharomyces cerevisiae. Several observations suggest that gpIRK1 forms functional ion channels when expressed in yeast. gpIRK1 complements a trk1 delta trk2 delta strain, which is defective in potassium uptake. Expression of gpIRK1 in this mutant restores growth on low potassium media. Growth dependent on gpIRK1 is inhibited by external Cs+. The strain expressing gpIRK1 provides a versatile genetic system for studying the assembly and composition of inwardly rectifying K+ channels.


Subject(s)
Potassium Channels, Inwardly Rectifying , Potassium/metabolism , Recombinant Fusion Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Amino Acid Sequence , Animals , Base Sequence , Biological Transport/drug effects , Cesium/pharmacology , Cloning, Molecular , DNA, Complementary/genetics , Gene Expression Regulation, Fungal , Genetic Complementation Test , Guinea Pigs , Molecular Sequence Data , Muscle Proteins/genetics , Muscle Proteins/metabolism , Myocardium/chemistry , Potassium Channels , Promoter Regions, Genetic , Sequence Alignment , Sequence Homology, Amino Acid , Species Specificity
13.
Protein Sci ; 3(5): 737-49, 1994 May.
Article in English | MEDLINE | ID: mdl-8061604

ABSTRACT

Two distinct spontaneous variants of the murine anti-digoxin hybridoma 26-10 were isolated by fluorescence-activated cell sorting for reduced affinity of surface antibody for antigen. Nucleotide and partial amino acid sequencing of the variant antibody variable regions revealed that 1 variant had a single amino acid substitution: Lys for Asn at heavy chain position 35. The second variant antibody had 2 heavy chain substitutions: Tyr for Asn at position 35, and Met for Arg at position 38. Mutagenesis experiments confirmed that the position 35 substitutions were solely responsible for the markedly reduced affinity of both variant antibodies. Several mutants with more conservative position 35 substitutions were engineered to ascertain the contribution of Asn 35 to the binding of digoxin to antibody 26-10. Replacement of Asn with Gln reduced affinity for digoxin 10-fold relative to the wild-type antibody, but maintained wild-type fine specificity for cardiac glycoside analogues. All other substitutions (Val, Thr, Leu, Ala, and Asp) reduced affinity by at least 90-fold and caused distinct shifts in fine specificity. The Ala mutant demonstrated greatly increased relative affinities for 16-acetylated haptens and haptens with a saturated lactone. The X-ray crystal structure of the 26-10 Fab in complex with digoxin (Jeffrey PD et al., 1993, Proc Natl Acad Sci USA 90:10310-10314) reveals that the position 35 Asn contacts hapten and forms hydrogen bonds with 2 other contact residues. The reductions in affinity of the position 35 mutants for digoxin are greater than expected based upon the small hapten contact area provided by the wild-type Asn. We therefore performed molecular modeling experiments which suggested that substitution of Gln or Asp can maintain these hydrogen bonds whereas the other substituted side chains cannot. The altered binding of the Asp mutant may be due to the introduction of a negative charge. The similarities in binding of the wild-type and Gln-mutant antibodies, however, suggest that these hydrogen bonds are important for maintaining the architecture of the binding site and therefore the affinity and specificity of this antibody. The Ala mutant eliminates the wild-type hydrogen bonding, and molecular modeling suggests that the reduced side-chain volume also provides space that can accommodate a congener with a 16-acetyl group or saturated lactone, accounting for the altered fine specificity of this antibody.


Subject(s)
Antibodies, Monoclonal/genetics , Digoxin/antagonists & inhibitors , Digoxin/immunology , Immunoglobulin Heavy Chains/genetics , Amino Acid Sequence , Animals , Antibodies, Monoclonal/chemistry , Antibody Specificity , Base Sequence , Binding Sites/genetics , Cardenolides/chemistry , Cardenolides/immunology , Cardiac Glycosides/chemistry , Cardiac Glycosides/immunology , Crystallography, X-Ray , DNA/genetics , Digoxin/chemistry , Genetic Variation , Hybridomas/immunology , Immunoglobulin Heavy Chains/chemistry , Mice , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed
14.
Biochemistry ; 33(8): p606-12, 1994 Mar 01.
Article in English | MEDLINE | ID: mdl-8117652

ABSTRACT

A new chimeric plasminogen activator with high fibrin affinity was designed to bind fibrin and to initiate clot destruction, following activation by thrombin. The chimeric activator, 59D8-scuPA-T, was made from the Fab fragment of an anti-fibrin antibody (59D8) and a C-terminal portion of a thrombin-activable low molecular weight single-chain urokinase plasminogen activator, scuPA-T, obtained by deletion of Phe-157 and Lys-158 from low molecular weight single-chain urokinase-type plasminogen activator (scuPA) by site-directed mutagenesis. The chimeric molecule had a molecular mass of 91,000, a value consistent with one 59D8 light chain (M(r) = 27,000) and one 59D8 heavy-chain Fd fragment fused to low molecular weight scuPA (M(r) = 64,000). According to its design, 59D8-scuPA-T was activated by thrombin but not by plasmin, whereas the control chimeric molecule, 59D8-scuPA, was activated by plasmin but not by thrombin. When activated by thrombin, 59D8-scuPA-T converted plasminogen to plasmin. In vitro plasma clot lysis assays showed that 59D8-scuPA-T lysed clots performed by thrombin and that heparin and hirudin could prevent clot lysis. When incorporated as part of a thrombin-induced clot, only 59D8-scuPA-T was able to lyse the clot while 59D8-scuPA and high molecular weight scuPA were ineffective. Together these results demonstrate that 59D8-scuPA-T is a thrombin-activable plasminogen activator that offers selective thrombolysis of thrombin-rich clots over more established, aged clots, and may also act as an antithrombotic agent.


Subject(s)
Thrombin/pharmacology , Urokinase-Type Plasminogen Activator/genetics , Base Sequence , Blood Coagulation , Cell Line , Cloning, Molecular , Drug Design , Fibrinolysin/pharmacology , Fibrinolysis/drug effects , Humans , Immunoglobulin Fab Fragments , Molecular Sequence Data , Oligodeoxyribonucleotides , Plasminogen/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/pharmacology , Urokinase-Type Plasminogen Activator/pharmacology
15.
J Biol Chem ; 268(31): 23000-7, 1993 Nov 05.
Article in English | MEDLINE | ID: mdl-8226814

ABSTRACT

In certain instances, antibody variable region mutations outside of the antigen-combining site influence antigen binding. We reported previously that a heavy chain mutation (Ser-94-->Arg) decreased binding of the anti-digoxin antibody 40-150, whereas an additional signal peptide mutation at the -2 position (Gln-->Pro) causing NH2-terminal 2-residue truncation partially restored binding. To assess the combined effects on binding of two seemingly distant mutations, we constructed signal peptide mutations and NH2-terminal deletions in the presence of Ser-94 and Arg-94. Deletions of one to three amino acids had little effect on binding for Ser-94 mutants, whereas 2-residue truncations produced directly or by signal peptide mutation increased affinity approximately 40-fold for Arg-94 mutants. These observations are consistent with the reported computer-generated model of antibody 40-150. Introduction of Pro at the signal peptide -3 position in 40-150 resulted in cleavage at alternative sites, with varying effects on affinity. Introduction of Pro at -2 into the anti-digoxin antibody 26-10 resulted, unexpectedly, in expression of heavy chains with 3 extra NH2-terminal residues, causing an approximately 100-fold reduction in affinity. Thus, both extensions and deletions of the heavy chain amino terminus can enhance or reduce antigen binding, depending on the structural context of specific antigen combining sites.


Subject(s)
Digoxin/immunology , Immunoglobulin Heavy Chains/chemistry , Immunoglobulin Variable Region/chemistry , Membrane Proteins , Serine Endopeptidases , Amino Acid Sequence , Animals , Base Sequence , Binding Sites, Antibody , Cloning, Molecular , Digoxin/metabolism , Endopeptidases/metabolism , Genes, Immunoglobulin , Immunoglobulin Heavy Chains/genetics , Immunoglobulin Variable Region/genetics , In Vitro Techniques , Mice , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Oligodeoxyribonucleotides/chemistry , Protein Binding , Protein Conformation , Protein Sorting Signals/chemistry , Restriction Mapping , Structure-Activity Relationship
16.
Science ; 260(5107): 533-6, 1993 Apr 23.
Article in English | MEDLINE | ID: mdl-8475384

ABSTRACT

The formation of knotted species on random ring closure of two DNAs that are 5.6 kilobase pairs (kbp) and 8.6 kbp in length was measured, and these data were used to calculate the effective DNA helix diameter as a function of sodium ion and magnesium ion concentration. In the presence of more than 50 mM magnesium ion, interactions between DNA segments appear to be attractive rather than repulsive. The free energy of formation of relaxed trefoil and figure-eight DNA knots and of supercoiled trefoil DNA knots was also evaluated.


Subject(s)
DNA, Circular/chemistry , DNA, Superhelical/chemistry , DNA/chemistry , Nucleic Acid Conformation , Base Sequence , DNA/metabolism , DNA, Circular/metabolism , DNA, Single-Stranded/chemistry , DNA, Superhelical/metabolism , Magnesium/pharmacology , Molecular Sequence Data , Probability , Sodium Chloride/pharmacology , Thermodynamics
17.
Mol Immunol ; 29(4): 525-9, 1992 Apr.
Article in English | MEDLINE | ID: mdl-1565100

ABSTRACT

The A/J murine hybridoma cell line 40-150 secretes antidigoxin antibodies with high affinity for digoxin. A first-order spontaneous mutant (40-150 A2.4) produces antibodies containing a mutation at heavy chain position 94 resulting in reduced affinity for digoxin. A second-order mutant (40-150 A2.4 P.10) derived from 40-150 A2.4 produces two species of antibody: one identical to 40-150 A2.4 and the other with a two amino acid truncation at the heavy chain amino-terminus [Panka et al., Proc. natn. Acad. Sci. U.S.A. 85, 3080-3084 (1988)]. The truncated antibody has increased affinity for digoxin relative to the nontruncated variant. Direct nucleotide sequence analysis of polymerase chain reaction amplified heavy chain variable region cDNA derived from 40-150 A2.4 P.10 reveals a point mutation at the -2 position of the signal peptide, resulting in a glutamine to proline change. Southern blots of genomic DNA from all three cell lines gave identical patterns and were consistent with a single heavy chain mRNA derived from a single rearranged gene. The presence of proline at the heavy chain -2 position of antibody 40-150 A2.4 P.10 partially shifts the cleavage site of the signal peptidase to the +2 position, resulting in the production of both full-length and truncated antibody heavy chains. Signal peptide mutation resulting in a change in antibody affinity for antigen is a hitherto unidentified possible mechanism for antibody diversification.


Subject(s)
Digoxin/immunology , Immunoglobulin Heavy Chains/genetics , Immunoglobulin Variable Region/genetics , Mutation , Amino Acid Sequence , Animals , Antibody Affinity , Base Sequence , Blotting, Southern , DNA/analysis , Gene Rearrangement , Hybridomas , Mice , Mice, Inbred A , Molecular Sequence Data , Polymerase Chain Reaction , Protein Sorting Signals , Sequence Homology, Nucleic Acid
18.
Proc Natl Acad Sci U S A ; 88(22): 10337-41, 1991 Nov 15.
Article in English | MEDLINE | ID: mdl-1946453

ABSTRACT

A recombinant plasminogen activator with high fibrin affinity and specificity was expressed by transfecting hybridoma cells with a plasmid that combines sequence coding for low molecular mass (32 kDa) single-chain urokinase-type plasminogen activator [scuPA(32kDa)] and anti-fibrin monoclonal antibody 59D8. The expression of the recombinant molecule [r-scuPA(32kDa)-59D8] was optimized by replacing the 3' untranslated region (initially that of high molecular mass scuPA) in the plasmid with the 3' untranslated region of either beta-globin or mouse immunoglobulin. This modification resulted in a greater than 100-fold improvement in the level of protein expression. The 103-kDa r-scuPA(32kDa)-59D8 protein displayed catalytic activity indistinguishable from that of high molecular mass scuPA and fibrin binding comparable to that of native antibody 59D8. r-scuPA(32kDa)-59D8 was 6 times more potent than high molecular mass scuPA in lysing a human plasma clot in vitro and was 20 times more potent than high molecular mass scuPA in the rabbit jugular vein model of thrombolysis. Molecules of this type may serve as prototypes for highly specific, antibody-targeted enzymes suitable for human use.


Subject(s)
Fibrin/metabolism , Fibrinolytic Agents/pharmacology , Tissue Plasminogen Activator/metabolism , Tissue Plasminogen Activator/pharmacology , Animals , Cloning, Molecular , Enzyme-Linked Immunosorbent Assay , Humans , Immunoglobulin G/genetics , Immunoglobulin Variable Region/genetics , Kinetics , Mice , Plasmids , Recombinant Proteins/metabolism , Restriction Mapping , Tissue Plasminogen Activator/genetics
19.
FEBS Lett ; 250(2): 306-10, 1989 Jul 03.
Article in English | MEDLINE | ID: mdl-2473918

ABSTRACT

The existence of disulfide crosslinks limits the number of possible folded structures a protein can assume. Thus localization of disulfide and thiol groups is a key to understanding the conformation and orientation of myelin proteolipid protein (PLP) in the myelin membrane. [14C]Carboxamidomethylated PLP was fragmented with chymotrypsin, and the resulting mixture was partially separated by reversed-phase HPLC. Purified 14C-labeled peptides and a disulfide containing peptide were characterized by amino acid analysis. These experiments showed that Cys-32 and Cys-34 are free thiols, and are presumably on the interior of the cell or within the membrane bilayer, and that Cys-200 and Cys-219 are joined by a disulfide bond, and are probably located on the extracellular face of the membrane. Sequence analysis experiments indicate that Cys-5, Cys-6 and Cys-9 are linked by disulfides, probably to other parts of the protein on the extracellular face of the membrane.


Subject(s)
Disulfides/analysis , Myelin Proteins/analysis , Sulfhydryl Compounds/analysis , Amino Acids/analysis , Animals , Cattle , Cross-Linking Reagents , Lipid Bilayers/analysis , Myelin Proteolipid Protein
20.
FEBS Lett ; 207(2): 266-70, 1986 Oct 27.
Article in English | MEDLINE | ID: mdl-2429866

ABSTRACT

Computer analysis of the intrinsic membrane protein, myelin proteolipid, shows strong sequence similarities between the putative extramembrane segments of the proteolipid protein and a number of viral proteins, several of which infect humans. These similarities are even more striking than those reported previously between viral proteins and the encephalitogenic myelin basic protein (MBP). These findings, along with other reports of molecular mimicry by viruses, suggest that immunological cross-reactions between virus-induced antibodies or T-cells and analogous antigenic determinants (epitopes) in myelin proteolipid could be involved in the pathophysiology of multiple sclerosis or post-infectious demyelinating syndromes.


Subject(s)
Myelin Proteins , Viral Proteins , Adenoviridae/analysis , Amino Acid Sequence , Cell Membrane/immunology , Cytoplasm/immunology , Epitopes/immunology , Herpesvirus 4, Human/analysis , Humans , Measles virus/analysis , Myelin Proteins/immunology , Myelin Proteolipid Protein , Myelin Sheath/immunology , Orthomyxoviridae/analysis
SELECTION OF CITATIONS
SEARCH DETAIL
...