Morpho-physiological and molecular characterization of drought tolerance traits in Gossypium hirsutum genotypes under drought stress.

Drought stress is one of the major abiotic stresses affecting lint yield and fibre quality in cotton. With increase in population, degrading natural resources and frequent drought occurrences, development of high yielding, drought tolerant cotton cultivars is critical for sustainable cotton production across countries. Six Gossypium hirsutum genotypes identified for drought tolerance, wider adaptability and better fibre quality traits were characterized for various morpho-physiological and biochemical characters and their molecular basis was investigated under drought stress. Under drought conditions, genotypes revealed statistically significant differences for all the morpho-physiological and biochemical traits. The interaction (genotype × treatment) effects were highly significant for root length, excised leaf water loss and cell membrane thermostability indicating differential interaction of genotypes under control and stress conditions. Correlation studies revealed that under drought stress, relative water content had significant positive correlation with root length and root-to-shoot ratio while it had significant negative correlation with excised leaf water loss, epicuticular wax, proline, potassium and total soluble sugar content. Analysis of expression of fourteen drought stress related genes under water stress indicated that both ABA dependent and ABA independent mechanisms of drought tolerance might be operating differentially in the studied genotypes. IC325280 and LRA5166 exhibited ABA mediated expression of stress responsive genes and traits. Molecular basis of drought tolerance in IC357406, Suraj, IC259637 and CNH 28I genotypes could be attributed to ABA independent pathway. Based on physiological phenotyping, the genotypes IC325280 and IC357406 were identified to possess better root traits and LRA5166 was found to have enhanced cellular level tolerance. Variety Suraj exhibited good osmotic adjustment and better root traits to withstand water stress. The identified drought component trait(s) in specific genotypes would pave way for their pyramiding through marker assisted cotton breeding.

Fine mapping QTL for drought resistance traits in rice (Oryza sativa L.) using bulk segregant analysis.

Drought stress is a major limitation to rice (Oryza sativa L.) yields and its stability, especially in rainfed conditions. Developing rice cultivars with inherent capacity to withstand drought stress would improve rainfed rice production. Mapping quantitative trait loci (QTLs) linked to drought resistance traits will help to develop rice cultivars suitable for water-limited environments through molecular marker-assisted selection (MAS) strategy. However, QTL mapping is usually carried out by genotyping large number of progenies, which is labour-intensive, time-consuming and cost-ineffective. Bulk segregant analysis (BSA) serves as an affordable strategy for mapping large effect QTLs by genotyping only the extreme phenotypes instead of the entire mapping population. We have previously mapped a QTL linked to leaf rolling and leaf drying in recombinant inbred (RI) lines derived from two locally adapted indica rice ecotypes viz., IR20/Nootripathu using BSA. Fine mapping the QTL will facilitate its application in MAS. BSA was done by bulking DNA of 10 drought-resistant and 12 drought-sensitive RI lines. Out of 343 rice microsatellites markers genotyped, RM8085 co-segregated among the RI lines constituting the respective bulks. RM8085 was mapped in the middle of the QTL region on chromosome 1 previously identified in these RI lines thus reducing the QTL interval from 7.9 to 3.8 cM. Further, the study showed that the region, RM212-RM302-RM8085-RM3825 on chromosome 1, harbours large effect QTLs for drought-resistance traits across several genetic backgrounds in rice. Thus, the QTL may be useful for drought resistance improvement in rice through MAS and map-based cloning.

Nitrophenolates spray can alter boll abscission rate in cotton through enhanced peroxidase activity and increased ascorbate and phenolics levels.

Field studies were conducted from 2002 to 2005 to evaluate foliar spray of Atonik (a plant growth regulator (PGR) containing nitrophenolates) on cotton boll abscission rate by assessing various reactive oxygen species (ROS) contents, antioxidant content and antioxidant enzyme activity from 1 to 9 days after anthesis (DAA). The result indicated that the nitrophenolate spray reduced hydrogen peroxide (H(2)O(2)), superoxide anion (O(2)(-)) accumulation, lipid peroxidation (malondialdehyde--MDA), lipoxygenase (LOX) activity and membrane permeability relative to the control. Antioxidant enzyme activity (superoxide dismutase, SOD; ascorbate peroxidase, APX; peroxidase, POX; glutathione peroxidase, GSH-Px) was significantly increased by the nitrophenolate spray. The POX (217%) and GSH-Px (242%) activities were enhanced compared with APX (7.7%) activity at 9 DAA. Enhanced accumulation of ascorbate (245%), phenol (253%) and proline (150%) was observed in nitrophenolate-sprayed plants compared with control at 9 DAA. Because ascorbate content is increased by higher dehydroascorbate reductase (DHAR) enzyme activity, the ascorbate was able to replenish reducing equivalents to phenoxyl radicals, resulting in an increase of phenolic compounds. The increased phenolic acid content may be involved in scavenging the ROS produced in developing cotton boll. The role of DHAR and glutathione reductase (GR) in keeping higher levels of reduced ascorbate and low levels of endogenous H(2)O(2) in the developing cotton boll may be the prerequisite for boll retention. Based on the present work, we conclude that nitrophenolate-sprayed plants counteracted the deleterious effects of ROS by the peroxide/phenolics/ascorbate system, which causes reduced boll abscission and increased yield.