ABSTRACT
A new approach to single-molecule DNA sequencing in which dNTPs, released by pyrophosphorolysis from the strand to be sequenced, are captured in microdroplets and read directly could have substantial advantages over current sequence-by-synthesis methods; however, there is no existing method sensitive enough to detect a single nucleotide in a microdroplet. We have developed a method for dNTP detection based on an enzymatic two-stage reaction which produces a robust fluorescent signal that is easy to detect and process. By taking advantage of the inherent specificity of DNA polymerases and ligases, coupled with volume restriction in microdroplets, this method allows us to simultaneously detect the presence of and distinguish between, the four natural dNTPs at the single-molecule level, with negligible cross-talk.
Subject(s)
Deoxyribonucleotides/analysis , High-Throughput Nucleotide Sequencing/methods , Sequence Analysis, DNA/methods , DNA-Directed DNA Polymerase/metabolism , Deoxyribonucleosides/chemistry , Deoxyribonucleotides/chemistry , Limit of Detection , Microscopy, Fluorescence , Oligodeoxyribonucleotides/biosynthesis , Oligodeoxyribonucleotides/chemistry , Sensitivity and SpecificityABSTRACT
Recent work has demonstrated increased levels of redox-active iron biominerals in Alzheimer's disease (AD) tissue. However, the origin, nature, and role of iron in AD pathology remains unclear. Using X-ray absorption, X-ray microspectroscopy, and electron microscopy techniques, we examined interactions between the AD peptide ß-amyloid (Aß) and ferrihydrite, which is the ferric form taken when iron is stored in humans. We report that Aß is capable of reducing ferrihydrite to a pure iron(II) mineral where antiferromagnetically ordered Fe(2+) cations occupy two nonequivalent crystal symmetry sites. Examination of these iron(II) phases following air exposure revealed a material consistent with the iron(II)-rich mineral magnetite. These results demonstrate the capability of Aß to induce the redox-active biominerals reported in AD tissue from natural iron precursors. Such interactions between Aß and ferrihydrite shed light upon the processes of AD pathogenesis, while providing potential targets for future therapies.
