Computational rationalization for the observed ground-state multiplicities of fluorinated acylnitrenes.

Computational methods are used to investigate the mechanism by which fluorination of acetylnitrene reduces the stabilization of the singlet configuration. ΔEST is made more positive (favoring the triplet state) by 1.9, 1.3, and 0.7 kcal/mol by the addition of the first, second, and third fluorine, respectively, at the CR-CC(2,3)/6-311(3df,2p)//B3LYP/6-31G(d,p) level of theory. Smaller effects observed with substitution of ß-fluorines in propanoylnitrene derivatives and examination of molecular geometries and orbitals demonstrate that the effect is due to inductive electron withdrawal by the fluorines, rather than hyperconjugation.

Computational investigation of the reaction mechanisms of nitroxyl and thiols.

Nitroxyl, or nitrosyl hydride, (HNO) is a pharmacologically relevant molecule whose physiological responses have been thought to result from modification of intracellular thiols. The reaction of HNO with thiols has been shown to lead to disulfides and sulfinamides. The free energies of reaction (DeltaG) and activation (DeltaG(++)) were determined for the reaction pathways of HNO and five different thiols using computational methods. The methods employed included B3LYP, MP2, and CBS-QB3, as well as IEF-PCM to approximate implicit water solvation. The five examined thiols were hydrogen sulfide, methanethiol, trifluoromethanethiol, thiophenol, and cysteine. A putative N-hydroxysulfenamide intermediate was the initial product for the reaction of HNO with a thiol. Analysis of the Wiberg bond indices indicated that the formation of the S-N bond was concerted with the proton transfers that led to the intermediate. The calculated pK(a) of protonated N-hydroxysulfenamide was approximately 13, and from the protonated N-hydroxysulfenamide intermediate, two irreversible reactions that lead to either the disulfide or sulfinamide were found. The calculated values of DeltaG(++) indicated the preferred reaction pathway would be dependent upon the hydrophobicity of the environment, the availability of a local base, and the identity of the thiol substituent. In a hydrophobic environment, the formation of the disulfide was kinetically favored. Formation of the sulfinamide product was expected to occur upon the protonation of the hydroxy group of the N-hydroxysulfenamide intermediate.

Mitochondrial transporters involved in oleic acid utilization and glutamate metabolism in yeast.

Utilization of fatty acids such as oleic acid as sole carbon source by the yeast Saccharomyces cerevisiae requires coordinated function of peroxisomes, where the fatty acids are degraded, and the mitochondria, where oxidation is completed. We identified two mitochondrial oxodicarboxylate transporters, Odc1p and Odc2p, as important in efficient utilization of oleic acid in yeast [Tibbetts et al., Arch. Biochem. Biophys. 406 (2002) 96-104]. Yet, the growth phenotype of odc1delta odc2delta strains indicated that additional transporter(s) were also involved. Here, we identify two putative transporter genes, YMC1 and YMC2, as able to suppress the odc1delta odc2delta growth phenotype. The mRNA levels for both are elevated in the presence of glycerol or oleic acid, as compared to glucose. Ymc1p and Ymc2p are localized to the mitochondria in oleic acid-grown cells. Deletion of all four transporters (quad mutant) prevents growth on oleic acid as sole carbon source, while growth on acetate is retained. It is known that the glutamate-sensitive retrograde signaling pathway is important for upregulation of peroxisomal function in response to oleic acid and the oxodicarboxylate alpha-ketoglutarate is transported out of the mitochondria for synthesis of glutamate. So, citric acid cycle function and glutamate synthesis were examined in transporter mutants. The quad mutant has significantly decreased citrate synthase activity and whole cell alpha-ketoglutarate levels, while isocitrate dehydrogenase activity is unaffected and glutamate dehydrogenase activity is increased 10-fold. Strains carrying only two or three transporter deletions exhibit intermediate affects. 13C NMR metabolic enrichment experiments confirm a defect in glutamate biosynthesis in the quad mutant and, in double and triple mutants, suggest increased cycling of the glutamate backbone in the mitochondria before export. Taken together these studies indicate that these four transporters have overlapping activity, and are important not only for utilization of oleic acid, but also for glutamate biosynthesis.