De novo Phased Genome Assembly, Annotation and Population Genotyping of Alectoris Chukar.

The Alectoris Chukar (chukar) is the most geographically widespread partridge species in the world, demonstrating exceptional adaptability to diverse ecological environments. However, the scarcity of genetic resources for chukar has hindered research into its adaptive evolution and molecular breeding. In this study, we have sequenced and assembled a high-quality, phased chukar genome that consists of 31 pairs of relatively complete diploid chromosomes. Our BUSCO analysis reported a high completeness score of 96.8% and 96.5%, with respect to universal single-copy orthologs and a low duplication rate (0.3% and 0.5%) for two assemblies. Through resequencing and population genomic analyses of six subspecies, we have curated invaluable genotype data that underscores the adaptive evolution of chukar in response to both arid and high-altitude environments. These data will significantly contribute to research on how chukars adaptively evolve to cope with desertification and alpine climates.

Breeding Behavior, Nestling Growth, and Begging Behavior in the Plain Laughingthrush (Garrulax davidi): Implications for Parent-Offspring Conflict.

Investigation on food allocation among nestlings of altricial birds is crucial in understanding parent-offspring conflicts within avian families. However, there is no consensus in empirical studies regarding whether parents or offspring determine the food allocation pattern within a brood. In the Plain Laughingthrush (Garrulax davidi), we examine the relationship between parental feeding strategies and nestling begging behaviors. Due to hatching asynchrony, larger nestlings have a competitive advantage in food acquisition over their smaller brood-mates; nevertheless, if the initial food-receivers were already satiated and did not immediately consume the food, parents would retrieve the food and re-allocate it to another nestling. This re-feeding tactic employed by parents reduced the likelihood of early-hatched nestlings monopolizing the food solely due to their larger body size. Our findings indicate that parents primarily allocated food based on nestling begging intensity, while their re-feeding tactic is determined by whether the first food-receivers have consumed the food. To date, our research demonstrates that while parental food allocation primarily hinges on the begging intensity of the nestlings, the decision to re-feed is contingent upon whether the initial recipients of the food ingest it immediately.

Effects of Climate Change on the Habitat of the Leopard (Panthera pardus) in the Liupanshan National Nature Reserve of China.

Climate change affects animal populations by affecting their habitats. The leopard population has significantly decreased due to climate change and human disturbance. We studied the impact of climate change on leopard habitats using infrared camera technology in the Liupanshan National Nature Reserve of Jingyuan County, Ningxia Hui Autonomous Region, China, from July 2017 to October 2019. We captured 25 leopard distribution points over 47,460 camera working days. We used the MAXENT model to predict and analyze the habitat. We studied the leopard's suitable habitat area and distribution area under different geographical scales in the reserve. Changes in habitat area of leopards under the rcp2.6, rcp4.5, and rcp8.5 climate models in Guyuan in 2050 were also studied. We conclude that the current main factors affecting suitable leopard habitat area were vegetation cover and human disturbance. The most critical factor affecting future suitable habitat area is rainfall. Under the three climate models, the habitat area of the leopard decreased gradually because of an increase in carbon dioxide concentration. Through the prediction of the leopard's distribution area in the Liupanshan Nature Reserve, we evaluated the scientific nature of the reserve, which is helpful for the restoration and protection of the wild leopard population.

Are microbes and metabolites influencing the parental consumption of nestlings' feces in gray-backed shrikes?

The behavioral video recordings of the gray-backed shrike Lanius tephronotus revealed that parent birds eat the feces produced by their nestlings. "Parental nutrition hypothesis" attributes the origin of this behavior to nutrition-recovery and cost-saving, respectively. However, the presence of usable nutrients in the nestlings' feces is unknown because of traditional technology. In this study, we analyzed all the metabolites and the variations in the diversity and content of microbes in the feces of gray-backed shrike nestlings. We aimed to report the changes in microbes and metabolites with the age of nestlings and point out that the parent birds that eat the feces may gain potential nutrition benefits. The results showed that the relative abundances of Proteobacteria, Firmicutes, and Bacteroidota, changed significantly when the nestlings were 6 days old. The relative abundances of 6 probiotics, which are involved in digestion, metabolism, and immunity-related physiological functions, decreased in the nestlings' feces gradually with age; therefore, these probiotics may be obtained by parent birds upon ingestion of the feces of young nestlings. Among the metabolites that were detected, 20 were lipids and some had a role in anti-parasitic functions and wound healing; however, their relative contents decreased with age. These beneficial substances in the nestlings' feces may stimulate the parents to swallow the feces. Moreover, there were many aromatic metabolites in the newly hatched nestlings' feces, but the content of bitter metabolites increased as they grew up. Therefore, our results are in accordance with the nutritional hypothesis.