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1.
J Pept Res ; 65(2): 261-71, 2005 Feb.
Article in English | MEDLINE | ID: mdl-15705168

ABSTRACT

Guanylate cyclase C (GC-C), a member of the membrane-bound GC family, consists of an extracellular domain (ECD) and an intracellular domain, which are connected by a single-transmembrane region. GC-C is a receptor protein, i.e. specifically stimulated by the endogenous peptides guanylin, uroguanylin, lymphoguanylin, and the exogenous peptide heat-stable enterotoxin (ST(a)), secreted by pathogenic Escherichia coli and acting on the intestinal brush border membranes. The binding of these peptide ligands to the ECD of GC-C results in the synthesis of cyclic GMP in cells, which, in turn, regulates a variety of intracellular physiologic processes. As the cloning of GC-C, its physiologic functions of each domain have been vigorously investigated. The structural characterization of the ligand-binding domain of the receptor promises to provide important clues for better understanding of the mechanisms of receptor recognition and activation. Recently, structural data for each domain of membrane-bound GCs and related proteins has become available. Coupling information obtained from such work and validation of structure-function relationships of GC-C and its ligands should allow for three-dimensional mapping of their interaction site in detail. Our approach to this issue involved designing photoaffinity-labeling ST(a) analogs, capable of binding covalently to the ligand-binding region of the ECD of GC-C. The photoaffinity-labeling ligand was used to covalently label a soluble form of the recombinant ECD protein. Mass spectrometric analyses of an endoproteinase digest of the ECD revealed that the ligand specifically bound to a narrow region contained in the membrane-proximal subdomain of the ECD of GC-C. These results will enable us to identify the possible binding motifs within the ligand-binding domain by computer modeling. In this review, we summarize the available data on the recognition mechanism between ST(a) and GC-C at the molecular level.


Subject(s)
Bacterial Toxins/chemistry , Bacterial Toxins/metabolism , Enterotoxins/chemistry , Enterotoxins/metabolism , Guanylate Cyclase/metabolism , Receptors, Peptide/metabolism , Signal Transduction , Amino Acid Sequence , Animals , Escherichia coli Proteins , Gastrointestinal Hormones/chemistry , Gastrointestinal Hormones/metabolism , Guanylate Cyclase/chemistry , Humans , Ligands , Molecular Sequence Data , Molecular Structure , Natriuretic Peptides , Peptides/chemistry , Peptides/metabolism , Protein Structure, Tertiary , Receptors, Enterotoxin , Receptors, Guanylate Cyclase-Coupled , Receptors, Peptide/chemistry
2.
J Pept Res ; 63(3): 200-6, 2004 Mar.
Article in English | MEDLINE | ID: mdl-15049831

ABSTRACT

Heat-stable enterotoxin (ST), a small peptide of 18 or 19 amino acid residues produced by enterotoxigenic Escherichia coli, is the cause of acute diarrhea in infants and travelers in developing countries. ST triggers a biological response by binding to a membrane-associated guanylyl cyclase C (GC-C) which is located on intestinal epithelial cell membranes. This binding causes an increase in the concentration of cGMP as a second messenger in cells and activates protein kinase A and cystic fibrosis transmembrane conductance regulator. Here we describe the crystal structure of an ST at 0.89 A resolution. The molecule has a ring-shaped molecular architecture consisting of six peptide molecules with external and internal diameters of approximately 35 and 7 A, respectively and a thickness of approximately 11 A. The conserved residues at the central portion of ST are distributed on the outer surface of the ring-shaped peptide hexamer, suggesting that the hexamer may be implicated in the association with GC-C through these invariant residues.


Subject(s)
Bacterial Toxins/chemistry , Enterotoxins/chemistry , Guanylate Cyclase/metabolism , Amino Acid Sequence , Bacterial Toxins/metabolism , Cell Membrane/enzymology , Crystallization , Crystallography, X-Ray , Enterotoxins/metabolism , Escherichia coli/metabolism , Escherichia coli Proteins , Molecular Conformation , Molecular Sequence Data , Peptides/chemistry , Sequence Alignment
3.
Int J Biol Macromol ; 29(4-5): 219-23, 2001 Dec 10.
Article in English | MEDLINE | ID: mdl-11718817

ABSTRACT

Cryogel, prevalent in the plasma of rheumatoid arthritis patients, is a plasma fibronectin (pFN)-extra domain A containing FN [EDA(+)FN]-fibrinogen (Fbg) aggregate formed by the addition of heparin (Hep) at low temperature. Although EDA(+)FN is not usually present in normal plasma, its prevalence in rheumatic patients induces cryogelation. In this study, we determined the hydrodynamic radius (R(h)) ratio (R(h)/R(h30)) of the cryogel component by dynamic light scattering in vitro. R(h)/R(h30) was normalized to R(h) at 30 degrees C (R(h30)) at several temperatures. The R(h)/R(h30) of Fbg was found to increase only by self-aggregation, whereas the R(h)/R(h30) of FNs does not increase in response to temperature changes. The R(h)/R(h30) of the Fbg/FN aggregate is increased by the addition of Hep, and the R(h)/R(h30) (12.5) of the Hep-induced EDA(+)FN/Fbg aggregate is greater than that (2.5) of the pFN/Fbg aggregate. These results suggest that cryogelation requires Fbg self-aggregation and the interaction between EDA(+)FN and Hep.


Subject(s)
Arthritis, Rheumatoid/blood , Cell Adhesion , Cells, Cultured , Fibrinogen/chemistry , Fibronectins/chemistry , Heparin/chemistry , Humans , Light , Protein Binding , Protein Structure, Tertiary , Scattering, Radiation , Temperature
4.
J Pept Res ; 57(5): 345-53, 2001 May.
Article in English | MEDLINE | ID: mdl-11350594

ABSTRACT

A method for the easy isolation and direct sequencing of N-terminally blocked peptide in proteins refractory to N-terminal sequencing was developed. It is based essentially on tandem enzymatic treatments of the protein with trypsin and carboxypeptidase B, and selective isolation of the Nalpha-blocked peptide using ion-exchange chromatography. The chromatographic step was optimized for picomole amounts of sample and very short elution times by placing a thin layer of the resin over the membrane of an ultrafiltration tube. The isolated fraction can be analyzed directly using MALDI or ESI mass spectrometry. The method was applied to several recombinant and natural N-terminal acetylated proteins. A critical discussion on the intrinsic limitations of the method is also given.


Subject(s)
Peptide Fragments/isolation & purification , Proteins/chemistry , Trypsin/chemistry , Peptide Fragments/chemistry , Peptide Mapping , Spectrometry, Mass, Electrospray Ionization , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
5.
J Immunol ; 166(4): 2610-6, 2001 Feb 15.
Article in English | MEDLINE | ID: mdl-11160323

ABSTRACT

M161Ag is a 43-kDa surface lipoprotein of Mycoplasma fermentans, serving as a potent cytokine inducer for monocytes/macrophages, maturing dendritic cells (DCs), and activating host complement on affected cells. It possesses a unique N-terminal lipo-amino acid, S:-diacylglyceryl cysteine. The 2-kDa macrophage-activating lipopeptide-2 (MALP-2), recently identified as a ligand for Toll-like receptor 2 (TLR2), is derived from M161Ag. In this study, we identified structural motifs sustaining the functions of M161Ag using wild-type and unlipidated rM161Ag with (SP(+)) or without signal peptides (SP(-)). Because the SP(+) rM161Ag formed dimers via 25Cys, we obtained a monomeric form by mutagenesis (SP(+)C25S). Only wild type accelerated maturation of human DCs as determined by the CD83/86 criteria, suggesting the importance of the N-terminal fatty acids for this function. Wild-type and the SP(+) form of monomer induced secretion of TNF-alpha and IL-12 p40 by human monocytes and DCs. Either lipid or signal peptide at the N-terminal portion of monomer was required for expression of this function. In contrast, murine macrophages produced TNF-alpha in response to wild type, but not to any recombinant form of M161Ag, suggesting the species-dependent response to rM161Ag. Wild-type and both monomeric and dimeric SP(+) forms possessed the ability to activate complement via the alternative pathway. Again, the hydrophobic portion was associated with this function. These results, together with the finding that macrophages from TLR2-deficient mice did not produce TNF-alpha in response to M161Ag, infer that the N-terminal hydrophobic structure of M161Ag is important for TLR2-mediated cell activation and complement activation.


Subject(s)
Antigens, Bacterial/physiology , Drosophila Proteins , Lipoproteins/immunology , Macrophage Activation/immunology , Membrane Glycoproteins/physiology , Membrane Proteins/physiology , Mycoplasma fermentans/immunology , Peptide Fragments/immunology , Receptors, Cell Surface/physiology , Amino Acid Motifs , Amino Acid Sequence , Animals , Antigens, Bacterial/genetics , Antigens, Bacterial/metabolism , Bacterial Outer Membrane Proteins/immunology , Bacterial Outer Membrane Proteins/metabolism , Cell Line , Cells, Cultured , Complement C3/metabolism , Complement Pathway, Alternative/immunology , Humans , Lipoproteins/genetics , Lipoproteins/metabolism , Macrophages, Peritoneal/immunology , Membrane Proteins/genetics , Membrane Proteins/metabolism , Mice , Mice, Inbred C57BL , Molecular Sequence Data , Peptide Fragments/metabolism , Protein Sorting Signals/physiology , Recombinant Proteins/immunology , Recombinant Proteins/metabolism , Toll-Like Receptor 2 , Toll-Like Receptors
6.
FEMS Yeast Res ; 1(2): 151-60, 2001 Jul.
Article in English | MEDLINE | ID: mdl-12702360

ABSTRACT

Differences in glycosylation between the natural alpha-1,6 glucan-6-glucanohydrolase from Penicillium minioluteum and the heterologous protein expressed in the yeast Pichia pastoris were analyzed. Glycosylation profiling was carried out using fluorophore-assisted carbohydrate electrophoresis and amine absorption high-performance liquid chromatography (NH(2)-HPLC) in combination with matrix-assisted laser desorption-time of flight-mass spectrometry. Both microorganisms produce only oligomannosidic type structures, but the oligosaccharide population differs in both enzymes. The native enzyme has mainly short oligosaccharide chains ranging from Man(5)GlcNAc(2) to Man(9)GlcNAc(2), of which Man(8)GlcNAc(2) was the most represented oligosaccharide. The oligosaccharides linked to the protein produced in P. pastoris range from Man(7)GlcNAc(2) up to Man(14)GlcNAc(2), with Man(8)GlcNAc(2) and Man(9)GlcNAc(2) being the most abundant structures. In both enzymes the first glycosylation site (Asn(5)) is always glycosylated. However, Asn(537) and Asn(540) are only partially glycosylated in an alternate manner.


Subject(s)
Dextranase/genetics , Dextranase/metabolism , Penicillium/enzymology , Pichia/genetics , Amino Acid Sequence , Chromatography, High Pressure Liquid , Dextranase/chemistry , Glycosylation , Molecular Sequence Data , Penicillium/genetics , Pichia/enzymology , Sequence Analysis, DNA , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
7.
Rapid Commun Mass Spectrom ; 14(22): 2092-102, 2000.
Article in English | MEDLINE | ID: mdl-11114015

ABSTRACT

Spectra obtained by low-energy electrospray ionization tandem mass spectrometry (ESI-MS/MS) of 34 peptides containing aspartic acids at position n were studied and unambiguously differentiated. beta-Aspartic acid yields an internal rearrangement similar to that of the C-terminal rearrangements of protonated and cationized peptides. As a result of this rearrangement, two different ions containing the N- and the C-terminal ends of the original peptide are formed, namely, the bn-1 + H2O and y"l - n + 1 - 46 ions, respectively, where e is the number of amino acid residues in the peptide. The structure suggested for the y"l - n + 1 - 46 ion is identical to that proposed for the vn ions observed upon high-energy collision-induced dissociation (CID) experiments. The intensity of these ions in the low-energy MS/MS spectra is greatly influenced by the presence and position of basic amino acids within the sequences. Peptides with a basic amino acid residue at position n - 1 with respect to the beta-aspartic acid yield very intense bn-1 + H2O ions, while the y"l - n + 1 - 46 ion was observed mostly in tryptic peptides. Comparison between the high- and low-energy MS/MS spectra of several isopeptides suggests that a metastable fragmentation process is the main contributor to this rearrangement, whereas for long peptides (40 AA) CID plays a more important role. We also found that alpha-aspartic acid containing peptides yield the normal immonium ion at 88 Da, while peptides containing beta-aspartic acid yield an ion at m/z 70, and a mechanism to explain this phenomenon is proposed. Derivatizing isopeptides to form quaternary amines, and performing MS/MS on the sodium adducts of isopeptides, both improve the relative intensity of the bn + 1 + H2O ions. Based on the above findings, it was possible to determine the isomerization sites of two aged recombinant growth proteins.


Subject(s)
Aspartic Acid/analysis , Amino Acid Sequence , Aspartic Acid/chemistry , Hydrolysis , Molecular Sequence Data , Peptides/chemical synthesis , Peptides/chemistry , Spectrometry, Mass, Electrospray Ionization , Trypsin
8.
Nature ; 408(6811): 488-92, 2000 Nov 23.
Article in English | MEDLINE | ID: mdl-11100732

ABSTRACT

Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. Apg8/Aut7 is an essential factor for autophagy in yeast. We previously found that the carboxy-terminal arginine of nascent Apg8 is removed by Apg4/Aut2 protease, leaving a glycine residue at the C terminus. Apg8 is then converted to a form (Apg8-X) that is tightly bound to the membrane. Here we report a new mode of protein lipidation. Apg8 is covalently conjugated to phosphatidylethanolamine through an amide bond between the C-terminal glycine and the amino group of phosphatidylethanolamine. This lipidation is mediated by a ubiquitination-like system. Apg8 is a ubiquitin-like protein that is activated by an E1 protein, Apg7 (refs 7, 8), and is transferred subsequently to the E2 enzymes Apg3/Aut1 (ref. 9). Apg7 activates two different ubiquitin-like proteins, Apg12 (ref. 10) and Apg8, and assigns them to specific E2 enzymes, Apg10 (ref. 11) and Apg3, respectively. These reactions are necessary for the formation of Apg8-phosphatidylethanolamine. This lipidation has an essential role in membrane dynamics during autophagy.


Subject(s)
Microtubule-Associated Proteins/metabolism , Saccharomyces cerevisiae Proteins , Ubiquitins/metabolism , Amino Acid Sequence , Autophagy , Autophagy-Related Protein 12 , Autophagy-Related Protein 7 , Autophagy-Related Protein 8 Family , Autophagy-Related Proteins , Binding Sites , Cell Membrane/metabolism , Fungal Proteins/genetics , Fungal Proteins/metabolism , Microtubule-Associated Proteins/genetics , Molecular Sequence Data , Phosphatidylethanolamines/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Ubiquitin-Conjugating Enzymes
9.
Biochemistry ; 39(21): 6390-400, 2000 May 30.
Article in English | MEDLINE | ID: mdl-10828953

ABSTRACT

Oocytes of the starfish, Asterina pectinifera, are arrested at the G2 phase of meiosis I and possess a prominent germinal vesicle in which maternal stores of nuclear proteins which are destined for use primarily by the early embryo are stored. Germinal vesicle breakdown and subsequent oocyte maturation is triggered by activation of the p34(cdc2)/cyclin B complex, which is present as the preform in the cytoplasm. The aim of the present study was to identify and biochemically characterize in vivo substrates of the kinase. Two nucleic acid binding nuclear proteins designated NAAP1 and NAAP2 were found, both of which contain 345 amino acid residues with pI 3. 6 and which serve as substrates. The only difference between the two proteins was in the primary amino acid sequence at position 51, which is Asn in NAAP1 but Thr in NAAP2. NAAPs are phosphorylated in vivo during oocyte maturation but not at the meiotic G(2) stage. NAAPs are phosphorylated in vitro by the cdc2 kinase on the same site as in vivo. Although there are other evolutionarily conserved consensus sequences for phosphorylation by mitotically active cdc2 kinase in NAAPs and NAAP-derived fragments containing the sequences were efficiently phosphorylated in vitro, these sites in the intact NAAPs were not phosphorylated either in vivo or in vitro. These results suggest that the tertiary structure of NAAPs affects the target specificity of the cdc2 kinase.


Subject(s)
Nuclear Proteins/chemistry , Nuclear Proteins/metabolism , Oocytes/physiology , Amino Acid Sequence , Animals , CDC2 Protein Kinase/metabolism , Consensus Sequence , Conserved Sequence , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/isolation & purification , DNA-Binding Proteins/metabolism , Evolution, Molecular , Female , G2 Phase , Humans , Meiosis , Molecular Sequence Data , Nuclear Proteins/isolation & purification , Oocytes/cytology , Peptide Fragments/chemistry , Phosphorylation , Sea Urchins , Sequence Alignment , Sequence Homology, Amino Acid , Starfish , Xenopus laevis
10.
Electrophoresis ; 21(9): 1694-9, 2000 May.
Article in English | MEDLINE | ID: mdl-10870956

ABSTRACT

SeqMS, a software aid for de novo sequencing by tandem mass spectrometry (MS/MS), which was initially developed for the automated interpretation of high-energy collision-induced dissociation (CID) MS/MS spectra of peptides, has been applied to the interpretation of low-energy CID and post-source decay (PSD) spectra of peptides. Based on peptide backbone fragmented ions and their related ions, which are the dominant ions observed in the latter two techniques, the types of ions and their propensities to be observed have been optimized for efficient interpretation of the spectra. In a typical example, the modified SeqMS allowed the complete sequencing of a 31-amino acid synthetic peptide, except for the isobaric amino acids (Leu or Ile, and Lys or Gln), based on only the low-energy CID-MS/MS spectrum.


Subject(s)
Mass Spectrometry/methods , Sequence Analysis, Protein/methods , Software , Amino Acid Sequence , Animals , Electronic Data Processing , Molecular Sequence Data
11.
J Biol Chem ; 275(33): 25155-62, 2000 Aug 18.
Article in English | MEDLINE | ID: mdl-10827170

ABSTRACT

Guanylyl cyclase activating peptide II (GCAP-II), an endogenous ligand of guanylyl cyclase C, is produced via the processing of the precursor protein (prepro-GCAP-II). We have previously shown that the propeptide in pro-GCAP-II functions as an intramolecular chaperone in the proper folding of the mature peptide, GCAP-II (Hidaka, Y., Ohno, M., Hemmasi, B., Hill, O., Forssmann, W.-G., and Shimonishi, Y. (1998) Biochemistry 37, 8498-8507). Here, we report an essential region in pro-GCAP-II for the correct disulfide pairing of the mature peptide, GCAP-II. Five mutant proteins, in which amino acid residues were sequentially deleted from the N terminus, and three mutant proteins of pro-GCAP-II, in which N-terminal 6, 11, or 17 amino acid residues were deleted, were overproduced using Escherichia coli or human kidney 293T cells, respectively. Detailed analysis of in vivo or in vitro folding of these mutant proteins revealed that one or two amino acid residues at the N terminus of pro-GCAP-II are critical, not only for the chaperone function in the folding but also for the net stabilization of pro-GCAP-II. In addition, size exclusion chromatography revealed that pro-GCAP-II exists as a dimer in solution. These data indicate that the propeptide has two roles in proper folding: the disulfide-coupled folding of the mature region and the dimerization of pro-GCAP-II.


Subject(s)
Peptides/chemistry , Protein Precursors/chemistry , Amino Acid Sequence , Amino Acids/chemistry , Calcium-Binding Proteins/chemistry , Calcium-Binding Proteins/genetics , Cell Line , Chromatography, Gel , Chromatography, High Pressure Liquid , DNA, Complementary/metabolism , Dimerization , Disulfides/metabolism , Escherichia coli/metabolism , Gene Deletion , Guanylate Cyclase-Activating Proteins , Humans , Molecular Sequence Data , Mutation , Peptides/physiology , Protein Folding , Protein Precursors/genetics , Protein Precursors/physiology , Protein Sorting Signals/chemistry , Protein Structure, Secondary , Recombinant Proteins/metabolism , Serine Endopeptidases/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Time Factors
12.
Nature ; 404(6781): 999-1003, 2000 Apr 27.
Article in English | MEDLINE | ID: mdl-10801129

ABSTRACT

The Src family of protein tyrosine kinases (Src-PTKs) is important in the regulation of growth and differentiation of eukaryotic cells. The activity of Src-PTKs in cells of different types is negatively controlled by Csk, which specifically phosphorylates a conserved regulatory tyrosine residue at the carboxy-terminal tail of the Src-PTKs. Csk is mainly cytoplasmic and Src-PTKs are predominantly membrane-associated. This raises a question about the mechanism of interaction between these enzymes. Here we present Cbp--a transmembrane phosphoprotein that is ubiquitously expressed and binds specifically to the SH2 domain of Csk. Cbp is involved in the membrane localization of Csk and in the Csk-mediated inhibition of c-Src. In the plasma membrane Cbp is exclusively localized in the GM1 ganglioside-enriched detergent-insoluble membrane domain, which is important in receptor-mediated signalling. These findings reveal Cbp as a new component of the regulatory mechanism controlling the activity of membrane-associated Src-PTKs.


Subject(s)
Membrane Proteins/physiology , Phosphoproteins/physiology , src-Family Kinases/metabolism , Amino Acid Sequence , Animals , Brain/enzymology , Brain/metabolism , COS Cells , Cell Membrane/metabolism , Cloning, Molecular , DNA, Complementary , Enzyme Activation , Enzyme Activators , Escherichia coli , Membrane Proteins/genetics , Membrane Proteins/isolation & purification , Molecular Sequence Data , Phosphoproteins/genetics , Phosphoproteins/isolation & purification , Phosphorylation , Rats , Recombinant Fusion Proteins/metabolism , Sequence Homology, Amino Acid , Signal Transduction , Tissue Distribution , src Homology Domains
13.
J Am Soc Mass Spectrom ; 11(4): 345-51, 2000 Apr.
Article in English | MEDLINE | ID: mdl-10757171

ABSTRACT

C-terminal rearrangement ions [b(n-1) + H2O] (where n refers to the total number of residues of peptides) are frequently observed for peptides which contain basic amino acid(s), especially arginine, at or near their N termini in low- and high-energy collision-induced dissociation or post-source decay (PSD) spectra. Here we report a novel rearrangement, associated with PSD for serine- or threonine-containing peptides that are susceptible to C-terminal rearrangement. Based on PSD analyses of serine- or threonine-containing bradykinin and its analogs, which have been ethyl-esterified or 18O labeled at their C termini, the [b(k) + H2O] (where k denotes the position adjacent to the left of the Ser/Thr residue) ion is generally thought to be formed by the transfer of the hydroxyl moiety of a serine or threonine residue to the carbonyl group of the residue to its left accompanied by the loss of the remaining C-terminal portion of the peptide. When the Ser/Thr is at or near the C terminus, the present [b(k) + H2O] ion could be formed via two pathways, i.e., the Ser/Thr-related rearrangement and the conventional C-terminal rearrangement, which has been clearly verified by 18O labeling at the C terminus. In addition, the ions which are formally designated as [y(m)b(l) + H2O], where y(m)b(l) denotes a b-type internal ion, are also briefly described.


Subject(s)
Peptides/analysis , Bradykinin/analogs & derivatives , Bradykinin/analysis , Gas Chromatography-Mass Spectrometry , Oxygen Isotopes , Serine/analysis , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Threonine/analysis
14.
EMBO J ; 19(4): 521-30, 2000 Feb 15.
Article in English | MEDLINE | ID: mdl-10675321

ABSTRACT

The small GTPase Rho, which regulates a variety of cell functions, also serves as a specific substrate for bacterial toxins. Here we demonstrate that Bordetella dermonecrotizing toxin (DNT) catalyzes cross-linking of Rho with ubiquitous polyamines such as putrescine, spermidine and spermine. Mass spectrometric analyses revealed that the cross-link occurred at Gln63, which had been reported to be deamidated by DNT in the absence of polyamines. Rac1 and Cdc42, other members of the Rho family GTPases, were also polyaminated by DNT. The polyamination, like the deamidation, markedly reduced the GTPase activity of Rho without affecting its GTP-binding activity, indicating that polyaminated Rho behaves as a constitutively active analog. Moreover, polyamine-linked Rho, even in the GDP-bound form, associated more effectively with its effector ROCK than deamidated Rho in the GTP-bound form and, when microinjected into cells, induced the anomalous formation of stress fibers indistinguishable from those seen in DNT-treated cells. The results imply that the polyamine-linked Rho, transducing signals to downstream ROCK in a novel GTP-independent manner, plays an important role in DNT cell toxicity.


Subject(s)
Polyamines/metabolism , Transglutaminases , Virulence Factors, Bordetella , rho GTP-Binding Proteins/metabolism , 3T3 Cells , Actins/metabolism , Animals , Bacterial Toxins , Base Sequence , Bordetella bronchiseptica , Cross-Linking Reagents , DNA Primers/genetics , Enzyme Activation , Intracellular Signaling Peptides and Proteins , Mice , Models, Biological , Polyamines/chemistry , Protein Serine-Threonine Kinases/chemistry , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/metabolism , rho GTP-Binding Proteins/chemistry , rho-Associated Kinases , rhoA GTP-Binding Protein/chemistry , rhoA GTP-Binding Protein/metabolism
15.
Gene ; 260(1-2): 121-31, 2000 Dec 30.
Article in English | MEDLINE | ID: mdl-11137298

ABSTRACT

The protein invasin expressed on the cell surface of the pathogenic bacteria Yersinia pseudotuberculosis mediates the entry of this bacterium into cultured mammalian cells. We have developed a system for expression of random peptides on the cell surface of Escherichia coli (E. coli) by creation of a fusion hybrid between a peptide and the invasin protein. The fusion protein constructs consist of part of the outer membrane domain of the invasin protein, six proline spacers, and a decamer of random peptides flanked by cysteine residues (CX(10)C). Peptides were constitutively expressed on the cell surface in the resulting random decamer peptide library, which we designated as ESPEL (E. coli Surface Peptide Expression Library). The ESPEL was systematically screened for its binding affinity toward human cultured cells. Several bacterial clones were identified whose binding to human cells was mediated by peptides expressed on the bacterial cell surface. Flow cytometric analysis showed that both the identified bacterial clones and these corresponding chemically synthesized peptides bound to human cells specifically. The techniques described provide a new method that uses E. coli random peptide library to select targeting peptides for mammalian cells without any knowledge of the human cellular receptors.


Subject(s)
Adhesins, Bacterial , Bacterial Proteins/metabolism , Escherichia coli/metabolism , Peptides/metabolism , Amino Acid Sequence , Bacterial Proteins/genetics , Binding, Competitive , Cell Line, Transformed , Escherichia coli/cytology , Escherichia coli/genetics , Gene Expression , Humans , Membrane Proteins/genetics , Membrane Proteins/metabolism , Oligopeptides/genetics , Oligopeptides/metabolism , Peptide Library , Peptides/genetics , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Yersinia pseudotuberculosis/genetics
16.
Ann Nucl Med ; 13(4): 273-6, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10510886

ABSTRACT

We report a case of bronchogenic carcinoma with atelectasis studied by T1-SPECT and FDG-PET. In the carcinoma, abnormally high uptake of T1 and FDG were detected, but in the region of atelectasis, an abnormally high uptake of T1 with a relatively low uptake of FDG were observed. On quantitative analyses, the T1 retention indexes of the tumor and atelectasis were 29.7 and 42.0. The mean SUVs of FDG of the tumor and the atelectasis were 8.92 and 1.28. T1-SPECT could not distinguish the atelectasis from the carcinoma. FDG-PET was superior to T1-SPECT in this case in detecting malignancy and distinguishing it from atelectasis.


Subject(s)
Carcinoma, Bronchogenic/diagnostic imaging , Fluorodeoxyglucose F18/pharmacokinetics , Lung Neoplasms/diagnostic imaging , Pulmonary Atelectasis/diagnostic imaging , Radiopharmaceuticals/pharmacokinetics , Thallium Radioisotopes/pharmacokinetics , Biological Transport , Carcinoma, Bronchogenic/complications , Carcinoma, Bronchogenic/surgery , Humans , Lung Neoplasms/complications , Lung Neoplasms/surgery , Male , Middle Aged , Pulmonary Atelectasis/etiology , Tomography, Emission-Computed , Tomography, Emission-Computed, Single-Photon , Tomography, X-Ray Computed
17.
J Biol Chem ; 274(44): 31713-8, 1999 Oct 29.
Article in English | MEDLINE | ID: mdl-10531382

ABSTRACT

Guanylyl cyclase C, one of the family of membrane-bound guanylyl cyclases, consists of an extracellular domain and an intracellular domain, which are connected by a single transmembrane polypeptide. The extracellular domain binds unique small polypeptides with high specificity, which include the endogenous peptide hormones, guanylin and uroguanylin, as well as an exogenous enterotoxigenic peptide, heat-stable enterotoxin, secreted by pathogenic Escherichia coli. Information on this specific binding is propagated into the intracellular domain, followed by the synthesis of cGMP, a second messenger that regulates a variety of intracellular physiological processes. This study reports the design of a photoaffinity labeled analog of heat-stable enterotoxin (biotinyl-(AC(5))(2)-[Gly(4), Pap(11)]STp(4-17)), which incorporates a Pap residue (p-azidophenylalanine) at position 11 and a biotin moiety at the N terminus, and the use of this analog to determine the ligand-binding region of the extracellular domain of guanylyl cyclase C. The endoproteinase Lys-C digestion of the extracellular domain, which was covalently labeled by this ligand, and mass spectrometric analyses of the digest revealed that the ligand specifically binds to the region (residue 387 to residue 393) of guanylyl cyclase C. This region is localized close to the transmembrane portion of guanylyl cyclase C on the external cellular surface. This result was further confirmed by characterization of site-directed mutants of guanylyl cyclase C in which each amino acid residue was substituted by an Ala residue instead of residues normally located in the region. This experiment provides the first direct demonstration of the ligand-binding site of guanylyl cyclase C and will contribute toward an understanding of the receptor recognition of a ligand and the modeling of the interaction of the receptor and its ligand at the molecular level.


Subject(s)
Bacterial Toxins/metabolism , Enterotoxins/metabolism , Guanylate Cyclase/metabolism , Receptors, Peptide/metabolism , Animals , Bacterial Toxins/chemistry , Binding Sites , Biotinylation , Cell Polarity , Cyclic GMP/metabolism , Enterotoxins/chemistry , Escherichia coli Proteins , Guanylate Cyclase/genetics , Ligands , Mutagenesis, Site-Directed , Peptide Mapping , Photoaffinity Labels , Protein Binding , Protein Structure, Secondary , Receptors, Enterotoxin , Receptors, Guanylate Cyclase-Coupled , Receptors, Peptide/genetics , Species Specificity , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Swine
18.
Protein Sci ; 8(9): 1850-9, 1999 Sep.
Article in English | MEDLINE | ID: mdl-10493586

ABSTRACT

Guanylin is a guanylyl cyclase (GC)-activating peptide that is mainly secreted as the corresponding prohormone of 94 amino acid residues. In this study, we show that the originally isolated 15-residue guanylin, representing the COOH-terminal part of the prohormone, is released from the prohormone by cleavage of an Asp-Pro amide bond under conditions applied during the isolation procedures. Thus, the 15-residue guanylin is probably a non-native, chemically induced GC-activating peptide. This guanylin molecule contains two disulfide bonds that are absolutely necessary for receptor activation. We demonstrate that the folding of the reduced 15-residue guanylin results almost completely in the formation of the two inactive disulfide isomers. In contrast, the reduced form of proguanylin containing the entire prosequence folds to a product with the native cysteine connectivity. Because proguanylin lacking the 31 NH2-terminal residues of the prosequence folds only to a minor extent to guanylin with the native disulfide bonds, it is evident that this NH2-terminal region contributes significantly to the correct disulfide-coupled folding. Structural studies using CD and NMR spectroscopy show that native proguanylin contains a considerable amount of alpha-helical and, to a lesser extent, beta-sheet structural elements. In addition, a close proximity of the NH2- and the COOH-terminal regions was found by NOESY. It appears that this interaction is important for the constitution of the correct conformation and provides an explanation of the minor guanylyl cyclase activity of proguanylin by shielding the bioactive COOH-terminal domain from the receptor.


Subject(s)
Gastrointestinal Hormones , Peptides/chemistry , Protein Precursors/chemistry , Amino Acid Sequence , Circular Dichroism , Enzyme Activators/chemistry , Guanylate Cyclase/metabolism , Humans , Kidney Failure, Chronic , Molecular Sequence Data , Natriuretic Peptides , Nuclear Magnetic Resonance, Biomolecular , Oxidation-Reduction , Peptides/metabolism , Peptides/physiology , Protein Folding , Protein Precursors/metabolism , Protein Precursors/physiology , Protein Structure, Secondary
19.
Anal Chem ; 71(18): 4100-6, 1999 Sep 15.
Article in English | MEDLINE | ID: mdl-10500493

ABSTRACT

Oligosaccharides released from several glycoproteins were derivatized with either 4-aminobenzoic acid 2-(diethylamino)ethyl ester (ABDEAE) (Yoshino, K.; et al. Anal. Chem. 1995, 67, 4028-4031) or 2-aminopyridine. The resulting derivatives were analyzed on a nanoflow electrospray ionization (ESI) quadrupole-inlet time-of-flight mass spectrometer using the low-energy collision-induced dissociation technique. In the MS/MS spectra, the oxonium (b or internal series) and y series ions, which are derived from the multiply charged precursor ions, were predominant and were used for the structural readout. Some oxonium ions that were observed in the low-mass region, but that were not found in the PSD analyses (Mo, W.; et al. Anal. Chem. 1998, 70, 4520-4526), rendered a more detailed structural insight. The oxonium ions at m/z 512.2, which are derived from the fucosylated oligosaccharides of immunoglobulin Y and thyroglobulin, were observed, suggesting that fucosylation had occurred proximal to the outer nonreducing terminus. In addition, the data herein show that structural elucidation can be routinely achieved at a low sample concentration. For the case of ABDEAE derivatives, this can be achieved at the 50 fmol/microL level and with the actual sample consumption at the attomole level using nanoflow ESI MS/MS.


Subject(s)
Oligosaccharides/analysis , Aminopyridines/chemistry , Carbohydrate Sequence , Immunoglobulins/analysis , Immunoglobulins/chemistry , Mass Spectrometry/methods , Molecular Sequence Data , Oligosaccharides/chemistry , Procaine/chemistry , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Thyroglobulin/analysis , Thyroglobulin/chemistry , Transferrin/analysis , Transferrin/chemistry
20.
Eur J Biochem ; 263(2): 338-46, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10406940

ABSTRACT

The role of carbohydrate moieties at the N-linked glycosylation sites of guanylate cyclase C (GC-C), a receptor protein for guanylin, uroguanylin and heat-stable enterotoxin, in ligand binding and structural stability was examined using site-directed mutagenesis of the putative N-linked glycosylation sites in the extracellular domain (ECD) of porcine GC-C. For this purpose, eight mutant proteins of ECD (N9A, N20A, N56A, N172A, N261A, N284A, N334A and N379A) and six mutant proteins of the complete GC-C (N9A, S11A, N172A, T174A, N379A and T381A) were prepared, in which Ala replaced Asn, Ser and Thr at the N-linked glycosylation consensus sites. All the mutant proteins showed a ligand-binding affinity (K(d)) similar to those of the wild-type proteins, although the deletion of a carbohydrate moiety at each of the N-linked glycosylation sites affected the ligand-binding ability of ECD or GC-C to some degree. However, the mutant proteins of ECD (N379A) and GC-C (N379A and T381A) showed considerably decreased binding ability in the context of maximum capacity (B(max)) to a ligand, despite the fact that the expression levels of these mutant proteins were nearly the same as the wild-type proteins. Moreover, the mutant protein of ECD (N379A) was considerably less stable to a denaturant. These results clearly indicate a crucial role for the carbohydrate moiety at N379, which is located near the transmembrane region, in structural stability, the ability to bind to a ligand and the cyclase catalytic activity of GC-C, and provide a route for the elucidation of the mechanism of the interaction between GC-C and a ligand.


Subject(s)
Guanylate Cyclase/metabolism , Receptors, Peptide/metabolism , Amino Acid Sequence , Bacterial Toxins/chemistry , Baculoviridae/chemistry , Cell Line , Cyclic GMP/metabolism , Databases, Factual , Dose-Response Relationship, Drug , Enterotoxins/chemistry , Escherichia coli Proteins , Glycosylation , Humans , Kinetics , Ligands , Molecular Sequence Data , Mutagenesis , Protein Binding , Receptors, Enterotoxin , Receptors, Guanylate Cyclase-Coupled , Recombinant Proteins/chemistry , Sequence Homology, Amino Acid , Urea/pharmacology
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