Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 23
Filter
Add more filters










Publication year range
1.
iScience ; 26(6): 106997, 2023 Jun 16.
Article in English | MEDLINE | ID: mdl-37378316

ABSTRACT

Diabetic peripheral neuropathy (DPN) is the most common chronic, progressive complication of diabetes mellitus. The main symptom is sensory loss; the molecular mechanisms are not fully understood. We found that Drosophila fed a high-sugar diet, which induces diabetes-like phenotypes, exhibit impairment of noxious heat avoidance. The impairment of heat avoidance was associated with shrinkage of the leg neurons expressing the Drosophila transient receptor potential channel Painless. Using a candidate genetic screening approach, we identified proteasome modulator 9 as one of the modulators of impairment of heat avoidance. We further showed that proteasome inhibition in the glia reversed the impairment of noxious heat avoidance, and heat-shock proteins and endolysosomal trafficking in the glia mediated the effect of proteasome inhibition. Our results establish Drosophila as a useful system for exploring molecular mechanisms of diet-induced peripheral neuropathy and propose that the glial proteasome is one of the candidate therapeutic targets for DPN.

2.
Nat Commun ; 13(1): 7857, 2022 12 21.
Article in English | MEDLINE | ID: mdl-36543799

ABSTRACT

Protein modification by ubiquitin-like proteins (UBLs) amplifies limited genome information and regulates diverse cellular processes, including translation, autophagy and antiviral pathways. Ubiquitin-fold modifier 1 (UFM1) is a UBL covalently conjugated with intracellular proteins through ufmylation, a reaction analogous to ubiquitylation. Ufmylation is involved in processes such as endoplasmic reticulum (ER)-associated protein degradation, ribosome-associated protein quality control at the ER and ER-phagy. However, it remains unclear how ufmylation regulates such distinct ER-related functions. Here we identify a UFM1 substrate, NADH-cytochrome b5 reductase 3 (CYB5R3), that localizes on the ER membrane. Ufmylation of CYB5R3 depends on the E3 components UFL1 and UFBP1 on the ER, and converts CYB5R3 into its inactive form. Ufmylated CYB5R3 is recognized by UFBP1 through the UFM1-interacting motif, which plays an important role in the further uyfmylation of CYB5R3. Ufmylated CYB5R3 is degraded in lysosomes, which depends on the autophagy-related protein Atg7- and the autophagy-adaptor protein CDK5RAP3. Mutations of CYB5R3 and genes involved in the UFM1 system cause hereditary developmental disorders, and ufmylation-defective Cyb5r3 knock-in mice exhibit microcephaly. Our results indicate that CYB5R3 ufmylation induces ER-phagy, which is indispensable for brain development.


Subject(s)
Autophagy , Cytochrome-B(5) Reductase , Endoplasmic Reticulum , Ubiquitins , Animals , Mice , Autophagy/physiology , Cell Cycle Proteins/metabolism , Cytochrome-B(5) Reductase/chemistry , Cytochrome-B(5) Reductase/metabolism , Endoplasmic Reticulum/metabolism , Protein Processing, Post-Translational , Ubiquitination/physiology , Ubiquitins/chemistry , Ubiquitins/metabolism
3.
Biochim Biophys Acta Mol Cell Res ; 1869(3): 119188, 2022 03.
Article in English | MEDLINE | ID: mdl-34906616

ABSTRACT

Calpain-10 (CAPN10) belongs to the calpain superfamily. Genetic polymorphisms of the CAPN10 gene are associated with susceptibility to develop type 2 diabetes mellitus. Although the role of CAPN10 in the pathophysiology of diabetes has been extensively investigated, its biochemical properties are largely unknown. In this report, we made the surprising discovery that CAPN10 cDNA transcripts are subject to cryptic splicing and unexpected protein products were expressed. The same set of splicing products was reproducibly detected in four types of cultured cells including the primary culture of mouse myoblast. At least, one of the products was identical to a natural splicing variant. Sequence analysis of the splicing potential of CAPN10 cDNA, together with mutagenesis studies, resulted in the identification of a powerful splicing acceptor site at the junction of the sequences encoded by exons 9 and 10. We successfully extended the analysis to create expression construct resistant to splicing for both human and mouse CAPN10. The construct allowed us to analyze two major CAPN10 isoforms and reveal their difference in substrate proteolysis and potential cell functions. These results demonstrate that proteins produced from cDNA do not necessarily reflect the original nucleotide sequence. We provide insight into the property of recombinantly expressed CAPN10 proteins in cultured cells circumventing unexpected protein products.


Subject(s)
Alternative Splicing , Calpain/genetics , Calpain/metabolism , Gene Expression Regulation , Animals , Humans , Male , Mice , Mice, Inbred C57BL , Protein Isoforms , Rats , Rats, Wistar
4.
Nucleic Acids Res ; 49(7): e40, 2021 04 19.
Article in English | MEDLINE | ID: mdl-33503245

ABSTRACT

Generation of conditional knockout (cKO) and various gene-modified cells is laborious and time-consuming. Here, we established an all-in-one cKO system, which enables highly efficient generation of cKO cells and simultaneous gene modifications, including epitope tagging and reporter gene knock-in. We applied this system to mouse embryonic stem cells (ESCs) and generated RNA helicase Ddx1 cKO ESCs. The targeted cells displayed endogenous promoter-driven EGFP and FLAG-tagged DDX1 expression, and they were converted to Ddx1 KO via FLP recombinase. We further established TetFE ESCs, which carried a reverse tetracycline transactivator (rtTA) expression cassette and a tetracycline response element (TRE)-regulated FLPERT2 cassette in the Gt(ROSA26)Sor locus for instant and tightly regulated induction of gene KO. By utilizing TetFE Ddx1F/F ESCs, we isolated highly pure Ddx1F/F and Ddx1-/- ESCs and found that loss of Ddx1 caused rRNA processing defects, thereby activating the ribosome stress-p53 pathway. We also demonstrated cKO of various genes in ESCs and homologous recombination-non-proficient human HT1080 cells. The frequency of cKO clones was remarkably high for both cell types and reached up to 96% when EGFP-positive clones were analyzed. This all-in-one cKO system will be a powerful tool for rapid and precise analyses of gene functions.


Subject(s)
DEAD-box RNA Helicases/metabolism , Gene Knockout Techniques/methods , RNA, Ribosomal/metabolism , Animals , Cell Line , Embryonic Stem Cells , Fibroblasts , Gene Expression , Gene Knock-In Techniques , Humans , Mice , Mice, Inbred C57BL , RNA Processing, Post-Transcriptional , Ribosomes/metabolism
5.
Biosci Rep ; 40(11)2020 11 27.
Article in English | MEDLINE | ID: mdl-33078830

ABSTRACT

Calpain-1 and calpain-2 are highly structurally similar isoforms of calpain. The calpains, a family of intracellular cysteine proteases, cleave their substrates at specific sites, thus modifying their properties such as function or activity. These isoforms have long been considered to function in a redundant or complementary manner, as they are both ubiquitously expressed and activated in a Ca2+- dependent manner. However, studies using isoform-specific knockout and knockdown strategies revealed that each calpain species carries out specific functions in vivo. To understand the mechanisms that differentiate calpain-1 and calpain-2, we focused on the efficiency and longevity of each calpain species after activation. Using an in vitro proteolysis assay of troponin T in combination with mass spectrometry, we revealed distinctive aspects of each isoform. Proteolysis mediated by calpain-1 was more sustained, lasting as long as several hours, whereas proteolysis mediated by calpain-2 was quickly blunted. Calpain-1 and calpain-2 also differed from each other in their patterns of autolysis. Calpain-2-specific autolysis sites in its PC1 domain are not cleaved by calpain-1, but calpain-2 cuts calpain-1 at the corresponding position. Moreover, at least in vitro, calpain-1 and calpain-2 do not perform substrate proteolysis in a synergistic manner. On the contrary, calpain-1 activity is suppressed in the presence of calpain-2, possibly because it is cleaved by the latter protein. These results suggest that calpain-2 functions as a down-regulation of calpain-1, a mechanism that may be applicable to other calpain species as well.


Subject(s)
Calpain/metabolism , Troponin T/metabolism , Autolysis , Calpain/genetics , Enzyme Activation , Enzyme Stability , HCT116 Cells , HEK293 Cells , HeLa Cells , Humans , Proteolysis , Substrate Specificity , Time Factors
6.
FASEB J ; 34(2): 3197-3208, 2020 02.
Article in English | MEDLINE | ID: mdl-31909857

ABSTRACT

Nuclear factor of activated T cells (NFAT) leads to the transcription of diverse inducible genes involved in many biological processes; therefore, aberrant NFAT expression is responsible for the development and exacerbation of various disorders. Since five isoforms of NFAT (NFATc1-c4, NFAT5) exhibit distinct and overlapping functions, selective control of a part, but not all, of NFAT family members is desirable. By comparing the binding activity of each NFATc1-c4 with its regulatory enzyme, calcineurin (CN), using a quantitative immunoprecipitation assay, we found a new CN-binding region (CNBR) selectively functioning in NFATc1 and NFATc4. This region, termed CNBR3, is located between two preexisting CNBR1 and CNBR2, within the Ca2+ regulatory domain. The nuclear translocation of NFATc1 but not NFATc2 in T cells was suppressed by ectopic expression of CNBR3 and, accordingly, NFATc1-dependent cytokine expression was downregulated. Through competition assays using NFATc1-derived partial peptides and mass spectrometry with photoaffinity technology, we identified 18 amino acids in NFATc1 (Arg258 to Pro275 ) and 13 amino acids in CN catalytic subunit (CNA) (Asn77 to Gly89 ) responsible for CNA/CNBR3 binding in which Cys263 and Asp82 , respectively, played crucial roles. The possible selective regulation of NFAT-mediated biological processes by targeting this new CN/NFAT-binding region is suggested.


Subject(s)
Calcineurin/chemistry , Molecular Docking Simulation , NFATC Transcription Factors/chemistry , Animals , Binding Sites , Calcineurin/genetics , Calcineurin/metabolism , Cell Line , Cricetinae , Cricetulus , Humans , Jurkat Cells , NFATC Transcription Factors/genetics , NFATC Transcription Factors/metabolism , Protein Binding
7.
Sci Rep ; 9(1): 18622, 2019 12 09.
Article in English | MEDLINE | ID: mdl-31819079

ABSTRACT

The conserved serine-threonine kinase, Cdc7, plays a crucial role in initiation of DNA replication by facilitating the assembly of an initiation complex. Cdc7 is expressed at a high level and exhibits significant kinase activity not only during S-phase but also during G2/M-phases. A conserved mitotic kinase, Aurora B, is activated during M-phase by association with INCENP, forming the chromosome passenger complex with Borealin and Survivin. We show that Cdc7 phosphorylates and stimulates Aurora B kinase activity in vitro. We identified threonine-236 as a critical phosphorylation site on Aurora B that could be a target of Cdc7 or could be an autophosphorylation site stimulated by Cdc7-mediated phosphorylation elsewhere. We found that threonines at both 232 (that has been identified as an autophosphorylation site) and 236 are essential for the kinase activity of Aurora B. Cdc7 down regulation or inhibition reduced Aurora B activity in vivo and led to retarded M-phase progression. SAC imposed by paclitaxel was dramatically reversed by Cdc7 inhibition, similar to the effect of Aurora B inhibition under the similar situation. Our data show that Cdc7 contributes to M-phase progression and to spindle assembly checkpoint most likely through Aurora B activation.


Subject(s)
Aurora Kinase B/metabolism , Cell Cycle Proteins/metabolism , Protein Serine-Threonine Kinases/metabolism , Survivin/metabolism , Threonine/chemistry , Animals , Cell Cycle , Cell Division , Cell Line, Tumor , Centromere/metabolism , Chromosomal Proteins, Non-Histone/metabolism , HCT116 Cells , HEK293 Cells , HeLa Cells , Humans , Insecta , Mitosis , Mutation , Phosphorylation , Rats , Spindle Apparatus/metabolism
8.
Gan To Kagaku Ryoho ; 46(Suppl 1): 66-68, 2019 May.
Article in Japanese | MEDLINE | ID: mdl-31189858

ABSTRACT

A questionnaire survey was administered to determine the status of medical assistance techniques in practice and experiences of problems in home-visit nursing.The frequencies of practice in and problems with the exchange and management of indwelling bladder catheters were the highest, whereas those of peritoneal dialysis and cancer chemotherapy were low, despite the difficulty level of practice being high.Many nurses feel anxious about judgment and practice in home-visit nursing, suggesting the necessity for measures to eliminate disparities in the regional home-visit nursing system and to improve homevisit nursing.


Subject(s)
Home Nursing , House Calls , Humans , Surveys and Questionnaires
10.
Elife ; 82019 12 31.
Article in English | MEDLINE | ID: mdl-31889509

ABSTRACT

Replication checkpoint is essential for maintaining genome integrity in response to various replication stresses as well as during the normal growth. The evolutionally conserved ATR-Claspin-Chk1 pathway is induced during replication checkpoint activation. Cdc7 kinase, required for initiation of DNA replication at replication origins, has been implicated in checkpoint activation but how it is involved in this pathway has not been known. Here, we show that Cdc7 is required for Claspin-Chk1 interaction in human cancer cells by phosphorylating CKBD (Chk1-binding-domain) of Claspin. The residual Chk1 activation in Cdc7-depleted cells is lost upon further depletion of casein kinase1 (CK1γ1), previously reported to phosphorylate CKBD. Thus, Cdc7, in conjunction with CK1γ1, facilitates the interaction between Claspin and Chk1 through phosphorylating CKBD. We also show that, whereas Cdc7 is predominantly responsible for CKBD phosphorylation in cancer cells, CK1γ1 plays a major role in non-cancer cells, providing rationale for targeting Cdc7 for cancer cell-specific cell killing.


Subject(s)
Adaptor Proteins, Signal Transducing/genetics , Cell Cycle Proteins/genetics , Checkpoint Kinase 1/genetics , DNA Replication/genetics , Protein Serine-Threonine Kinases/genetics , Ataxia Telangiectasia Mutated Proteins/genetics , HeLa Cells , Humans , Neoplasms/genetics , Phosphorylation/genetics , Protein Binding/genetics , Protein Domains/genetics
11.
Cell Cycle ; 15(9): 1213-26, 2016 05 02.
Article in English | MEDLINE | ID: mdl-26940553

ABSTRACT

All organisms ensure once and only once replication during S phase through a process called replication licensing. Cdt1 is a key component and crucial loading factor of Mcm complex, which is a central component for the eukaryotic replicative helicase. In higher eukaryotes, timely inhibition of Cdt1 by Geminin is essential to prevent rereplication. Here, we address the mechanism of DNA licensing using purified Cdt1, Mcm and Geminin proteins in combination with replication in Xenopus egg extracts. We mutagenized the 223th arginine of mouse Cdt1 (mCdt1) to cysteine or serine (R-S or R-C, respectively) and 342nd and 346th arginines constituting an arginine finger-like structure to alanine (RR-AA). The RR-AA mutant of Cdt1 could not only rescue the DNA replication activity in Cdt1-depleted extracts but also its specific activity for DNA replication and licensing was significantly increased compared to the wild-type protein. In contrast, the R223 mutants were partially defective in rescue of DNA replication and licensing. Biochemical analyses of these mutant Cdt1 proteins indicated that the RR-AA mutation disabled its functional interaction with Geminin, while R223 mutations resulted in ablation in interaction with the Mcm2∼7 complex. Intriguingly, the R223 mutants are more susceptible to the phosphorylation-induced inactivation or chromatin dissociation. Our results show that conserved arginine residues play critical roles in interaction with Geminin and Mcm that are crucial for proper conformation of the complexes and its licensing activity.


Subject(s)
Arginine/metabolism , Cell Cycle Proteins/metabolism , Conserved Sequence , DNA Replication , DNA-Binding Proteins/metabolism , Geminin/metabolism , Minichromosome Maintenance Proteins/metabolism , Xenopus Proteins/metabolism , Amino Acid Substitution , Animals , Cell Cycle Proteins/genetics , DNA/metabolism , DNA Helicases/metabolism , DNA-Binding Proteins/genetics , Mice , Mutant Proteins/metabolism , Mutation/genetics , Phosphorylation , Protein Binding , Recombinant Proteins/isolation & purification , Structure-Activity Relationship , Xenopus Proteins/genetics , Xenopus laevis
12.
Mol Cell Proteomics ; 15(4): 1262-80, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26796116

ABSTRACT

Calpains are intracellular Ca(2+)-regulated cysteine proteases that are essential for various cellular functions. Mammalian conventional calpains (calpain-1 and calpain-2) modulate the structure and function of their substrates by limited proteolysis. Thus, it is critically important to determine the site(s) in proteins at which calpains cleave. However, the calpains' substrate specificity remains unclear, because the amino acid (aa) sequences around their cleavage sites are very diverse. To clarify calpains' substrate specificities, 84 20-mer oligopeptides, corresponding to P10-P10' of reported cleavage site sequences, were proteolyzed by calpains, and the catalytic efficiencies (kcat/Km) were globally determined by LC/MS. This analysis revealed 483 cleavage site sequences, including 360 novel ones. Thekcat/Kms for 119 sites ranged from 12.5-1,710 M(-1)s(-1) Although most sites were cleaved by both calpain-1 and -2 with a similarkcat/Km, sequence comparisons revealed distinct aa preferences at P9-P7/P2/P5'. The aa compositions of the novel sites were not statistically different from those of previously reported sites as a whole, suggesting calpains have a strict implicit rule for sequence specificity, and that the limited proteolysis of intact substrates is because of substrates' higher-order structures. Cleavage position frequencies indicated that longer sequences N-terminal to the cleavage site (P-sites) were preferred for proteolysis over C-terminal (P'-sites). Quantitative structure-activity relationship (QSAR) analyses using partial least-squares regression and >1,300 aa descriptors achievedkcat/Kmprediction withr= 0.834, and binary-QSAR modeling attained an 87.5% positive prediction value for 132 reported calpain cleavage sites independent of our model construction. These results outperformed previous calpain cleavage predictors, and revealed the importance of the P2, P3', and P4' sites, and P1-P2 cooperativity. Furthermore, using our binary-QSAR model, novel cleavage sites in myoglobin were identified, verifying our predictor. This study increases our understanding of calpain substrate specificities, and opens calpains to "next-generation,"i.e.activity-related quantitative and cooperativity-dependent analyses.


Subject(s)
Calpain/chemistry , Chromatography, Liquid/methods , Mass Spectrometry/methods , Oligopeptides/chemistry , Oligopeptides/metabolism , Amino Acid Sequence , Animals , Binding Sites , Catalysis , Humans , Models, Molecular , Proteolysis , Quantitative Structure-Activity Relationship , Substrate Specificity
13.
Proc Natl Acad Sci U S A ; 112(15): 4630-5, 2015 Apr 14.
Article in English | MEDLINE | ID: mdl-25827227

ABSTRACT

The identification of substrates for ubiquitin ligases has remained challenging, because most substrates are either immediately degraded by the proteasome or processed by deubiquitinating enzymes (DUBs) to remove polyubiquitin. Although a methodology that enables detection of ubiquitinated proteins using ubiquitin Lys-ε-Gly-Gly (diGly) remnant antibodies and MS has been developed, it is still insufficient for identification and characterization of the ubiquitin-modified proteome in cells overexpressing a particular ubiquitin ligase. Here, we show that exogenously expressed trypsin-resistant tandem ubiquitin-binding entity(ies) (TR-TUBE) protect polyubiquitin chains on substrates from DUBs and circumvent proteasome-mediated degradation in cells. TR-TUBE effectively associated with substrates ubiquitinated by an exogenously overexpressed ubiquitin ligase, allowing detection of the specific activity of the ubiquitin ligase and isolation of its substrates. Although the diGly antibody enabled effective identification of ubiquitinated proteins in cells, overexpression of an ubiquitin ligase and treatment with a proteasome inhibitor did not increase the level of diGly peptides specific for the ligase relative to the background level of diGly peptides, probably due to deubiquitination. By contrast, in TR-TUBE-expressing cells, the level of substrate-derived diGly peptides produced by the overexpressed ubiquitin ligase was significantly elevated. We developed a method for identifying the substrates of specific ubiquitin ligases using two enrichment strategies, TR-TUBE and diGly remnant antibodies, coupled with MS. Using this method, we identified target substrates of FBXO21, an uncharacterized F-box protein.


Subject(s)
Ubiquitin-Protein Ligases/metabolism , Ubiquitin/metabolism , Ubiquitinated Proteins/metabolism , Ubiquitination , Amino Acid Sequence , Antibodies/immunology , Base Sequence , F-Box Proteins/genetics , F-Box Proteins/immunology , F-Box Proteins/metabolism , Glycine/genetics , Glycine/metabolism , HEK293 Cells , Humans , Immunoblotting/methods , Immunoprecipitation/methods , Lysine/genetics , Lysine/metabolism , Molecular Sequence Data , Oligopeptides/genetics , Oligopeptides/immunology , Oligopeptides/metabolism , Protein Binding/immunology , Proteome/genetics , Proteome/immunology , Proteome/metabolism , Proteomics , Reproducibility of Results , Substrate Specificity , Tandem Mass Spectrometry/methods , Trypsin/genetics , Trypsin/metabolism , Ubiquitin/genetics , Ubiquitin/immunology , Ubiquitin-Protein Ligases/genetics , Ubiquitinated Proteins/genetics
14.
Proc Natl Acad Sci U S A ; 111(51): E5527-36, 2014 Dec 23.
Article in English | MEDLINE | ID: mdl-25512505

ABSTRACT

CAPN3/p94/calpain-3, a calpain protease family member predominantly expressed in skeletal muscle, possesses unusually rapid and exhaustive autolytic activity. Mutations in the human CAPN3 gene impairing its protease functions cause limb-girdle muscular dystrophy type 2A (LGMD2A); yet, the connection between CAPN3's autolytic activity and the enzyme's function in vivo remain unclear. Here, we demonstrated that CAPN3 protease activity was reconstituted by intermolecular complementation (iMOC) between its two autolytic fragments. Furthermore, the activity of full-length CAPN3 active-site mutants was surprisingly rescued through iMOC with autolytic fragments containing WT amino acid sequences. These results provide evidence that WT CAPN3 can be formed by the iMOC of two different complementary CAPN3 mutants. The finding of iMOC-mediated restoration of calpain activity indicates a novel mechanism for the genotype-phenotype links in LGMD2A.


Subject(s)
Calpain/metabolism , Muscle Proteins/metabolism , Animals , COS Cells , Calpain/chemistry , Calpain/genetics , Chlorocebus aethiops , Humans , Muscle Proteins/chemistry , Muscle Proteins/genetics , Mutation , Proteolysis
15.
FEBS J ; 275(3): 470-80, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18167143

ABSTRACT

The radical scavenger 2,2,6,6-tetramethylpiperidinyl-1-oxy (TEMPO(*)) and the spin trap 5,5-dimethyl-1-pyrroline-N-oxide (DMPO) were used in conjunction with mass spectrometry to identify the protein-based radical sites of the H(2)O(2)-tolerant ascorbate peroxidase (APX) of the red alga Galdieria partita and the H(2)O(2)-sensitive stromal APX of tobacco. A cysteine residue in the vicinity of the propionate side chain of heme in both enzymes was labeled with TEMPO(*) and DMPO in an H(2)O(2)-dependent manner, indicating that these cysteine residues form thiyl radicals through interaction of APX with H(2)O(2). TEMPO(*) bound to the cysteine thiyl radicals, and sulfinylated and sulfonylated them. Other oxidized cysteine residues were found in both APXs. Experiments with a cysteine-to-serine point mutation showed that formation of TEMPO adducts and subsequent oxidation of the cysteine residue located near the propionate group of heme leads to loss of enzyme activity, in particular in the Galdieria APX. When treated with glutathione and H(2)O(2), both cysteine residues in both enzymes were glutathionylated. These results suggest that, under oxidative stress in vivo, cysteine oxidation is involved in the inactivation of APXs in addition to the proposed H(2)O(2)-mediated crosslinking of heme to the distal tryptophan residue [Kitajima S, Shimaoka T, Kurioka M & Yokota A (2007) FEBS J274, 3013-3020], and that glutathione protects APX from irreversible oxidation of the cysteine thiol and loss of enzyme activity by binding to the cysteine thiol group.


Subject(s)
Cysteine/chemistry , Heme/chemistry , Peroxidases/chemistry , Propionates/chemistry , Ascorbate Peroxidases , Crystallography, X-Ray , Cysteine/genetics , Cysteine/metabolism , Enzyme Activation/drug effects , Heme/metabolism , Hydrogen Peroxide/pharmacology , Isoenzymes/chemistry , Isoenzymes/genetics , Isoenzymes/metabolism , Models, Molecular , Molecular Structure , Oxidation-Reduction , Peroxidases/genetics , Peroxidases/metabolism , Protein Structure, Tertiary , Recombinant Proteins/metabolism , Rhodophyta/enzymology , Tandem Mass Spectrometry , Nicotiana/enzymology
16.
Biotechnol J ; 2(5): 565-76, 2007 May.
Article in English | MEDLINE | ID: mdl-17373644

ABSTRACT

Calpain represents a family of Ca(2+)-dependent cytosolic cysteine proteases found in almost all eukaryotes and some bacteria, and is involved in a variety of biological phenomena, including brain function. Several substrates of calpain are aggressively proteolyzed under pathological conditions, e.g., in neurodegenerating processes, fodrin is proteolyzed by calpain. Because very small amounts of substrate are proteolyzed by calpain under normal biological conditions, the molecular identities of calpain substrates are largely unknown. In this study, an extensive survey of the substrates of p94/calpain 3 in COS7 cells was executed using iTRAQ(TM) labeling and 2-D LC-MALDI analysis. p94 was used because: (i) several p94 splicing variants are expressed in brain tissue even though p94 itself is a skeletal-muscle-specific calpain, and (ii) it exhibits Ca(2+)-independent activity in COS cells, which makes it useful for evaluating the effects of p94 protease activity on proteins without perturbing the cells. Our approach revealed several novel protein substrates for p94, including the substrates of conventional calpains, components of the protein synthesis system, and enzymes of the glycolytic pathway. The results demonstrate the usefulness and sensitivity of this approach for mining calpain substrates. A combination of this method with other analytical methods would contribute to elucidation of the biological relevance of the calpain family.


Subject(s)
Calpain/metabolism , Gene Expression Profiling/methods , Genomics/methods , Protein Biosynthesis/physiology , Proteome/metabolism , Animals , COS Cells , Chlorocebus aethiops , Enzyme Activation , Gene Expression Regulation/physiology , Proteomics/methods , Substrate Specificity
17.
Bioorg Med Chem ; 12(17): 4575-83, 2004 Sep 01.
Article in English | MEDLINE | ID: mdl-15358285

ABSTRACT

Recent investigations discovered nonkinase-type phorbol ester receptors, RasGRPs, chimaerins, and Unc13s. Phorbol ester binding occurs at the cysteine-rich sequences of about 50 residues in the C1 domains of these receptors. Fifty-one-residue RasGRP C1 peptides except for RasGRP2 showed significant phorbol 12,13-dibutyrate (PDBu) binding, but the K(d) values of the RasGRP1 and RasGRP3 C1 peptides were about 10-fold larger than those for the corresponding whole enzymes. Addition of the C-terminal basic amino acid cluster decreased their K(d) values about 10-fold, suggesting that the positive charges of these C1 peptides play an important role in the PDBu binding in the presence of negatively-charged phosphatidylserine. The 51-mer chimaerin C1 peptides showed potent PDBu binding, while the Unc13 and Munc13-1 C1 peptides without sufficient positive charges hardly bound PDBu. By the rapid screening system using this C1 peptide library, 5-prenyl-indolactam-V was identified as a promising lead for the novel protein kinase C isozyme specific ligands.


Subject(s)
Carcinogens/pharmacology , Chimerin Proteins/metabolism , DNA-Binding Proteins/metabolism , Glycogen Synthase/metabolism , Guanine Nucleotide Exchange Factors/metabolism , Nerve Tissue Proteins/metabolism , Peptide Fragments/metabolism , Protein Kinase C/metabolism , Amino Acid Sequence , Binding Sites/drug effects , Chimerin Proteins/chemistry , DNA-Binding Proteins/chemistry , Glycogen Synthase/chemistry , Guanine Nucleotide Exchange Factors/chemistry , Humans , Indoles/pharmacology , Isoenzymes/drug effects , Isoenzymes/metabolism , Lactams/pharmacology , Ligands , Molecular Sequence Data , Nerve Tissue Proteins/chemistry , Peptide Fragments/chemistry , Peptide Fragments/drug effects , Phorbol 12,13-Dibutyrate/pharmacology , Protein Kinase C/chemistry
18.
Bioorg Med Chem ; 11(23): 5075-82, 2003 Nov 17.
Article in English | MEDLINE | ID: mdl-14604671

ABSTRACT

Effect of zinc and other metal ions on the folding of the protein kinase C (PKC) surrogate peptide (PKCeta-C1B) was analyzed intact under neutral conditions by electrospray ionization mass spectrometry (ESI-MS). ESI-MS spectrum of 64ZnCl(2)-folded PKCeta-C1B clearly showed that PKCeta-C1B coordinates specifically two atoms of zinc, and that the two thiol protons are lost in each zinc ion coordinate center. 113CdCl(2)-folded PKCeta-C1B also showed stoichiometry of two cadmium atoms that was proved by addition of EDTA. The dissociation constants of zinc- and cadmium-folded PKCeta-C1B in the phorbol 12,13-dibutyrate binding (PDBu) were similar (0.66 and 0.81 nM) with different B(max) values (46.4 and 71.4%). The difference would reflect higher coordination potency of cadmium ion that was demonstrated by ESI-MS when PKCeta-C1B was folded by 1:1 mixture of zinc and cadmium ions. In contrast, 63CuCl(2)-treated PKCeta-C1B did not show any copper-coordinated peak, instead a molecular mass less than 6 mass units smaller than that of apo-PKCeta-C1B was observed. The multiple charge mass envelope of copper-treated PKCeta-C1B shifted to that of the lower mass charge state like zinc-treated PKCeta-C1B. These data suggest that the copper treatment formed three intramolecular S-S bonds to abolish the PDBu binding of PKCeta-C1B.


Subject(s)
Cysteine/metabolism , Metals/metabolism , Protein Kinase C/metabolism , Spectrometry, Mass, Electrospray Ionization/methods , Phorbol 12,13-Dibutyrate/metabolism , Protein Binding , Protein Folding , Protein Kinase C/chemistry
19.
J Biol Chem ; 278(46): 46179-87, 2003 Nov 14.
Article in English | MEDLINE | ID: mdl-12944403

ABSTRACT

Cerebral amyloid angiopathy (CAA) due to beta-amyloid (Abeta) is one of the specific pathological features of familial Alzheimer's disease. Abeta mainly consisting of 40- and 42-mer peptides (Abeta40 and Abeta42) exhibits neurotoxicity and aggregative abilities. All of the variants of Abeta40 and Abeta42 found in CAA were synthesized in a highly pure form and examined for neurotoxicity in PC12 cells and aggregative ability. All of the Abeta40 mutants at positions 22 and 23 showed stronger neurotoxicity than wild-type Abeta40. Similar tendency was observed for Abeta42 mutants at positions 22 and 23 whose neurotoxicity was 50-200 times stronger than that of the corresponding Abeta40 mutants, suggesting that these Abeta42 mutants are mainly involved in the pathogenesis of CAA. Although the aggregation of E22G-Abeta42 and D23N-Abeta42 was similar to that of wild-type Abeta42, E22Q-Abeta42 and E22K-Abeta42 aggregated extensively, supporting the clinical evidence that Dutch and Italian patients are diagnosed as hereditary cerebral hemorrhage with amyloidosis. In contrast, A21G mutation needs alternative explanation with the exception of physicochemical properties of Abeta mutants. Attenuated total reflection-Fourier transform infrared spectroscopy spectra suggested that beta-sheet content of the Abeta mutants correlates with their aggregation. However, beta-turn is also a critical secondary structure because residues at positions 22 and 23 that preferably form two-residue beta-turn significantly enhanced the aggregative ability.


Subject(s)
Amyloid beta-Peptides/chemistry , Amyloid beta-Peptides/genetics , Alzheimer Disease/metabolism , Amino Acid Sequence , Amyloid beta-Peptides/metabolism , Amyloidosis , Animals , Coloring Agents/pharmacology , Humans , Hydrogen Bonding , Microscopy, Electron , Models, Molecular , Molecular Sequence Data , Mutation , PC12 Cells , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Peptides/chemistry , Protein Conformation , Protein Structure, Secondary , Rats , Sequence Homology, Amino Acid , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Spectroscopy, Fourier Transform Infrared , Tetrazolium Salts/pharmacology , Thiazoles/pharmacology , Time Factors
20.
J Biol Chem ; 278(20): 18448-54, 2003 May 16.
Article in English | MEDLINE | ID: mdl-12621060

ABSTRACT

Diacylglycerol kinase (DGK) and protein kinase C (PKC) are two distinct enzyme families associated with diacylglycerol. Both enzymes have cysteine-rich C1 domains (C1A, C1B, and C1C) in the regulatory region. Although most PKC C1 domains strongly bind phorbol esters, there has been no direct evidence that DGK C1 domains bind phorbol esters. We synthesized 11 cysteine-rich sequences of DGK C1 domains with good sequence homology to those of the PKC C1 domains. Among them, only DGKgamma-C1A and DGKbeta-C1A exhibited significant binding to phorbol 12,13-dibutyrate (PDBu). Scatchard analysis of rat-DGKgamma-C1A, human-DGKgamma-C1A, and human-DGKbeta-C1A gave K(d) values of 3.6, 2.8, and 14.6 nm, respectively, suggesting that DGKgamma and DGKbeta are new targets of phorbol esters. An A12T mutation of human-DGKbeta-C1A enhanced the affinity to bind PDBu, indicating that the beta-hydroxyl group of Thr-12 significantly contributes to the binding. The K(d) value for PDBu of FLAG-tagged whole rat-DGKgamma (4.4 nm) was nearly equal to that of rat-DGKgamma-C1A (3.6 nm). Moreover, 12-O-tetradecanoylphorbol 13-acetate induced the irreversible translocation of whole rat-DGKgamma and its C1B deletion mutant, not the C1A deletion mutant, from the cytoplasm to the plasma membrane of CHO-K1 cells. These results indicate that 12-O-tetradecanoylphorbol 13-acetate binds to C1A of DGKgamma to cause its translocation.


Subject(s)
Cysteine/chemistry , Diacylglycerol Kinase/chemistry , Phorbol Esters/metabolism , Amino Acid Sequence , Animals , Binding, Competitive , Chromatography, High Pressure Liquid , Cricetinae , Diacylglycerol Kinase/metabolism , Gene Deletion , Green Fluorescent Proteins , Humans , Kinetics , Luminescent Proteins/chemistry , Luminescent Proteins/metabolism , Molecular Sequence Data , Mutation , Neoplasms/chemically induced , Peptides/chemistry , Phorbol 12,13-Dibutyrate/chemistry , Protein Binding , Protein Conformation , Protein Folding , Protein Isoforms , Protein Structure, Tertiary , Protein Transport , Rats , Recombinant Fusion Proteins/chemistry , Sequence Homology, Amino Acid , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Threonine/chemistry , Time Factors
SELECTION OF CITATIONS
SEARCH DETAIL
...