ABSTRACT
The 62 residue peptide, SSR(1-62), whose sequence corresponds to that of ribonuclease (RNase) from Sulfolobus solfataricus, and its related peptides, SSR(1-22) and SSR(10-62), were chemically synthesized and their RNase activity and DNA-binding activity were examined. The RNase activity assay using yeast RNA or tRNA(fMet) as substrate showed that the synthetic peptide SSR(1-62) did not hydrolyze yeast RNA or tRNA(fMet). These data were not consistent with previous reports that both the native peptide isolated from S. solfataricus [Fusi et al. (1993) Eur. J. Biochem. 211, 305-311] and the recombinant peptide expressed in Escherichia coli [Fusi et al. (1995) Gene 154, 99-103] were able to hydrolyze tRNA(fMet). However, the synthetic SSR(1-62) exhibited DNA-binding activity. In the presence of synthetic SSR(1-62), the cleavage of DNA (plasmid pUCRh2-4) by restriction endonuclease (EcoRI) was not observed, suggesting that synthetic SSR(1-62) bound to DNA protected DNA from its enzymatic digestion. Neither SSR(1-22) nor SSR(10-62) prevented DNA from being cleaved by a restriction enzyme. These findings strongly suggest the importance of not only the N-terminal region of SSR(1-62) but also the C-terminal region for DNA-binding. Circular dichroism spectroscopy of synthetic SSR(1-62) indicated a beta-sheet conformation, in contrast with synthetic SSR(1-22), which exhibited an unordered conformation.
Subject(s)
Amino Acids/metabolism , Archaeal Proteins/metabolism , Peptide Fragments/metabolism , Ribonucleases/metabolism , Sulfolobus/enzymology , Amino Acid Sequence , Archaeal Proteins/chemical synthesis , Circular Dichroism , DNA/metabolism , DNA-Binding Proteins/chemical synthesis , DNA-Binding Proteins/metabolism , Electrophoresis, Polyacrylamide Gel , Hydrolysis , Molecular Sequence Data , Peptide Fragments/chemical synthesis , Protein Conformation , RNA/metabolism , RNA, Transfer, Met/metabolism , Ribonucleases/chemical synthesis , Sequence AnalysisABSTRACT
The 2-adamantyloxycarbonyl group was employed for the protection of the epsilon-amino group of Lys and the hydroxyl group of Tyr, and the 2-adamantyl ester was employed for the protection of the beta-carboxyl group of Asp in order to construct eight peptide segments as building blocks for the preparation of peptide fragments related to the sequence of Sulfolobus solifataricus Ribonuclease. The usefulness of the above protecting groups developed in our laboratory was confirmed.
Subject(s)
Adamantane/analogs & derivatives , Peptide Fragments/chemical synthesis , Ribonucleases/chemical synthesis , Sulfolobus/enzymology , Adamantane/chemical synthesis , Adamantane/chemistry , Amino Acid Sequence , Indicators and Reagents , Molecular Sequence Data , Peptide Fragments/chemistry , Ribonucleases/chemistryABSTRACT
Segment condensations were performed to construct peptide fragments related to Sulfolobus solifataricus Ribonuclease. At each condensation step, the new protecting groups were stable. The protected peptide fragments were treated with a low-high HF procedure to give the desired peptide fragments. These peptide fragments were also prepared by the solid-phase method, and the obtained peptides were compared with those obtained by the solution method. The peptide fragments obtained by the solution method were identical with those obtained by the solid-phase method on analytical HPLC, indicating that the new protecting groups could be easily removed by HF, and no racemization occurred during the synthesis of the protected peptides.
