S(H)2 reaction vs hydrogen abstraction/expulsion in methyl radical-methylsilane reactions: effects of prereactive complex formation.

A quantum chemical study has been undertaken to elucidate the cause of the recently observed S(H)2 reaction between the deuterated methyl radical (*CD3) and methylsilane (SiD3CH3) following the photolysis of CD3I. [Komaguchi, K.; Norberg, D.; Nakazawa, N.; Shiotani, M.; Persson, P.; Lunell, S. Chem. Phys. Lett. 2005, 410, 1-5.] It is found that the backside S(H)2 mechanism may proceed favorably for C-Si-C angles deviating with up to 40 degrees from linearity. The competitive hydrogen abstraction reaction is predicted to be active in the range of 90 degrees

Structures and cis-to-trans photoisomerization of hexafluoro-1,3-butadiene radical cation: electron spin resonance and computational studies.

The s-cis and s-trans isomer radical cations of hexafluoro-1,3-butadiene (s-cis-HFBD+ and s-trans-HFBD+) were generated by a gamma-irradiated solid solution of the neutral HFBD molecule in solid matrix at 77 K and observed by means of electron spin resonance (ESR) and electronic spectroscopies. In comparing the experimental isotropic and anisotropic 19F hyperfine splittings with the computational ones by the DFT B3LYP and MP2 methods, the generated s-cis-HFBD+ and s-trans-HFBD+ radical cations were confirmed to be 2A2 and 2Bg electronic ground states in C2v and C2h symmetries, respectively. The present spectroscopic study revealed that the relative abundance of s-cis-HFBD+ to s-trans-HFBD+ was 4.0 immediately after being formed by gamma-irradiation, and subsequently most s-cis-HFBD+ was isomerized to s-trans-HFBD+ by visible-light illumination with 500-600 nm wavelength. The process of nonplanar HFBD ionizing to form stable planar s-cis- and s-trans-HFBD+ and the reaction mechanism of the cis-to-trans photoisomerization were discussed by (MS-)CASPT2//CASSCF calculated vertical excitation energies (Tv) and torsional potential energy curves (TPECs) of HFBD and HFBD+.

Structures of the hexafluorocyclopropane, octafluorocyclobutane, and decafluorocyclopentane radical anions probed by experimental and computational studies of anisotropic electron spin resonance (ESR) spectra.

Anisotropic electron spin resonance (ESR) spectra are reported for the radical anions of hexafluorocyclopropane (c-C(3)F(6)(-)), octafluorocyclobutane (c-C(4)F(8)(-)), and decafluorocyclopentane (c-C(5)F(10)(-)) generated via gamma-irradiation in plastically crystalline tetramethylsilane (TMS) and rigid 2-methyltetrahydrofuran (MTHF) matrices. By combining the analysis of these experimental ESR spectra involving anisotropic hyperfine (hf) couplings with a series of quantum chemical computations, the geometrical and electronic structure of these unusual perfluorocycloalkane radical anions have been characterized more fully than in previous studies that considered only the isotropic couplings. Unrestricted Hartree-Fock (UHF) computations with the 6-311+G(d,p) basis set predict planar ring structures for all three radical anions, the ground electronic states being (2)A(2)(") for c-C(3)F(6)(-) (D(3h) symmetry), (2)A(2u) for c-C(4)F(8)(-) (D(4h)), and (2)A(2)(") for c-C(5)F(10)(-) (D(5h)), in which the respective six, eight, and ten 19F-atoms are equivalent by symmetry. A successful test of the theoretical computation is indicated by the fact that the isotropic 19F hf couplings computed by the B3LYP method with the 6-311+G(2df,p) basis set for the optimized geometries are in almost perfect agreement with the experimental values: viz., 19.8 mT (exp) vs 19.78 mT (calc) for c-C(3)F(6)(-); 14.85 mT (exp) vs 14.84 mT (calc) for c-C(4)F(8)(-); 11.6 mT (exp) vs 11.65 mT (calc) for c-C(5)F(10)(-). Consequently, the same computation method has been applied to calculate the almost axially symmetric anisotropic 19F hf couplings for the magnetically equivalent 19F atoms: (-4.90 mT, -4.84 mT, 9.75 mT) for c-C(3)F(6), (-3.54 mT, -3.48 mT, 7.02 mT) for c-C(4)F(8)(-), and (-2.62 mT, -2.56 mT, 5.18 mT) for c-C(5)F(10)(-). ESR spectral simulations performed using the computed principal values of the hf couplings and the spatial orientations of the 19F nuclei as input parameters reveal an excellent fit to the experimental anisotropic ESR spectra of c-C(3)F(6)(-), c-C(4)F(8)(-), and c-C(5)F(10)(-), thereby providing a convincing proof of the highly symmetric D(nh) structures that are predicted for these negative ions. Furthermore, using the computed 19F principal values and their orientations, the effective 19F anisotropic hf couplings along the molecular symmetry axes were evaluated for c-C(3)F(6)(-) and c-C(4)F(8)(-) and successfully correlated with the positions of the characteristic outermost features in both the experimental and calculated anisotropic spectra. In addition, the electronic excitation energies and oscillator strengths for the c-C(3)F(6)(-) , c-C(4)F(8)(-), and c-C(5)F(10)(-) radical anions were computed for the first time using time-dependent density functional theory (TD-DFT) methods.

High-resolution ESR study of the H...CH3, H...CHD2, D...CH2D, and D...CD3 radical pairs in solid argon.

High-resolution electron spin resonance (ESR) spectra of radical pairs of a hydrogen atom that coupled with a methyl radical (H...CH3, H...CHD2, D...CH2D, and D...CD3) were observed for X-ray irradiated solid argon containing selectively deuterium-labeled methanes, CH4, CH2D2, and CD4, at 4.2 K. The double-quartet 1H-hyperfine (hf) splittings of ca. 26 and 1.16 mT at the Deltam(s) = +/-1 and Deltam(s) = +/-2 transitions, which are one-half of the isotropic 1H-hf splittings of an isolated H-atom and a CH3 radical, were attributed to the H...CH3 pair. The 1H-hf splittings at the Deltam(s) = +/-1 transition were further split by the fine structure (fs) due to the electron dipole-dipole coupling. Because of the high-resolution spectra, three different sets of the fs splitting, d, are clearly resolved in the spectra of both the H...CH3 and the D...CD3 pairs. The separation distance (inter-spin distance), R, between the H-atom and the CH3 radical being in pairs was evaluated from the d values based on a point-dipole interaction model. For the case of the H...CH3 pair, the observed d values of 4.2, 4.9, and 5.1 mT yield the respective separations, R = 0.87, 0.83, and 0.82 nm, to probe the trapping site of the pair in an Ar crystalline lattice (fcc). For the pair with R = 0.87 nm, for example, we propose that the CH3 radical occupies a substitutional site and the counter H-atom occupies either the interstitial tetrahedral sites directed away from the CH3 radicals by a distance of 0.87 nm or the interstitial octahedral sites by a distance of 0.88 nm. When a mixture of CH4 and CD4 in a solid Ar matrix was irradiated, only two different radical pairs, H...CH3 and D...CD3, were observed. This result clearly demonstrates that the hydrogen atom and methyl radicals, which undergo a pairwise trapping, can originate from the same methane molecule.

Structures of tetrafluorocyclopropene, hexafluorocyclobutene, octafluorocyclopentene and related perfluoroalkene radical anions revealed by electron spin resonance spectroscopic and computational studies.

Isotropic and anisotropic ESR spectra were observed for the radical anions of hexafluorocyclobutene (c-C(4)F(6)(-)), octafluorocyclopentene (c-C(5)F(8)(-)) and perfluoro-2-butene (CF(3)CF=CFCF(3)(-)) in gamma-irradiated plastically crystalline neopentane, tetramethylsilane (TMS) and TMS-d(12) matrices, or the rigid 2-methyltetrahydrofuran (MTHF) matrix. The isotropic spectra of c-C(4)F(6)(-) and c-C(5)F(8)(-) are characterized by three different sets of pairs of (19)F nuclei with the isotropic hyperfine (hf) splittings of 15.2 (2F), 6.5 (2F), 1.1 (2F) mT for c-C(4)F(6)(-) and 14.7 (2F), 7.4 (2F), 1.0 (2F) mT for c-C(5)F(8)(-). By comparison with the results of ab initio quantum chemical computations, the large triplet (19)F hf splittings of ca. 15 mT are assigned to the two fluorines attached to the C=C bond. The UHF, B3LYP and MP2 computations predict that the geometrical structures of the perfluoroalkenes are strongly distorted by one-electron reduction to form their radical anions; c-C(3)F(4)(-): C(2) symmetry ((2)A state) <-- C(2)(v) ((1)A(1)), c-C(4)F(6)(-): C(1) ((2)A) <-- C(2)(v) ((1)A(1)) and c-C(5)F(8)(-): C(1) ((2)A) <-- C(s) ((1)A'). The structural distortion arises from a mixing of the pi* and higher-lying sigma* orbitals at the C=C carbons similar to that previously found for CF(2)=CF(2)(-) with a C(2)(h) distortion. The isotropic (19)F hf splittings computed with the B3LYP method with 6-311+G(2df,p) basis set for the geometry optimized by the UHF and/or MP2 methods are within 6% error of the experimental values. The experimental anisotropic spectra of c-C(4)F(6)(-), c-C(5)F(8)(-) and CF(2)=CF(2)(-) were satisfactorily reproduced by the ESR spectral simulation method using the computed hf principal values and orientation of (19)F nuclei. In addition, the electronic excitation energies and oscillator strengths for the CF(2)=CF(2)(-), c-C(3)F(4)(-), c-C(4)F(6)(-) and c-C(5)F(8)(-) radical anions were computed for the first time by TD-DFT methods.

Automatic fitting to 'powder' EPR spectra of coupled paramagnetic species employing Feynman's theorem.

A previous automatic fitting procedure of EPR spectra has been extended with the purpose to characterise coupled paramagnetic complexes in powders and frozen solutions. The theoretical EPR spectra were obtained by matrix diagonalization of a general spin Hamiltonian. A least-squares fitting procedure using analytical derivatives of the calculated spectrum with respect to the spectroscopic, fine structure, nuclear quadrupole, electron-electron, and hyperfine coupling tensors was used to refine those parameters. The powder spectra of matrix isolated *CF3 and RCF2CF2* radicals, previously measured at low temperature, were reanalysed with this method. A theoretically modeled complex consisting of a Cu2+ ion, featuring an axially symmetric g-tensor and 63Cu hyperfine structure anisotropy, and a free radical located at different orientations, with respect to the symmetry axis of the Cu2+ ion, was examined in order to investigate the possibility to recover the magnetic parameters of the separate units and the magnetic couplings between them.

ESR and theoretical studies of trimer radical cations of coronene.

Highly resolved ESR spectra of monomer, dimer and trimer radical cations of coronene (C24H12) were observed at room temperature for a solution of 1,1,1,3,3,3-hexafluoro-2-propan-2-ol (HFP) containing thallium(III) trifluoroacetate as oxidant. The spectra consisting of multiple lines with isotropic 1H-hyperfine splitting (hfs) constants of 0.0766 mT (24H) and 0.013 mT (6H) were attributable to a mixture of the dimer with the trimer radical cations, (C24H12)2+ and (C24H12)3+. For (C24H12)2+, the 1H-hfs constant agreed well with the reported value, 0.077 mT. However, for (C24H12)3+, the values were significantly different from the reported ones, 0.117 mT (12H) and 0.020 mT (24H), by Ohya Nishiguchi et al. [H. Ohya-Nishiguchi, H. Ide, N. Hirota, Chem. Phys. Lett. 66 (1979) 581], but rather similar to those reported by Willigen et al. [H. van Willigen, E. De Boer, J.T. Cooper, W.F. Forbes, J. Chem . Phys. 49 (1968) 1190]. In conflict with Willigen's report, however, no ESR line broadening which has been ascribed to a low stationary concentration of (C24H12)3+ was detected. Based on ab initio MO calculations for benzene as a compact model of C24H12, the structure of (C24H12)3+ was investigated in terms of the observed 1H-hfs constants. A staggered sandwich C(2v) structure was suggested being at the "global" minimum for the benzene trimer cation. In the structure, the unpaired electron spin is predominantly localized to the central ring, which is qualitatively in agreement with the previous ESR results of (C24H12)3+ by Ohya-Nishiguchi et al. In addition, as a "local" minimum, the benzene trimer was indicated to have a slipped sandwich Cs structure, which is less stable by ca. 19 kJ mol(-1) than the "global" minimum. In this structure, the unpaired electron spin was nearly equally distributed on both the central and one of the two side C24H12 molecules. The observed 1H-hfs constants were possibly attributable to the (C24H12)3+ cation with the analogous slipped sandwich Cs structure.

A spectroscopic study on defluorination of poly(tetrafluoroethylene) by alkyllithium/electron-donating solvents.

Defluorination of PTFE by alkyllithium/electron-donating solvents such as N,N,N',N'-tetramethylethylenediamine (TMEDA), hexamethylphosphoramide (HMPA) was studied by means of spectroscopy such as ESR, 7Li- and 13C-NMR, XPS, UV-Vis and IR. Based on the experimental results, it was concluded that an electron from radical species, which was generated in the alkyllithium/electron-donating solvent, was transferred onto PTFE molecule so as to eliminate fluorine atoms from the PTFE and to form carbon-centered radicals on the PTFE; concomitantly, the alkyl group of the alkyllithium was transferred onto the PTFE. Combined with the experimental results of the phenyllithium/HMPA system, mechanism of the fluorine atom elimination reactions from PTFE by the radical species is discussed.

New strontium polysulfides, SrS3, and Sr2(OH)2S4.10H2O, obtained by the high-pressure treatment of a Sr-S mixture.

A new polymorph of SrS(3) was obtained by a reaction of SrS and S with an atomic ratio of Sr:S = 1:5 under a pressure of 5 GPa at 1200 degrees C. It crystallized in a tetragonal unit cell with a = 6.708(1) A, c = 3.942(1) A, and V = 177.36(6) A(3). It was isotypic with BaS(3), and contained S3(2-) polysulfide ions. The product obtained from the high-pressure synthesis contained an amorphous component. It was highly deliquescent and formed a yellowish solution. A new layered polysulfide, Sr(2)(OH)(2)S(4).10H(2)O, crystallized in the solution. The sulfide belonged to a triclinic space group of P (No. 2) with lattice constants of a = 5.9107(5) A, b = 7.8682(6) A, c = 9.4134(6) A, alpha = 75.639(6) degrees, beta = 73.824(3) degrees, gamma = 71.639(3) degrees, V = 392.83(5) A(3), and Z = 1. Each Sr ion was coordinated with one OH ligand and eight H(2)O ligands. Six H(2)O ligands out of the eight were bridging ligands to form two-dimensional [Sr(2)(OH)(2)(H(2)O)(10)(2+)]( infinity ) cationic layers, between which S4(2-) tetrapolysulfide ions were situated. The S4(2-) anion had a coplanar configuration with a dihedral angle of 180.0 degrees. The stability of S4(2-) anions having different conformations was discussed from a viewpoint of ab initio MO calculations on changing the dihedral angles of S4(2-).

Nitric oxide adsorbed on zeolites: EPR studies.

CW-EPR studies of NO adsorbed on sodium ion-exchanged zeolites were focused on the geometrical structure of NO monoradical and (NO)2 biradical formed on zeolites. The EPR spectrum of NO monoradical adsorbed on zeolite can be characterized by the three different g-tensor components and the resolved y-component hyperfine coupling with the 14N nucleus. Among the g-tensor components, the value of g(zz) is very sensitive to the local environment of zeolite and becomes a measure of the electrostatic field in zeolite. The temperature dependence of the g-tensor demonstrated the presence of two states of the Na-NO adduct, in rigid and rotational states. The EPR spectra of NO adsorbed on alkaline metal ion-exchanged zeolite and their temperature dependency are essentially the same as that on sodium ion-exchanged zeolite. On the other hand, for NO adsorbed on copper ion-exchanged zeolite it is known that the magnetic interaction between NO molecule and paramagnetic copper ion are observable in the spectra recorded at low temperature. The signals assigned to (NO)2 biradical were detected for EPR spectrum of NO adsorbed on Na-LTA. CW-EPR spectra as well as their theoretical calculation suggested that the two NO molecules are aligned along their N-O bond axes. A new procedure for automatical EPR simulation is described which makes it possible to analyze EPR spectrum easily. In the last part of this paper, some instances when other nitrogen oxides were used as a probe molecule to characterize the zeolite structure, chemical properties of zeolites, and dynamics of small molecules were described on the basis of selected literature data reported recently.

Long-lived mutagenic radicals induced in mammalian cells by ionizing radiation are mainly localized to proteins.

We have provided evidence that long-lived radicals, produced by ionizing radiation, are highly mutagenic and transforming in mammalian cells. Long-lived radicals are scavenged effectively by vitamin C or by epigallocatechin-3-O-gallate (EGCG). Long-lived radicals are not involved in lethality or in the induction of chromosome aberrations. We now report the results of experiments that define the relative amounts of long-lived radicals in DNA and proteins and identify the major protein radicals as sulfinyl radicals (R-CH2-S-O*). To make these assignments, yields of long-lived radicals in gamma-irradiated salmon sperm DNA and albumin were compared by ESR. ESR spectra of long-lived radicals produced in irradiated Syrian hamster embryo (SHE) cells were analyzed precisely and compared with ESR parameters obtained by density functional theory calculations. Long-lived radicals yields of 99.8% were produced in proteins. We also identified a new type of long-lived radical as H-added phenylalanine radicals. While our evidence does not rule out the possibility of important biological consequences of the low-level long-lived radicals created by radiation, it implicates radicals in proteins as playing a key role in genetic effects of ionizing radiation. We suggest that these novel radicals, wherever they reside, need to be considered in explanations of biological sequela of radiation.

Synthesis of phenylnitroxides bridged by an sp(3)-linkage.

Silicon- and carbon-bridged phenylnitroxides were synthesized. They exhibited similar ESR profiles independent of the nature of the sp(3) bridge and the substitution mode of the phenylene units. The spectra revealed a quintet signal at room temperature, which became a broad triplet by lowering the temperature. Accumulated ESR measurements at 77 K led to the successful observation of a signal at Deltam(s) = 2, indicating that the triplet state was involved in this system.