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1.
Phys Rev E ; 108(4-1): 044122, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37978623

ABSTRACT

The previously proposed transport equation for the random-barrier model, which is the diffusion equation with resetting to positions visited in the past, is used here to calculate the first-passage times. The results obtained are compared with those obtained using the normal diffusion equation with an effective diffusion coefficient. It is shown that, under certain conditions, the equation with the effective diffusion coefficient can greatly overestimate the time of the first passage. In particular, the rate constant of a bimolecular diffusion-controlled reaction calculated from this equation can be significantly lower than the actual rate. This result can serve as one of the possible explanations for the high rates of diffusion-controlled reactions observed in an experiment.

2.
Phys Rev E ; 99(4-1): 042408, 2019 Apr.
Article in English | MEDLINE | ID: mdl-31108674

ABSTRACT

A method is proposed for generalizing the equations obtained within the framework of the edge-based compartmental modeling approach for the case of non-Poissonian transmission and recovery processes. It is confirmed that non-Markovian systems of equations obtained in this manner, which describe the spread of epidemic diseases, can be represented as Markovian systems of equations. The application of the proposed method in particular types of edge-based compartmental models is considered. In particular, the analytical expressions for the basic reproductive number and the final size of an epidemic are derived for the non-Markovian dynamic variable-degree model.

3.
Phys Rev E ; 97(1-1): 012102, 2018 Jan.
Article in English | MEDLINE | ID: mdl-29448412

ABSTRACT

In this paper, subordinated stochastic processes are considered, where the renewal process acting as the operational time. It is assumed that the observation of the process begins at a certain time after the start of the renewal process. A recurrence formula was derived for calculating the multipoint probability density functions of the aged renewal process. Two-point correlation functions for certain subordinated stochastic processes, particularly for the generalized Ornstein-Uhlenbeck process, were calculated. A model of relaxation in a disordered medium with traps and obstacles is proposed.

4.
Phys Rev E ; 96(1-1): 012126, 2017 Jul.
Article in English | MEDLINE | ID: mdl-29347232

ABSTRACT

Continuous-time random walks of a particle that is randomly reset to an initial position are considered. The distribution of the waiting time between the reset events is represented as a sum of an arbitrary number of exponentials. The governing equation of this stochastic process is established. The mean first-passage time to a particular position is calculated. It is shown that anomalous subdiffusion has a significant impact on the shape of the stationary state.

6.
Phys Rev E Stat Nonlin Soft Matter Phys ; 77(3 Pt 1): 032102, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18517441

ABSTRACT

We consider a linear reversible isomerization reaction A <=> B under subdiffusion described by continuous time random walks (CTRW). The reactants' transformations take place independently on the motion and are described by constant rates. We show that the form of the ensuing system of mesoscopic reaction-subdiffusion equations is unusual: the equation for time derivative of say A(x,t) contains the terms depending not only on DeltaA , but also on DeltaB . This mirrors the fact that in subdiffusion the flux of particles at time t is defined by the distributions of the particles' concentrations at all previous times. Since the particles which jump as A at time t could previously be both A or B , this flux depends on both A and B concentrations.


Subject(s)
Biophysics/methods , Diffusion , Kinetics , Models, Biological , Models, Chemical , Models, Statistical , Models, Theoretical , Physics/methods , Probability
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