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2.
Gastrointest Endosc ; 46(3): 226-30, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9378209

ABSTRACT

BACKGROUND: Magnification endoscopy and chromoendoscopy together have been used to evaluate mucosal detail in a number of conditions, including Barrett's esophagus and flat colonic polyps, but they have not been used to evaluate villous atrophy in the proximal small intestine. METHODS: Thirty-four patients suspected of having a malabsorption syndrome (either celiac disease or tropical sprue) were evaluated using an Olympus magnification gastroscope in both normal and high magnification settings. Indigo carmine dye spraying techniques were used to assist in evaluating duodenal mucosa for evidence of villous atrophy. The accuracy of endoscopically predicted villous atrophy was assessed by histologic evaluation of biopsy specimens taken in the descending duodenum. RESULTS: Magnification endoscopy with dye spraying was both highly sensitive (94%) and specific (88%) in identifying patients with villous atrophy. This technique was more accurate (91%) in identifying patients with partial atrophy than standard endoscopy (9%, p < 0.01) and was also useful in identifying patients with patchy villous atrophy (5 of 5) to allow directed biopsies of abnormal tissue. CONCLUSION: Magnification endoscopy with chromoendoscopy is a promising technique for the evaluation of patients with suspected malabsorption. This technique is especially valuable in patients with partial atrophy, where villous abnormalities can be patchy and the duodenum usually appears normal during standard endoscopy.


Subject(s)
Endoscopy, Digestive System/methods , Intestinal Mucosa/pathology , Malabsorption Syndromes/diagnosis , Atrophy , Barrett Esophagus/complications , Biopsy , Colonic Polyps/complications , Coloring Agents , Duodenum/pathology , Humans , Malabsorption Syndromes/etiology , Malabsorption Syndromes/pathology , Predictive Value of Tests , Video Recording
3.
Biochemistry ; 36(40): 12101-19, 1997 Oct 07.
Article in English | MEDLINE | ID: mdl-9315848

ABSTRACT

The active center of the Escherichia coli sulfite reductase hemoprotein (SiRHP) is exquisitely designed to catalyze the six-electron reductions of sulfite to sulfide and nitrite to ammonia. Refined high-resolution crystallographic structures of oxidized, two-electron reduced, and intermediately reduced states of SiRHP, monitored by single-crystal electron paramagnetic resonance (EPR) spectroscopy, reveal that a bridging cysteine thiolate supplied by the protein always covalently links the siroheme (iron isobacteriochlorin) to the Fe4S4 cluster, facilitating their ability to transfer electrons to substrate. The reduction potential and reactivity of the cluster are tuned by association with the siroheme, accessibility to solvent, and hydrogen bonds supplied by the protein loops containing the four cluster-ligating cysteines. The distorted conformation of the siroheme recognized by the protein potentially destabilizes the electronic conjugation of the isobacteriochlorin ring and produces axial configurations for some propionate side chains that promote interactions with exogenous ligands and active-site residues. An extensive hydrogen-bond network of positively charged side chains, ordered water molecules, and siroheme carboxylates coordinates, polarizes, and influences the protonation state of anionic ligands. In the oxidized (siroheme Fe3+, Fe4S42+) SiRHP crystal structure, the high density of positive charges in the binding pocket is stabilized by the siroheme's sixth axial ligand-an exogenous phosphate anion. Binding assays with H32PO42- demonstrate that oxidized SiRHP binds phosphate in solution with a dissociation constant of 14 microM at pH 7.7, suggesting that phosphate anions play an important role in stabilizing and sequestering the active-site of the oxidized enzyme in vivo. Reduction of the cofactors couples changes in siroheme iron coordination geometry to changes in active-site protein conformation, leading to phosphate release both in the crystal and in solution. An intermediately reduced enzyme, where the siroheme is mainly ferrous (+2) and the cluster cubane is mainly oxidized (+2), appears to have the lowest affinity for phosphate in the crystal. Reduction-gated release of phosphate from the substrate-binding site may explain the 10(5)-fold increase in rates of ligand association that accompany reduction of SiRHP.


Subject(s)
Heme/analogs & derivatives , Iron-Sulfur Proteins/chemistry , Oxidoreductases Acting on Sulfur Group Donors/chemistry , Binding Sites , Crystallization , Crystallography, X-Ray , Electron Spin Resonance Spectroscopy , Electrophoresis, Polyacrylamide Gel , Fourier Analysis , Heme/chemistry , Heme/metabolism , Iron-Sulfur Proteins/metabolism , Kinetics , Ligands , Models, Molecular , Oxidation-Reduction , Oxidoreductases Acting on Sulfur Group Donors/metabolism , Phosphates/metabolism , Protein Binding , Reducing Agents , Solutions
4.
Biochemistry ; 36(40): 12120-37, 1997 Oct 07.
Article in English | MEDLINE | ID: mdl-9315849

ABSTRACT

To further understand the six-electron reductions of sulfite and nitrite catalyzed by the Escherichia coli sulfite reductase hemoprotein (SiRHP), we have determined crystallographic structures of the enzyme in complex with the inhibitors phosphate, carbon monoxide, and cyanide, the substrates sulfite and nitrite, the intermediate nitric oxide, the product sulfide (or, most likely, an oxidized derivative thereof), and an oxidized nitrogen species (probably nitrate). A hydrogen-bonded cage of ligand-binding arginine and lysine side chains, ordered water molecules, and siroheme carboxylates provides preferred locations for recognizing the common functional groups of these ligands and accommodates their varied sizes, shapes, and charged without requiring substantial structural changes. The coordination geometries presented here suggest that the successively deoxygenated sulfur and nitrogen species produced during catalysis need not alter their orientation in the active site to adopt new stable coordination states. Strong pi-acid ligands decrease the bond length between the siroheme and the proximal cysteine thiolate shared with the iron-sulfur cluster, emphasizing the ability of the coupled cofactors to promote electron tranfer into substrate. On binding the siroheme, the substrate sulfite provides an oxygen atom in a unique location of the binding site compared to all other ligands studied, induces a spin transition in the siroheme iron, flips an active-site arginine, and orders surrounding active-center loops. The loop that coalesces over the active center shields the positively charged ligand-coordinating residues from solvent, enhancing their ability to polarize the substrate. Hydrogen bonds supplied by active-site arginine and lysine residues facilitate charge transfer into the substrate from the electron-rich cofactors, activate S-O bonds for reductive cleavage, and provide potential proton sources for the formation of favorable aquo leaving groups on the substrate. Strong interactions between sulfite and ordered water molecules also implicate solvent as a source of protons for generating product water. From the structures reported here, we propose a series of key structural states of ligated SiRHP in the catalytic reduction of sulfite to sulfide.


Subject(s)
Escherichia coli/enzymology , Hemeproteins/chemistry , Oxidoreductases Acting on Sulfur Group Donors/antagonists & inhibitors , Oxidoreductases Acting on Sulfur Group Donors/chemistry , Binding Sites , Carbon Monoxide/chemistry , Catalysis , Crystallography, X-Ray , Cyanides/chemistry , Heme/analogs & derivatives , Heme/chemistry , Ligands , Nitrates/chemistry , Nitrites/chemistry , Oxidation-Reduction , Oxidoreductases Acting on Sulfur Group Donors/metabolism , Substrate Specificity/drug effects , Sulfites/chemistry
6.
Arch Ophthalmol ; 114(11): 1416-9, 1996 Nov.
Article in English | MEDLINE | ID: mdl-8906037

ABSTRACT

The acute retinal necrosis syndrome is a rapidly progressive and potentially devastating disease. A case of acute retinal necrosis developed in an immunocompetent man, Presumably due to the stress, trauma, or immunomodulation related to a craniotomy for a parasellar craniopharyngioma. Vitrectomy and endoretinal biopsy were performed. Polymerase chain reaction studies of the vitreous revealed herpes simplex virus type 2 as the cause, which has not been previously well documented. Results of cerebrospinal fluid antibody studies were also consistent with the diagnosis. Results of cytology and histopathologic examination demonstrated extensive retinal destruction and mononuclear cell infiltration. Sloughing of the inner retina was evidenced by the presence of retinal vascular remnants in the vitreous cytology specimen. As is characteristic of this disease, the visual outcome of this patient was poor.


Subject(s)
Eye Infections, Viral/pathology , Herpes Simplex/pathology , Herpesvirus 2, Human/genetics , Retinal Necrosis Syndrome, Acute/pathology , Retinal Necrosis Syndrome, Acute/virology , Adult , Craniopharyngioma/surgery , Craniotomy , DNA, Viral/analysis , Eye Enucleation , Fundus Oculi , Herpes Simplex/complications , Herpesvirus 2, Human/isolation & purification , Humans , Immunocompetence , Male , Pituitary Neoplasms/surgery , Polymerase Chain Reaction , Retina/pathology , Vitrectomy , Vitreous Body/pathology , Vitreous Body/virology
7.
Science ; 270(5233): 59-67, 1995 Oct 06.
Article in English | MEDLINE | ID: mdl-7569952

ABSTRACT

Fundamental chemical transformations for biogeochemical cycling of sulfur and nitrogen are catalyzed by sulfite and nitrite reductases. The crystallographic structure of Escherichia coli sulfite reductase hemoprotein (SiRHP), which catalyzes the concerted six-electron reductions of sulfite to sulfide and nitrite to ammonia, was solved with multiwavelength anomalous diffraction (MAD) of the native siroheme and Fe4S4 cluster cofactors, multiple isomorphous replacement, and selenomethionine sequence markers. Twofold symmetry within the 64-kilodalton polypeptide generates a distinctive three-domain alpha/beta fold that controls cofactor assembly and reactivity. Homology regions conserved between the symmetry-related halves of SiRHP and among other sulfite and nitrite reductases revealed key residues for stability and function, and identified a sulfite or nitrite reductase repeat (SNiRR) common to a redox-enzyme superfamily. The saddle-shaped siroheme shares a cysteine thiolate ligand with the Fe4S4 cluster and ligates an unexpected phosphate anion. In the substrate complex, sulfite displaces phosphate and binds to siroheme iron through sulfur. An extensive hydrogen-bonding network of positive side chains, water molecules, and siroheme carboxylates activates S-O bonds for reductive cleavage.


Subject(s)
Escherichia coli/enzymology , Oxidoreductases Acting on Sulfur Group Donors/chemistry , Sulfites/metabolism , Amino Acid Sequence , Anions , Binding Sites , Catalysis , Computer Graphics , Crystallography, X-Ray , Hydrogen Bonding , Models, Molecular , Molecular Sequence Data , Oxidation-Reduction , Oxidoreductases Acting on Sulfur Group Donors/metabolism , Protein Conformation , Protein Folding , Protein Structure, Secondary , Protein Structure, Tertiary , Sulfite Reductase (NADPH)
9.
Trends Endocrinol Metab ; 5(8): 324-8, 1994 Oct.
Article in English | MEDLINE | ID: mdl-18407225

ABSTRACT

In the setting of sepsis, adrenal function can be difficult to evaluate. Cortisol levels, normally elevated by the stress of sepsis, are occasionally reduced, signifying possible adrenal dysfunction. Even elevated cortisol levels do not assure that adrenal reserve is adequate and may in fact portend a preterminal state. Bilateral adrenal hemorrhage leading to adrenal insufficiency is one complication of the sepsis syndrome. This endocrine rounds illustrates the importance in considering adrenal insufficiency and adrenal hemorrhage in patients with overwhelming sepsis while discussing the pathophysiology, clinical presentation, and therapeutic implications of this dire complication.

10.
Biochemistry ; 32(34): 8782-91, 1993 Aug 31.
Article in English | MEDLINE | ID: mdl-8395881

ABSTRACT

The heme protein subunit of sulfite reductase (SiR-HP; M(r) 64,000) from Escherichia coli as isolated contains the isobacteriochlorin siroheme exchange-coupled to a [4Fe-4S] cluster in the 2+ oxidation state. SiR-HP in the presence of a suitable electron donor can catalyze the six-electron reductions of sulfite to sulfide and nitrite to ammonia. Paramagnetic 1H NMR was used to study the low-spin complexes of SiR-HP formed by binding the exogenous inhibitor cyanide or the substrates sulfite and nitrite. As a model, the cyanide complex of purified siroheme was also prepared. The NMR spectrum of isolated ferric low-spin siroheme-CN is consistent with spin density being transferred into the a2u molecular orbital, an interaction which is symmetry-forbidden in porphyrins. The pattern of proton NMR shifts observed for isolated ferric low-spin siroheme-CN is very similar to those obtained for the protein-cyanide complex. NMR spectra of the cyanide complex of SiR-HP were obtained in all three accessible redox states. The pattern of hyperfine shifts observed for the one-electron and two-electron reduced cyanide complexes is typical of those seen for [4Fe-4S] clusters in the 2+ and 1+ oxidation states, respectively. Resonances arising from the beta-CH2 protons of cluster cysteines have been assigned for all complexes studied utilizing deuterium substitution. The cyanide-, sulfite-, and nitrite-ligated states possessed an almost identically shifted upfield cluster cysteine resonance whose presence indicates that covalent coupling exists between siroheme and cluster in solution. Data are also presented for the existence of a secondary anion binding site, the occupancy of which perturbs the oxidized SiR-HP NMR spectrum, where binding occurs at a rate much faster than that of ligand binding to heme.


Subject(s)
Escherichia coli/enzymology , Hemeproteins/chemistry , Oxidoreductases Acting on Sulfur Group Donors/chemistry , Cyanides/chemistry , Heme/analogs & derivatives , Heme/chemistry , Hemeproteins/analysis , Ligands , Magnetic Resonance Spectroscopy , Oxidation-Reduction , Protons
11.
Biochemistry ; 32(11): 2853-67, 1993 Mar 23.
Article in English | MEDLINE | ID: mdl-8457551

ABSTRACT

The isolated hemeprotein subunit of sulfite reductase (SiR-HP) from Escherichia coli consists of a high spin ferric isobacteriochlorin (siroheme) coupled to a diamagnetic [4Fe-4S]2+ cluster. When supplied with an artificial electron donor, such as methyl viologen cation radical, SiR-HP can catalyze the six electron reductions of sulfite to sulfide and nitrite to ammonia. Thus, the hemeprotein subunit appears to represent the minimal protein structure required for multielectron reductase activity. Proton magnetic resonance spectra are reported for the first time on unligated SiR-HP at 300 MHz in all three redox states. The NMR spectrum of high spin ferric siroheme at pH 6.0 was obtained for the purpose of comparing its spectrum with that of oxidized SiR-HP. On the basis of line widths, T1 measurements, and 1D NOE experiments, preliminary assignments have been made for the oxidized enzyme in solution. The pH profile of oxidized SiR-HP is unusual in that a single resonance shows a 9 ppm shift over a range of only 3 pH units with an apparent pK = 6.7 +/- 0.2. Resonances arising from the beta-CH2 protons of cluster cysteines have been assigned using deuterium substitution for all redox states. One beta-CH2 resonance has been tentatively assigned to the bridging cysteine on the basis of chemical shift, T1, line width, and the presence of NOEs to protons from the siroheme ring. The observed pattern of hyperfine shifts can be used as a probe to measure the degree of coupling between siroheme and cluster in solution. The cluster iron sites of the resting (oxidized) enzyme are found to possess both positive and negative spin density which is in good agreement with Mossbauer results on frozen enzyme. The NMR spectrum of the 1-electron reduced form of SiR-HP is consistent with an intermediate spin (S = 1) siroheme. Intermediate spin Fe(II) hemes have only been previously observed in 4-coordinate model compounds. However, the amount of electron density transferred to the cluster, as measured by the isotropic shift of beta-CH2 resonances, is comparable to that present in the fully oxidized enzyme despite diminution of the total amount of unpaired spin density available. Addition of a second electron to SiR-HP, besides generating a reduced S = 1/2 cluster with both upfield and downfield shifted cysteine resonances, converts siroheme to the high spin (S = 2) ferrous state.(ABSTRACT TRUNCATED AT 400 WORDS)


Subject(s)
Escherichia coli/enzymology , Hemeproteins/chemistry , Oxidoreductases Acting on Sulfur Group Donors/chemistry , Protein Conformation , Binding Sites , Chromatography, Ion Exchange , Hemeproteins/isolation & purification , Hydrogen-Ion Concentration , Kinetics , Macromolecular Substances , Magnetic Resonance Spectroscopy/methods , Mathematics , Oxidoreductases Acting on Sulfur Group Donors/isolation & purification , Oxidoreductases Acting on Sulfur Group Donors/metabolism , Thermodynamics
12.
J Bacteriol ; 173(1): 325-33, 1991 Jan.
Article in English | MEDLINE | ID: mdl-1987123

ABSTRACT

The flavoprotein and hemoprotein components of Escherichia coli B NADPH-sulfite reductase are encoded by cysJ and cysI, respectively. Plasmids containing these two genes overexpressed flavoprotein catalytic activity and apohemoprotein by 13- to 35-fold, but NADPH-sulfite reductase holoenzyme activity was increased only 3-fold. Maximum overexpression of holoenzyme activity was achieved by the inclusion in such plasmids of Salmonella typhimurium cysG, which encodes a uroporphyrinogen III methyltransferase required for the synthesis of siroheme, a cofactor for the hemoprotein. Thus, cofactor deficiency, in this case siroheme, can limit overexpression of a cloned enzyme. Catalytically active holoenzyme accounted for 10% of total soluble protein in a host containing cloned cysJ, cysI, and cysG. A 5.3-kb DNA fragment containing S. typhimurium cysG was sequenced, and the open reading frame corresponding to cysG was identified by subcloning and by identifying plasmid-encoded peptides in maxicells. Comparison with the sequence reported for the E. coli cysG region (J. A. Cole, unpublished data; GenBank sequence ECONIRBC) indicates a gene order of nirB-nirC-cysG in the cloned S. typhimurium fragment. In addition, two open reading frames of unknown identity were found immediately downstream of cysG. One of these contains 11 direct repeats of 33 nucleotides each, which correspond to the consensus amino acid sequence Asp-Asp-Val-Thr-Pro-Pro-Asp-Asp-Ser-Gly-Asp.


Subject(s)
Escherichia coli/genetics , Gene Expression Regulation, Bacterial , Heme/analogs & derivatives , Methyltransferases/genetics , Oxidoreductases Acting on Sulfur Group Donors/genetics , Plasmids , Salmonella typhimurium/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Codon/genetics , DNA, Bacterial/genetics , Escherichia coli/enzymology , Heme/metabolism , Molecular Sequence Data , Restriction Mapping , Salmonella typhimurium/enzymology , Sulfite Reductase (NADPH)
13.
Invest Ophthalmol Vis Sci ; 31(11): 2326-34, 1990 Nov.
Article in English | MEDLINE | ID: mdl-2173685

ABSTRACT

A light microscopic study was done to investigate retinal changes in healthy and immunosuppressed mice after intraocular inoculation of murine cytomegalovirus (MCMV). A 0.01-ml inoculum containing 10(5) plaque-forming units of MCMV was placed behind the lens in 138 4-week-old Swiss Webster mice. Ninety-eight mice were immunosuppressed with 0.2 mg/g of cyclophosphamide given intraperitoneally at the time of inoculation and 0.1 mg/g of cyclophosphamide every 5 days thereafter. Selected eyes were examined on postinoculation days 5, 10, 15, and 16-20. Evidence of viral infection was most prominent in uveal tissue. Uveal infection developed whether or not animals received cyclophosphamide, but retinal necrosis developed only in immunosuppressed mice. Focal retinal necrosis, primarily involving the outer retinal layers and retinal pigment epithelium, was first observed in an eye examined on day 10. Retinopathy from MCMV was present in three of five eyes (60%) examined on day 15, and in six of 16 eyes (37.5%) examined between days 16-20. Retinal disease was characterized by full-thickness retinal necrosis, scattered cytomegalic cells, intranuclear and intracytoplasmic viral inclusions, and acute and chronic inflammation. These results indicate that MCMV can produce a necrotizing retinopathy in mice and that immunosuppression facilitates infection. Although ocular MCMV infection in immunosuppressed adult mice is a potential model for study of human CMV retinopathy, many differences exist between human CMV and MCMV and between the ocular diseases they produce.


Subject(s)
Cytomegalovirus Infections/pathology , Eye Infections, Viral/pathology , Immune Tolerance , Retinal Diseases/microbiology , Animals , Cyclophosphamide/administration & dosage , Cytomegalovirus/growth & development , Cytomegalovirus Infections/immunology , Eye Infections, Viral/immunology , Female , Mice , Mice, Inbred Strains , Necrosis/pathology , Random Allocation , Retinal Diseases/immunology , Retinal Diseases/pathology , Retinitis/immunology , Retinitis/microbiology , Retinitis/pathology , Uveitis/immunology , Uveitis/microbiology , Uveitis/pathology
14.
Biochem Biophys Res Commun ; 169(1): 39-45, 1990 May 31.
Article in English | MEDLINE | ID: mdl-2161660

ABSTRACT

The reversible reduction and reoxidation of Escherichia coli sulfite reductase hemeprotein subunit at pH 9.9 produces high and low spin ferric species, the latter with properties distinct from any alkaline low spin yet reported. With virtually no effect on the 298 degrees K optical spectrum, chloride drastically reduces the low spin EPR intensity and produces a high spin conformer pattern like that seen at pH 11. The distribution of g = 5 and g = 2.29 species in the doubly-reduced enzyme is also pH-sensitive.


Subject(s)
Escherichia coli/enzymology , Hemeproteins/analysis , Oxidoreductases Acting on Sulfur Group Donors/analysis , Oxidoreductases/analysis , Chlorides , Electron Spin Resonance Spectroscopy , Glycerol , Hydrogen-Ion Concentration , Macromolecular Substances , Oxidation-Reduction , Phosphates
15.
J Biol Chem ; 264(27): 15796-808, 1989 Sep 25.
Article in English | MEDLINE | ID: mdl-2550423

ABSTRACT

NADPH-sulfite reductase flavoprotein (SiR-FP) was purified from a Salmonella typhimurium cysG strain that does not synthesize the hemoprotein component of the sulfite reductase holoenzyme. cysJ, which codes for SiR-FP, was cloned from S. typhimurium LT7 and Escherichia coli B, and both genes were sequenced. Physicochemical analyses and deduced amino acid sequences indicate that SiR-FP is an octamer of identical 66-kDa peptides and contains 4 FAD and 4 FMN per octamer. Potentiometric titrations of SiR holoenzyme, SiR-FP, and FMN-depleted SiR-FP yielded the following redox potentials for the prosthetic groups at pH 7.7: E'1 (FMNH./FMN) = -152 mV; E'2 (FMNH2/FMNH.) = -327 mV; E'3 (FADH./FAD) = -382 mV; E'4 (FADH2/FADH.) = -322 mV. Microcoulometric titration of SiR-FP at 25 degrees C yielded data which were in full agreement with these potentials. Spectroscopic and catalytic studies of native SiR-FP and of SiR-FP depleted of FMN support the following electron flow sequence: NADPH----FAD----FMN. FMN can then contribute electrons to the hemoprotein component of sulfite reductase, as well as to cytochrome c and various diaphorase acceptors. The FMN is postulated to cycle between the FMNH2 and FMNH. oxidation states during catalysis; in this sense SiR-FP shares a catalytic mechanism with NADPH-cytochrome P-450 oxidoreductase. SiR-FP domains involved in binding FMN, FAD, and NADPH are proposed from amino acid sequence homologies with Desulfovibrio vulgaris flavodoxin (Dubourdieu, M., and Fox, J.L. (1977) J. Biol. Chem. 252, 1453-1463) and spinach ferredoxin-NADP+ oxidoreductase (Karplus, P.A., Walsh, K.A., and Herriott, J. R. (1984) Biochemistry 23, 6576-6583). Comparison of the deduced amino acid sequences of SiR-FP and NADPH-cytochrome P-450 oxidoreductase (Porter, T. D., and Kasper, C.B. (1985) Proc. Natl. Acad. Sci. U. S.A. 82, 973-977) also showed identities that suggest these two proteins are descended from a common precursor, which contained binding regions for both FMN and FAD.


Subject(s)
Escherichia coli/enzymology , Flavoproteins/metabolism , Genes, Bacterial , Genes , Oxidoreductases Acting on Sulfur Group Donors/metabolism , Oxidoreductases/metabolism , Salmonella typhimurium/enzymology , Amino Acid Sequence , Base Sequence , Electron Spin Resonance Spectroscopy , Escherichia coli/genetics , Flavoproteins/genetics , Flavoproteins/isolation & purification , Kinetics , Molecular Sequence Data , Oxidoreductases Acting on Sulfur Group Donors/genetics , Oxidoreductases Acting on Sulfur Group Donors/isolation & purification , Peptide Fragments/isolation & purification , Plasmids , Restriction Mapping , Salmonella typhimurium/genetics , Sequence Homology, Nucleic Acid , Spectrophotometry , Sulfite Reductase (NADPH)
16.
J Biol Chem ; 264(26): 15726-37, 1989 Sep 15.
Article in English | MEDLINE | ID: mdl-2670946

ABSTRACT

The hemoprotein component of Salmonella typhimurium sulfite reductase (NADPH) (EC 1.8.1.2) was purified to homogeneity from cysJ266, a mutant strain lacking sulfite reductase flavoprotein. The siroheme- and Fe4S4-containing enzyme was isolated as a monomeric 63-kDa polypeptide and consisted of a mixture of unligated enzyme and a complex with sulfite. Following reduction with 5'-deazaflavin-EDTA and reoxidation, the complex was converted to the uncomplexed, high spin ferri-siroheme state seen previously with Escherichia coli sulfite reductase hemoprotein preparations. The S. typhimurium hemoprotein exhibited catalytic and physical properties identical to the hemoprotein prepared by urea dissociation of E. coli sulfite reductase holoenzyme and was fully competent in reconstituting NADPH-sulfite reductase activity when combined with excess purified sulfite reductase flavoprotein. The DNA sequences of cysI and cysH from S. typhimurium and E. coli B were determined and, together with previously reported data, confirmed the organization of this region as promoter-cysJ-cysI-cysH with all three genes oriented in the same direction from the promoter. Molecular weights deduced for the cysI-encoded sulfite reductase hemoprotein and for the cysH-encoded 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase were approximately 64,000 and 28,000, respectively. Comparison of the deduced amino acid sequence of sulfite reductase hemoprotein with that of spinach nitrite reductase (Back, E., Burkhart, W., Moyer, M., Privalle, L., and Rothstein, S. (1988) Mol. Gen. Genet. 212, 20-26), which also contains siroheme and an Fe4S4 cluster, showed two groups of cysteine-containing sequences with the structures Cys-(X)3-Cys and Cys-(X)5-Cys, which are homologous in the two enzymes and are postulated to provide the ligands of the Fe4S4 cluster in both proteins. From these sequences and from crystallographic (McRee, D. E., Richardson, D. C., Richardson, J. S., and Siegel, L. M. (1986) J. Biol. Chem. 261, 10277-10281) and spectroscopic data in the literature, a model is proposed for the structure of the active center of these two enzymes.


Subject(s)
DNA, Bacterial/genetics , Escherichia coli/genetics , Hemeproteins/genetics , Iron-Sulfur Proteins/genetics , Metalloproteins/genetics , Models, Molecular , Oxidoreductases Acting on Sulfur Group Donors/genetics , Oxidoreductases/genetics , Salmonella typhimurium/genetics , Amino Acid Sequence , Base Sequence , Binding Sites , Escherichia coli/enzymology , Genotype , Hemeproteins/isolation & purification , Iron-Sulfur Proteins/isolation & purification , Molecular Sequence Data , Molecular Weight , Oxidoreductases Acting on Sulfur Group Donors/isolation & purification , Plants/enzymology , Plasmids , Protein Conformation , Restriction Mapping , Salmonella typhimurium/enzymology , Sequence Homology, Nucleic Acid
17.
Biochemistry ; 28(13): 5461-71, 1989 Jun 27.
Article in English | MEDLINE | ID: mdl-2673346

ABSTRACT

Resonance Raman (RR) spectra are reported for the hemoprotein subunit (SiR-HP) of Escherichia coli NADPH-sulfite reductase (EC 1.8.1.2) in various ligation and redox states. Comparison of the RR spectra of extracted siroheme and the mu-oxo FeIII dimer of octaethylisobacteriochlorin with those of mu-oxo FeIII octaethylchlorin dimer and mu-oxo FeIII octaethylporphyrin dimer demonstrates that many siroheme bands can be correlated with established porphyrin skeletal modes. Depolarization measurements are a powerful tool in this correlation, since the 45 degrees rotation of the C2 symmetry axis of the isobacteriochlorin ring relative to the chlorin system results in reversal of the polarization properties (polarized vs anomalously polarized) of bands correlating with B1g and B2g modes of porphyrin. Various SiR-HP adducts (CO, NO, CN-, SO3(2-] show upshifted high-frequency bands, characteristic of the low-spin state and consistent with the expected core size sensitivity of the skeletal modes. Fully reduced unliganded SiR-HP (both siroheme and Fe4S4 cluster reduced) in liquid solution displays RR features comparable to those of high-spin ferrous porphyrins; on freezing, the RR spectrum changes, reflecting an apparent mixture of siroheme spin states. At intermediate reduction levels in solution a RR species is observed whose high-frequency bands are upshifted relative to oxidized and fully reduced SiR-HP. This spectrum, thought to arise from the "one-electron" state of SiR-HP (siroheme reduced, cluster oxidized), may be due to S = 1 FeII siroheme.


Subject(s)
Escherichia coli/enzymology , Hemeproteins/metabolism , Oxidoreductases Acting on Sulfur Group Donors/metabolism , Oxidoreductases/metabolism , Binding Sites , Heme/analysis , Macromolecular Substances , Oxidation-Reduction , Porphyrins/metabolism , Protein Conformation , Spectrum Analysis, Raman/methods , Sulfite Reductase (NADPH)
18.
Biochemistry ; 28(13): 5471-7, 1989 Jun 27.
Article in English | MEDLINE | ID: mdl-2673347

ABSTRACT

Resonance Raman (RR) spectra from the hemoprotein subunit of Escherichia coli sulfite reductase (SiR-HP) are examined in the low-frequency (200-500 cm-1) region where Fe-S stretching modes are expected. In spectra obtained with excitation in the siroheme Soret or Q bands, this region is dominated by siroheme modes. Modes assignable to the Fe4S4 cluster are selectively enhanced, however, with excitation at 488.0 or 457.9 nm. The assignments are confirmed by observation of the expected frequency shifts in SiR-HP extracted from E. coli grown on 34S-labeled sulfate. The mode frequencies and isotopic shifts resemble those seen in RR spectra of other Fe4S4 proteins and analogues, but the breathing mode of the cluster at 342 cm-1 is higher than that observed in the other species. Spectra of various ligand complexes of SiR-HP reveal only slight sensitivity of the cluster terminal ligand modes to the presence of exogenous heme ligands, at variance with a model of ligand binding in a bridged mode between heme and cluster. Close examination of RR spectra obtained with siroheme Soret-band excitation reveals additional 34S-sensitive features at 352 and 393 cm-1. These may be attributed to a bridging thiolate ligand.


Subject(s)
Escherichia coli/enzymology , Hemeproteins/metabolism , Iron-Sulfur Proteins/metabolism , Metalloproteins/metabolism , Oxidoreductases Acting on Sulfur Group Donors/metabolism , Oxidoreductases/metabolism , Iron/analysis , Protein Conformation , Spectrum Analysis, Raman/methods , Sulfite Reductase (NADPH) , Sulfur/analysis , Sulfur Isotopes
19.
Biochemistry ; 28(13): 5477-85, 1989 Jun 27.
Article in English | MEDLINE | ID: mdl-2673348

ABSTRACT

The vibrations of the bound diatomic heme ligands CO, CN-, and NO are investigated by resonance Raman spectroscopy in various redox states of Escherichia coli sulfite reductase hemoprotein, and assignments are generated by use of isotopically labeled ligands. For the fully reduced CO complex (ferrous siroheme, reduced Fe4S4 cluster) at room temperature, nu CO is observed at 1904 cm-1, shifting to 1920 cm-1 upon oxidation of the cluster. The corresponding delta FeCO modes are identified at 574 and 566 cm-1, respectively, by virtue of the zigzag pattern of their isotopic shifts. In frozen solution, two species are observed for the cluster-oxidized state, with nu CO at 1910 and 1936 cm-1 and nu FeC at 532 and 504 cm-1, respectively; nu FeC for the fully reduced species is identified at 526 cm-1 in the frozen state. For the ferrous siroheme-NO complex (cluster oxidized), nu NO is identified at 1555 cm-1 in frozen solution and a low-frequency mode is identified at 558 cm-1; this stretching mode is significantly lower than that observed in Mb-NO. For the ferric siroheme cyanide complexes evidence of two ligand-bonding forms is observed, with modes at 451/390 and 451/352 cm-1; they are distinguished by a reversal of the isotopic shift patterns of the upper and lower modes and could arise from a linear and a bent Fe-C unit, respectively. For the ferrous siroheme cyanide complex isotope-sensitive modes observed at 495 and 452 cm-1 are assigned to the FeCN- bending and FeC stretching vibrations, respectively.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Escherichia coli/enzymology , Hemeproteins/metabolism , Oxidoreductases Acting on Sulfur Group Donors/metabolism , Oxidoreductases/metabolism , Carbon Isotopes , Iron-Sulfur Proteins/metabolism , Ligands , Nitrogen Isotopes , Oxidation-Reduction , Protein Binding , Protein Conformation , Spectrum Analysis, Raman/methods , Sulfite Reductase (NADPH)
20.
Virology ; 166(2): 463-74, 1988 Oct.
Article in English | MEDLINE | ID: mdl-2845658

ABSTRACT

Infection of the central nervous system by Theiler's murine encephalomyelitis virus (TMEV), a picornavirus, produces chronic demyelinating disease in susceptible mice. In this immunoelectron microscopic study of TMEV infection of neonatal mouse brain cells in culture, TMEV antigen was found on the surfaces of infected oligodendrocytes and astrocytes by labeling with hyperimmune serum from TMEV-infected mice or with rabbit antiserum to purified inactivated DA strain TMEV. Brain-derived macrophages had no TMEV-specific antigen on their surfaces and were not able to maintain productive TMEV infection, even though TMEV antigen was present in the cytoplasm. The presence of TMEV antigens on the surfaces of oligodendrocytes (myelin-producing cells) was unexpected because picornaviruses are nonenveloped viruses and do not bud from cell surfaces. The finding is consistent with the hypothesis that demyelination follows damage of infected oligodendrocytes by immune cells or immunoglobulins that recognize surface virus antigen.


Subject(s)
Antigens, Surface/immunology , Antigens, Viral/immunology , Enterovirus Infections/immunology , Enterovirus/immunology , Maus Elberfeld virus/immunology , Neuroglia/immunology , Animals , Astrocytes/immunology , Astrocytes/microbiology , Brain/cytology , Brain/immunology , Brain/microbiology , Cells, Cultured , Immunoenzyme Techniques , Macrophages/immunology , Macrophages/microbiology , Mice , Oligodendroglia/immunology , Oligodendroglia/microbiology
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